TCONS_00054421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054421
Unique NameTCONS_00054421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054421 ID=TCONS_00054421|Name=TCONS_00054421|organism=Clytia hemisphaerica|type=transcript|length=844bp
CGAAGTTGAAGAAGAAGAGAAGTAAAGATGCGTGTGCTTACATGGATAAT
ATCGTTGGCTCTTGTGGCATACATTCAGTCGTATACCATTCCAGAAAATG
ATTTGCTCGATTTACCAAAAGGAAAAGATTTACTTGACCAAGAATACATC
TTTGATGACTTATGGGAAAAAGTGAAATCTGCAGCCAGCAGATTGGTCGA
TTCAGTAAAAGCATCAACACAAAAAATCATCGAACAATATAAACCTCAAA
TCCTTGCTGctttggaaaatgtcaaaaaagttgtcattaaaggAGTCAAA
GACTTGATCCTCGAAGTTGTCAATGGAATTGTCAAAATCATTATCGATGG
TGTATCTTCAACATCAGATGGCAAAGATCATCCAGAATTTGATCTTGTTT
CATTTCCGATCTTTGAAGTAATTGATAGCTCTTCCATTCCAACAATCAAC
TTTGTTACTGATGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGG
AGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAACCAA
AAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGA
AAGAGAATCGTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGTTGA
AGATCTTCAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAGAAG
ATTCTGAATTGATGGATGCTGAATTCTTTTTCTCTGAATTATGGGAAAAG
GTGAAAACTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGcaacaacaca
aaaaatcaTCGAACAATACAAACCTCAAATACTTGCTGCTTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_242:1604516..1611716-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054421 ID=TCONS_00054421|Name=TCONS_00054421|organism=Clytia hemisphaerica|type=transcript|length=7201bp|location=Sequence derived from alignment at scaffold_242:1604516..1611716- (Clytia hemisphaerica)
CGAAGTTGAAGAAGAAGAGAAGTAAAGGTGAGTACAAATCATTTTTTTTT
TTCATCTTCTTAAAGATTTTGTCTCTCAAATTTTCTATGACTCGATTTTC
GCTAAATTACCTACAAAGAGCACCACAGTGGCGGATCTGAGTTAAAAAAT
AATGACGGAGAGCCATCATTTTTCATAAGGAGTATGGCTAATAAAAGAAA
CACTCTCCTCCGTCATAAAATTTGAACCTTTCACAGATCAGCAACTGGTA
CCTACAAAATTCAAACCATGCATTTAGGTGATGATGTATAAATTGTCTTT
TAGATGCGTGTGCTTACATGGATAATATCGTTGGCTCTTGTGGCATACAT
TCAGTCGTATACCGTAAGTTGAAATAGAAAACTGTTAATAAGGACTATTT
TGCTTTGGTGTGCTATCTTTTTTGTCATCCAATAACTTTACTTTCATATT
TGGCTTTATGGCTTTATTTAAATTATCGTGATCGAATCCACGATCTTAAC
TGACTGACCTTAACGCAAAGACGTTTTAATATATTTTAATGTCGCTTTGA
ATATCTCAGATTATTGGTATGTCATGATTAGTGATTTTGGACATAATTTT
GAACACTTCAGCAAAAAATATTTTTCAAATCAAAAAAAATTTCTGATTCT
TTTTTGTTTATAGATTCCAGAAAATGATTTGCTCGATTTACCAAAAGGAA
AAGATTTACTTGACCAAGAATACATCTTTGATGACTGTAAGTTAAATATT
AAAGTAGTTTAGAAATTACCAACATGTTCTTGAAAGGACCAATTTGTTGT
GGCAAACAATCTAAGTAAATCCTAAAGACAGAGATTCTGTGGGAACCTTT
GTGGAATTTCATTTGATGTACATAAATTAAAGTCAGAACTGATATTTTTT
TTCAAATAATTATTACAGTATGGGAAAAAGTGAAATCTGCAGCCAGCAGA
TTGGTCGATTCAGTAAAAGCATCAACACAAAAAATCATCGAACAATATAA
ACCTCAAATCCTTGCTGCTTTGGAAAATGTCAAAAAAGTTGTCATTAAAG
GAGTCAAAGACTTGATCCTCGAAGTTGTCAATGGAATTGTCAAAATCATT
ATCGATGGTGTATCTTCAACATCAGATGGCAAAGATCATCCAGAATTTGA
TCTTGTTTCATTTCCGATCTTTGAAGTAATTGATAGCTCTTCCATTCCAA
CAATCAACTTTGTTACTGATGGTACGTAATTTTGACGGTTCAAACTTGTT
TCCTGCTCGCCTCTGAAATAAAAAAATAGATAAGTTGCAAATACTTTTTC
AAAATCATGTAATATTAATTCTATCTTCAAATTTCAGCATGGAAGAAAGT
CACCGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAG
CTTTGATCGAGAAATACAAACCAAAAGTAACAGATGCTTTGACCAGAGTC
AAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTGAAATCATTGG
TGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTA
AAGAACTTGCTGCTCTTTCCGAAGATTCTGAATTGATGGATGCTGAATTC
TTCTTCTCTGAATGTAAAGATGATATTTTATTCACAAAAACACAAATCCT
ATCCGGGGTCTAAGATTACTCAAATAATTCCGGTTTTTAAAGAGCCAAAA
CAACTTTCCCAATTAGAAAACGTTATAGTAGTCTTGAAAACCTTTCAAAG
AAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAAACTGCAGC
CAACAGATTGTTCGATTCAGTAAAAGCAACAACACAAAAAATCATCGAAC
TATACAAACCTCAAATCCTTGCTGCTTTGGAAAATGTCCAAAAAGTTGTC
ATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAA
AATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAG
AGTTTGCTGTTGTCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCC
ATTCCAAGAATCAATTTTGTTACCGATGGTAAGTTATTTTGACGATTCGA
ACTTGTTTTCCTGTTAGTCTCTGTAATAAAGAAAATAATCAAAATAGATC
AATTGCAAATACCTTTTTCAAAATCATAATATTAATTTTATCTTCAAATT
TCAGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGGAGACAAGAT
TAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAACCAAAAGTAACAG
ATGCTTTGACCAGAGTCAAGAAAGTGATAATTGACGAGGGAAAGAGAATC
GTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGTTGAAGATCTTCA
AGAGGATGAGATTGTTAAAGAGCTTGCTGCTCTTTCCGAAGATTCTGAAT
TGATGGATGCTGAATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCA
CAAAAACACAAATCCTATCCGGGGTCTAAGATTTCTCAAATAATTCCGGT
TTTTAAAGAGCCAAAAAAAACTTTCCCAATGAGAAAACGTTATAGTAGTC
TTTAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAA
AAGGTGAAAGCTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGCTACAAC
ACAAAAAATCATCGAACAATACAAACCTCAAATCCTTGCTGCTTTGGAAA
ATGTCCAAAAAGTTGTCATCAAAGGAGTCAAAGATTTGATCATCGAAGTT
GTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACATCAGA
TGGCAAAGATCACCCAGAGTTTGCTGTTGTTTCATTTTCAATCTTTGAAG
TAATTGATGGCTCTTCCATTCCAAGAATCAACTTTGTTACCGATGGTAAG
TTATTTTGACGATTCAAACTTGTTTTCCTGTTTGTCTCTGTAATAAAGAA
AATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCATATAATA
TTAATTCCATGTTCAAATTTCAGCATGGAAGAAAGTCACCGATGCTTTCG
AAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGGTCGAGAAA
TACAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCAT
TGACGAGGGAAAAAGAATCGTTATTGAAATCATTGGTGATATTGTCAAGA
TTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAGAGAGCTTGCTGCT
CTTCCAGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCTCTGAATG
TAAGATAATATTTTATTCACAAAAACACAAATCCTATCCGGGGTCTAAGA
TTACTCAAATAATTCCGGTTTTTAAAGAGCCAAAAAAACTTTCTCAATTA
GAAAACGTTATAGTAGTCTTGAAAACCTTTCAAATAAATCTCTATCAATT
TTCTCTTTAGTATGGGAAAAGGTGAAAACTGCAGCCAACAGCTTGGTCGA
TTCAGTAAAAGCAACAACACAAAAAATCATCGAACAATACAAACCTCAAA
TACTTGCTGCTTTGGAAAATGTCCAGAAAGTTATCATCAAAGGAGCAAAA
GATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGATGG
TGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTGTCT
CATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAGAATCAAT
TTTGTTACCGATGGTAAGTTATTTTGACGATTCAAACTTGTTTTCCTGTT
AGTCTCTGTAATAAAGAAAATAATCAAAATAGATAAATTGCAAATACCTT
TTTCAAAATCATAATACTAATTTCATCTTCAAATTTCAGCATGGAAGAAA
GTCACTGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAG
AGCTTTGATCGAGAAATATAAACCAAAAGTAACAGATGCTTTGACCAGAG
TCAAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTGAAATCATT
GGTGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGT
TAGAGAGCTTGCTGCTCTTTCAGAAGATTCTGAATTGATGGATGCTGAAT
TCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACACAAATCC
TGCTCTCTTGATCTAAAGTTATTAGAATTACTCCGATTTTAAAGAGCCAA
AAAAACATTCCCAATGAGAAAAAATTATAGTAGTCTTGAAAACCTTTCAA
AGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAATCTGCA
GCTAACAGATTGATCGACTCAGTAAAAGCAACAACACAAAAAATCATCGA
ACAGTACAAACCTCAAATCCTTGCTGCTTTGGAAAATGTCCAAAAAGTTG
TCATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATTGTC
AAAATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATCACCC
AGAGTTTGCTGTTGTCTCATTTTCAATCTATGAAGAAATTGATAGCTCTT
CCATTCCAAGAATCAATTTTGTTACCGATGGTAAGTTATTTTGACGATTC
GAACTTGTTTTCCTGTTAGTCTCTGTAATAAAGAAAATAATCAAAATAGA
TCAATTGCAAATACCTTTTTCAAAATCATAATATTAATTTCATCTTCAAA
TTTCAGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGGAGACAAG
ATTAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAACCAAAAGTAAC
AGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAGAGAA
TCGTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGTTGAAGATCTT
CAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAGAAGATTCTGA
ATTGATGGATGCTGAATTCTTTTTCTCTGAATGTAAGATAATATTTTATT
CACAAAAACACAAATCCTATCCGGGGTCTAATATTTCTCAAATAATTCCG
GTTTTTAAAGAGCCAAAAAAACTTTCCCAATGAGAAAACGTTATAGTAGT
CTTTAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGA
AAAGGTGAAAGCTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGCTACAA
CACAAAAAATCATCGAACAATACAAACCTCAAATCCTTGCTGCTTTGGAA
AATGTCCAAAAAGTTGTCATCAAAGGAGTCAAAGATTTGATCATCGAAGT
TGTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACATCAG
ATGGCAAAGACCATCCAGAGTTTGCTATTGTCTCATTTTCAATCTTTGAA
GAGATTGATGGCTCTTCCATTCCAAGAATCAACTTTGTTACTGATGGTAA
GTTATTTTGACGATTCAAACTTGTTTTCCTGTTTGTCTGTGTAATAAAGA
AAATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCATATAAT
ATTAATTCCATCTTCAAATTTCAGCATGGAAAAAAGTCACTGATGCTTTC
GAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAA
ATATAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCA
TTGACGAGGGAAAGAGAATCGTTATTGAAATCATTGGTGATATTGTCAAG
ATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAGAGAGCTTGCTGC
TCTTTCAGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCTCTGAAT
GTAAGANGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGA
TTGTTAAAGAACTTGCTGCTCTTTCCGAAGATTCTGAATTGATGGATGCT
GAATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACACAA
ATTCTATCCGGGTTCTGTTCTCTTAAATAATTCCGGTTTTTAAAGAGCCA
AAAAAACTTTCCCAATGAGAAAACGTTATAGTAGCCTTGAAAACCTTTCA
AAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAAACTGC
AGCCAACAGATTGGTCGATTCAGTAAAAGCAACAAAACAAAAAATCATCG
AACAATACAAACCTCAAATCCTTGCTGCTTTGAAAAATGTCCAGAAAGTT
ATCATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATTGT
CAAAATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATCACC
CAGAGTTTGCTGTTGTTTCATTTTCAATCTTTGAAGTAATTGATGGCTCT
TCCATTCCAAGAATCAACTTTGTTACCGATGGTAAGTTATTTTGACGATT
CAAACTTGTTTTCCTGTTTGTCTCTGTAATAAAGAAAATAATCAAAATAG
ATCAATTGCAAATACCTTTTTCAAAATCATATAATATTAATTCCATGTTC
AAATTTCAGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGGAGAC
AAGATTAGCAACCAAACCAGAGCTTTGGTCGAGAAATACAAACCAAAAGT
AACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAAA
GAATCGTTATTGAAATCATTGGTGATATTGTCAAGATTGTTGTTGAAGAT
CTTCAAGAGGATGAGATTGTTAGAGAGCTTGCTGCTCTTCCAGAAGATTC
TGAATTGATGGATGCTGAATTCTTCTTCTCTGAATGTAAGATAATATTTT
ATTCACAAAAACACAAATCCTATCCGGGGTCTAAGATTACTCAAATAATT
CCGGTTTTTAAAGAGCCAAAAAAACTTTCTCAATTAGAAAACGTTATAGT
AGTCTTGAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATG
GGAAAAGGTGAAAACTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGCAA
CAACACAAAAAATCATCGAACAATACAAACCTCAAATACTTGCTGCTTTG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034299XLOC_034299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054421-exon-scaffold_242-1575043694:1611690..1611716TCONS_00054421-exon-scaffold_242-1575043694:1611690..1611716Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1575043694:1611354..1611413TCONS_00054421-exon-scaffold_242-1575043694:1611354..1611413Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1575043694:1610981..1611053TCONS_00054421-exon-scaffold_242-1575043694:1610981..1611053Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1575043694:1610496..1610798TCONS_00054421-exon-scaffold_242-1575043694:1610496..1610798Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1575043694:1606635..1606910TCONS_00054421-exon-scaffold_242-1575043694:1606635..1606910Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1575043694:1604516..1604620TCONS_00054421-exon-scaffold_242-1575043694:1604516..1604620Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1611690..1611716TCONS_00054421-exon-scaffold_242-1510915933:1611690..1611716Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1611354..1611413TCONS_00054421-exon-scaffold_242-1510915933:1611354..1611413Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1610981..1611053TCONS_00054421-exon-scaffold_242-1510915933:1610981..1611053Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1610496..1610798TCONS_00054421-exon-scaffold_242-1510915933:1610496..1610798Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1606635..1606910TCONS_00054421-exon-scaffold_242-1510915933:1606635..1606910Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1510915933:1604516..1604620TCONS_00054421-exon-scaffold_242-1510915933:1604516..1604620Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1611690..1611716TCONS_00054421-exon-scaffold_242-1491911889:1611690..1611716Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1611354..1611413TCONS_00054421-exon-scaffold_242-1491911889:1611354..1611413Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1610981..1611053TCONS_00054421-exon-scaffold_242-1491911889:1610981..1611053Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1610496..1610798TCONS_00054421-exon-scaffold_242-1491911889:1610496..1610798Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1606635..1606910TCONS_00054421-exon-scaffold_242-1491911889:1606635..1606910Clytia hemisphaericaexon
TCONS_00054421-exon-scaffold_242-1491911889:1604516..1604620TCONS_00054421-exon-scaffold_242-1491911889:1604516..1604620Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1604516..1611716 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.139783	0.326857	0	0	0	0.0716736	0	0	0	0	0.0668789	0	0	0	0.126202	2.86181	0.927445	0.686142	2.39572	7.9798	5.78512	18.364	65.8598	5.19129	0	0	0	0.321703	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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