TCONS_00054421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054421
Unique NameTCONS_00054421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054421 ID=TCONS_00054421|Name=TCONS_00054421|organism=Clytia hemisphaerica|type=transcript|length=844bp
CGAAGTTGAAGAAGAAGAGAAGTAAAGATGCGTGTGCTTACATGGATAAT
ATCGTTGGCTCTTGTGGCATACATTCAGTCGTATACCATTCCAGAAAATG
ATTTGCTCGATTTACCAAAAGGAAAAGATTTACTTGACCAAGAATACATC
TTTGATGACTTATGGGAAAAAGTGAAATCTGCAGCCAGCAGATTGGTCGA
TTCAGTAAAAGCATCAACACAAAAAATCATCGAACAATATAAACCTCAAA
TCCTTGCTGctttggaaaatgtcaaaaaagttgtcattaaaggAGTCAAA
GACTTGATCCTCGAAGTTGTCAATGGAATTGTCAAAATCATTATCGATGG
TGTATCTTCAACATCAGATGGCAAAGATCATCCAGAATTTGATCTTGTTT
CATTTCCGATCTTTGAAGTAATTGATAGCTCTTCCATTCCAACAATCAAC
TTTGTTACTGATGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGG
AGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAACCAA
AAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGA
AAGAGAATCGTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGTTGA
AGATCTTCAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAGAAG
ATTCTGAATTGATGGATGCTGAATTCTTTTTCTCTGAATTATGGGAAAAG
GTGAAAACTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGcaacaacaca
aaaaatcaTCGAACAATACAAACCTCAAATACTTGCTGCTTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_242:1604516..1611716-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054421 ID=TCONS_00054421|Name=TCONS_00054421|organism=Clytia hemisphaerica|type=transcript|length=7201bp|location=Sequence derived from alignment at scaffold_242:1604516..1611716- (Clytia hemisphaerica)
CGAAGTTGAAGAAGAAGAGAAGTAAAGGTGAGTACAAATCATTTTTTTTT TTCATCTTCTTAAAGATTTTGTCTCTCAAATTTTCTATGACTCGATTTTC GCTAAATTACCTACAAAGAGCACCACAGTGGCGGATCTGAGTTAAAAAAT AATGACGGAGAGCCATCATTTTTCATAAGGAGTATGGCTAATAAAAGAAA CACTCTCCTCCGTCATAAAATTTGAACCTTTCACAGATCAGCAACTGGTA CCTACAAAATTCAAACCATGCATTTAGGTGATGATGTATAAATTGTCTTT TAGATGCGTGTGCTTACATGGATAATATCGTTGGCTCTTGTGGCATACAT TCAGTCGTATACCGTAAGTTGAAATAGAAAACTGTTAATAAGGACTATTT TGCTTTGGTGTGCTATCTTTTTTGTCATCCAATAACTTTACTTTCATATT TGGCTTTATGGCTTTATTTAAATTATCGTGATCGAATCCACGATCTTAAC TGACTGACCTTAACGCAAAGACGTTTTAATATATTTTAATGTCGCTTTGA ATATCTCAGATTATTGGTATGTCATGATTAGTGATTTTGGACATAATTTT GAACACTTCAGCAAAAAATATTTTTCAAATCAAAAAAAATTTCTGATTCT TTTTTGTTTATAGATTCCAGAAAATGATTTGCTCGATTTACCAAAAGGAA AAGATTTACTTGACCAAGAATACATCTTTGATGACTGTAAGTTAAATATT AAAGTAGTTTAGAAATTACCAACATGTTCTTGAAAGGACCAATTTGTTGT GGCAAACAATCTAAGTAAATCCTAAAGACAGAGATTCTGTGGGAACCTTT GTGGAATTTCATTTGATGTACATAAATTAAAGTCAGAACTGATATTTTTT TTCAAATAATTATTACAGTATGGGAAAAAGTGAAATCTGCAGCCAGCAGA TTGGTCGATTCAGTAAAAGCATCAACACAAAAAATCATCGAACAATATAA ACCTCAAATCCTTGCTGCTTTGGAAAATGTCAAAAAAGTTGTCATTAAAG GAGTCAAAGACTTGATCCTCGAAGTTGTCAATGGAATTGTCAAAATCATT ATCGATGGTGTATCTTCAACATCAGATGGCAAAGATCATCCAGAATTTGA TCTTGTTTCATTTCCGATCTTTGAAGTAATTGATAGCTCTTCCATTCCAA CAATCAACTTTGTTACTGATGGTACGTAATTTTGACGGTTCAAACTTGTT TCCTGCTCGCCTCTGAAATAAAAAAATAGATAAGTTGCAAATACTTTTTC AAAATCATGTAATATTAATTCTATCTTCAAATTTCAGCATGGAAGAAAGT CACCGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAG CTTTGATCGAGAAATACAAACCAAAAGTAACAGATGCTTTGACCAGAGTC AAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTGAAATCATTGG TGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTA AAGAACTTGCTGCTCTTTCCGAAGATTCTGAATTGATGGATGCTGAATTC TTCTTCTCTGAATGTAAAGATGATATTTTATTCACAAAAACACAAATCCT ATCCGGGGTCTAAGATTACTCAAATAATTCCGGTTTTTAAAGAGCCAAAA CAACTTTCCCAATTAGAAAACGTTATAGTAGTCTTGAAAACCTTTCAAAG AAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAAACTGCAGC CAACAGATTGTTCGATTCAGTAAAAGCAACAACACAAAAAATCATCGAAC TATACAAACCTCAAATCCTTGCTGCTTTGGAAAATGTCCAAAAAGTTGTC ATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAA AATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAG AGTTTGCTGTTGTCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCC ATTCCAAGAATCAATTTTGTTACCGATGGTAAGTTATTTTGACGATTCGA ACTTGTTTTCCTGTTAGTCTCTGTAATAAAGAAAATAATCAAAATAGATC AATTGCAAATACCTTTTTCAAAATCATAATATTAATTTTATCTTCAAATT TCAGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGGAGACAAGAT TAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAACCAAAAGTAACAG ATGCTTTGACCAGAGTCAAGAAAGTGATAATTGACGAGGGAAAGAGAATC GTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGTTGAAGATCTTCA AGAGGATGAGATTGTTAAAGAGCTTGCTGCTCTTTCCGAAGATTCTGAAT TGATGGATGCTGAATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCA CAAAAACACAAATCCTATCCGGGGTCTAAGATTTCTCAAATAATTCCGGT TTTTAAAGAGCCAAAAAAAACTTTCCCAATGAGAAAACGTTATAGTAGTC TTTAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAA AAGGTGAAAGCTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGCTACAAC ACAAAAAATCATCGAACAATACAAACCTCAAATCCTTGCTGCTTTGGAAA ATGTCCAAAAAGTTGTCATCAAAGGAGTCAAAGATTTGATCATCGAAGTT GTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACATCAGA TGGCAAAGATCACCCAGAGTTTGCTGTTGTTTCATTTTCAATCTTTGAAG TAATTGATGGCTCTTCCATTCCAAGAATCAACTTTGTTACCGATGGTAAG TTATTTTGACGATTCAAACTTGTTTTCCTGTTTGTCTCTGTAATAAAGAA AATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCATATAATA TTAATTCCATGTTCAAATTTCAGCATGGAAGAAAGTCACCGATGCTTTCG AAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGGTCGAGAAA TACAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCAT TGACGAGGGAAAAAGAATCGTTATTGAAATCATTGGTGATATTGTCAAGA TTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAGAGAGCTTGCTGCT CTTCCAGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCTCTGAATG TAAGATAATATTTTATTCACAAAAACACAAATCCTATCCGGGGTCTAAGA TTACTCAAATAATTCCGGTTTTTAAAGAGCCAAAAAAACTTTCTCAATTA GAAAACGTTATAGTAGTCTTGAAAACCTTTCAAATAAATCTCTATCAATT TTCTCTTTAGTATGGGAAAAGGTGAAAACTGCAGCCAACAGCTTGGTCGA TTCAGTAAAAGCAACAACACAAAAAATCATCGAACAATACAAACCTCAAA TACTTGCTGCTTTGGAAAATGTCCAGAAAGTTATCATCAAAGGAGCAAAA GATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGATGG TGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTGTCT CATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAGAATCAAT TTTGTTACCGATGGTAAGTTATTTTGACGATTCAAACTTGTTTTCCTGTT AGTCTCTGTAATAAAGAAAATAATCAAAATAGATAAATTGCAAATACCTT TTTCAAAATCATAATACTAATTTCATCTTCAAATTTCAGCATGGAAGAAA GTCACTGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAG AGCTTTGATCGAGAAATATAAACCAAAAGTAACAGATGCTTTGACCAGAG TCAAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTGAAATCATT GGTGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGT TAGAGAGCTTGCTGCTCTTTCAGAAGATTCTGAATTGATGGATGCTGAAT TCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACACAAATCC TGCTCTCTTGATCTAAAGTTATTAGAATTACTCCGATTTTAAAGAGCCAA AAAAACATTCCCAATGAGAAAAAATTATAGTAGTCTTGAAAACCTTTCAA AGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAATCTGCA GCTAACAGATTGATCGACTCAGTAAAAGCAACAACACAAAAAATCATCGA ACAGTACAAACCTCAAATCCTTGCTGCTTTGGAAAATGTCCAAAAAGTTG TCATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATTGTC AAAATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATCACCC AGAGTTTGCTGTTGTCTCATTTTCAATCTATGAAGAAATTGATAGCTCTT CCATTCCAAGAATCAATTTTGTTACCGATGGTAAGTTATTTTGACGATTC GAACTTGTTTTCCTGTTAGTCTCTGTAATAAAGAAAATAATCAAAATAGA TCAATTGCAAATACCTTTTTCAAAATCATAATATTAATTTCATCTTCAAA TTTCAGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGGAGACAAG ATTAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAACCAAAAGTAAC AGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAGAGAA TCGTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGTTGAAGATCTT CAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAGAAGATTCTGA ATTGATGGATGCTGAATTCTTTTTCTCTGAATGTAAGATAATATTTTATT CACAAAAACACAAATCCTATCCGGGGTCTAATATTTCTCAAATAATTCCG GTTTTTAAAGAGCCAAAAAAACTTTCCCAATGAGAAAACGTTATAGTAGT CTTTAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGA AAAGGTGAAAGCTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGCTACAA CACAAAAAATCATCGAACAATACAAACCTCAAATCCTTGCTGCTTTGGAA AATGTCCAAAAAGTTGTCATCAAAGGAGTCAAAGATTTGATCATCGAAGT TGTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACATCAG ATGGCAAAGACCATCCAGAGTTTGCTATTGTCTCATTTTCAATCTTTGAA GAGATTGATGGCTCTTCCATTCCAAGAATCAACTTTGTTACTGATGGTAA GTTATTTTGACGATTCAAACTTGTTTTCCTGTTTGTCTGTGTAATAAAGA AAATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCATATAAT ATTAATTCCATCTTCAAATTTCAGCATGGAAAAAAGTCACTGATGCTTTC GAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAA ATATAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCA TTGACGAGGGAAAGAGAATCGTTATTGAAATCATTGGTGATATTGTCAAG ATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAGAGAGCTTGCTGC TCTTTCAGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCTCTGAAT GTAAGANGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGA TTGTTAAAGAACTTGCTGCTCTTTCCGAAGATTCTGAATTGATGGATGCT GAATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACACAA ATTCTATCCGGGTTCTGTTCTCTTAAATAATTCCGGTTTTTAAAGAGCCA AAAAAACTTTCCCAATGAGAAAACGTTATAGTAGCCTTGAAAACCTTTCA AAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAAACTGC AGCCAACAGATTGGTCGATTCAGTAAAAGCAACAAAACAAAAAATCATCG AACAATACAAACCTCAAATCCTTGCTGCTTTGAAAAATGTCCAGAAAGTT ATCATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATTGT CAAAATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATCACC CAGAGTTTGCTGTTGTTTCATTTTCAATCTTTGAAGTAATTGATGGCTCT TCCATTCCAAGAATCAACTTTGTTACCGATGGTAAGTTATTTTGACGATT CAAACTTGTTTTCCTGTTTGTCTCTGTAATAAAGAAAATAATCAAAATAG ATCAATTGCAAATACCTTTTTCAAAATCATATAATATTAATTCCATGTTC AAATTTCAGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGGAGAC AAGATTAGCAACCAAACCAGAGCTTTGGTCGAGAAATACAAACCAAAAGT AACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAAA GAATCGTTATTGAAATCATTGGTGATATTGTCAAGATTGTTGTTGAAGAT CTTCAAGAGGATGAGATTGTTAGAGAGCTTGCTGCTCTTCCAGAAGATTC TGAATTGATGGATGCTGAATTCTTCTTCTCTGAATGTAAGATAATATTTT ATTCACAAAAACACAAATCCTATCCGGGGTCTAAGATTACTCAAATAATT CCGGTTTTTAAAGAGCCAAAAAAACTTTCTCAATTAGAAAACGTTATAGT AGTCTTGAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATG GGAAAAGGTGAAAACTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGCAA CAACACAAAAAATCATCGAACAATACAAACCTCAAATACTTGCTGCTTTG G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034299XLOC_034299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054421-exon-scaffold_242-1575043694:1611690..1611716TCONS_00054421-exon-scaffold_242-1575043694:1611690..1611716Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1575043694:1611354..1611413TCONS_00054421-exon-scaffold_242-1575043694:1611354..1611413Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1575043694:1610981..1611053TCONS_00054421-exon-scaffold_242-1575043694:1610981..1611053Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1575043694:1610496..1610798TCONS_00054421-exon-scaffold_242-1575043694:1610496..1610798Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1575043694:1606635..1606910TCONS_00054421-exon-scaffold_242-1575043694:1606635..1606910Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1575043694:1604516..1604620TCONS_00054421-exon-scaffold_242-1575043694:1604516..1604620Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1611690..1611716TCONS_00054421-exon-scaffold_242-1510915933:1611690..1611716Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1611354..1611413TCONS_00054421-exon-scaffold_242-1510915933:1611354..1611413Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1610981..1611053TCONS_00054421-exon-scaffold_242-1510915933:1610981..1611053Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1610496..1610798TCONS_00054421-exon-scaffold_242-1510915933:1610496..1610798Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1606635..1606910TCONS_00054421-exon-scaffold_242-1510915933:1606635..1606910Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1604516..1604620TCONS_00054421-exon-scaffold_242-1510915933:1604516..1604620Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1611690..1611716TCONS_00054421-exon-scaffold_242-1491911889:1611690..1611716Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1611354..1611413TCONS_00054421-exon-scaffold_242-1491911889:1611354..1611413Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1610981..1611053TCONS_00054421-exon-scaffold_242-1491911889:1610981..1611053Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1610496..1610798TCONS_00054421-exon-scaffold_242-1491911889:1610496..1610798Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1606635..1606910TCONS_00054421-exon-scaffold_242-1491911889:1606635..1606910Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1604516..1604620TCONS_00054421-exon-scaffold_242-1491911889:1604516..1604620Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1604516..1611716 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.139783 0.326857 0 0 0 0.0716736 0 0 0 0 0.0668789 0 0 0 0.126202 2.86181 0.927445 0.686142 2.39572 7.9798 5.78512 18.364 65.8598 5.19129 0 0 0 0.321703 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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