TCONS_00054478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054478
Unique NameTCONS_00054478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054478 ID=TCONS_00054478|Name=TCONS_00054478|organism=Clytia hemisphaerica|type=transcript|length=1848bp
gaaaaagaaaacaaagaatgttaaaataaaacaaaagatttgtttgaaaa
attaaacaatagacgACATGAAAAAGAACCAATCATATAGcagtattttc
attttgttttgttttgattcttagCTCCTTTTCAAGTTGTCTGGTTTGTT
GGTTCAATCTTTTTATTGCTATCTTGGTCCCTTCTGTTGAGCCCACGGGA
ATATACTGCTGGTTAGACAGGTGCAATAAAGAAAAGAGGGGTTTGGACCA
AATCATCATCTAGAGAGTGCCATTATTAAAATATGATAGAACAATAAAGt
atcgattgattgattgattgtgaTTATTTGATTGAGGGGATGAAAATTAA
TATAAACTTGGACCTCTAGGAACGTTGAAGCATTAGCATACTCGTCAACG
ATAGATCAACAAGTAACTTTACAAAGGTCGAGGATTTCTCACAATGCCga
aatcttttttaatcaaGAAATGGGGacgcaaattcaatttttattcacgC
TCGTCAGAGTTCAACATTCAGAAGGATTGCACCGAAGAAACAAACTTTCT
TACTATCCCGTCACCGCCACCGGCACGACcagttttaaaagaaaagaact
taTCTTCACCTACTCAGCCGTCTAATGTCAAGGAAAAACCAATCGATTTG
AAAGCCTTGTTCTTGACGAGTATTCCAGTATCAAAACCATTTGGATTATA
CTATCTCGAACAAAATAGTAGATCAAACAACGGGCAGCAACCGGTTACTA
AGAGACATGTTCCGCCAGAAGATAATCCTACTACGATAATACCGTCACCA
AATAAAGACCACATATTTCGTGTCTCACCAAAGGTCGATGGCCCGCTTAA
CCAATCCTCGTTCAACTGTCAACTCTGTAAATTATCCTTCTGTGATCCTT
TATCACTAGCACAACATAAATGCTCGAAAATCAAGCACGTCGAACATCGA
TGTCCAGAATGCGATAAAGTATTCAACTGTCCCGCCAATCTCGCCTCACA
TCGTCGCTGGCATCGCCCTCGTTCACCGACCACTAACCGACCGAGAAAAG
TCGGTAAAGCGGAAAAGAAATTGGTAGAGAAAAAGTCACAGATTAGTTTA
AGAACACCAGAGTACCAGATCAAAAATCCGAAAATCGAAGCAATGCGGAA
CATCCGAGAAGACCCGAAACTTCAAGAAGTTCCAGTCCGAGGAAGCCCAA
TCGTAAAACCAACAGTTTACCGTTACAAGCAAACCACGCAAAACCTACCA
AACAGGTTTTACGATCAAATGAATATCTATCGACAACGAAAACTAAGCAA
CCATTTCCCCACCATGATCTCAAATAATCGGATGATGGTGCGTAAACATT
ATCATAGGATCGGTAGTGAGTCTTCAGATGTCGAAAGCGAAGAAGACTTC
CTGGAACACAAACAAAATCATGAACTCTCAACAGAAGAGATagaaattga
cgtcatttcaaACAATTCTAACAGTAGTAGTATGACGTCACCGTCATCCA
GTTTGACGTCACCAAAACTACCTTATCAACAAGGACTATTTAAAAGGGGT
AGCTGGAATGGCCCAAGTCATACCACACCACCACCATATACCTTTTCATA
tatgtaaattttatttttaagattctggaaattttttgatttgaaatttt
ctatgtAAAGTTGAAATTTGAAGGGTCGAACAAAATGCTTTAGTGCCCTT
CAGTTTTTAACAAAAACTTATCTAATTACCACGAAGTCTATTTTTTATAG
TAATTTATTGCTGCAAATAGtgtaattattattttattttgccATTTACT
GTAATTATGCAAACACATGTACATAATTaactgaaaatctgaaaagag
Run BLAST on NCBI

protein sequence of TCONS_00054478-protein

>TCONS_00054478-protein ID=TCONS_00054478-protein|Name=TCONS_00054478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MPKSFLIKKWGRKFNFYSRSSEFNIQKDCTEETNFLTIPSPPPARPVLKE
KNLSSPTQPSNVKEKPIDLKALFLTSIPVSKPFGLYYLEQNSRSNNGQQP
VTKRHVPPEDNPTTIIPSPNKDHIFRVSPKVDGPLNQSSFNCQLCKLSFC
DPLSLAQHKCSKIKHVEHRCPECDKVFNCPANLASHRRWHRPRSPTTNRP
RKVGKAEKKLVEKKSQISLRTPEYQIKNPKIEAMRNIREDPKLQEVPVRG
SPIVKPTVYRYKQTTQNLPNRFYDQMNIYRQRKLSNHFPTMISNNRMMVR
KHYHRIGSESSDVESEEDFLEHKQNHELSTEEIEIDVISNNSNSSSMTSP
SSSLTSPKLPYQQGLFKRGSWNGPSHTTPPPYTFSYM
Run BLAST on NCBI

transcript from alignment at scaffold_242:1116527..1118374

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054478 ID=TCONS_00054478|Name=TCONS_00054478|organism=Clytia hemisphaerica|type=transcript|length=1848bp|location=Sequence derived from alignment at scaffold_242:1116527..1118374 (Clytia hemisphaerica)
ctcttttcagattttcagttAATTATGTACATGTGTTTGCATAATTACAG
TAAATggcaaaataaaataataattacaCTATTTGCAGCAATAAATTACT
ATAAAAAATAGACTTCGTGGTAATTAGATAAGTTTTTGTTAAAAACTGAA
GGGCACTAAAGCATTTTGTTCGACCCTTCAAATTTCAACTTTacatagaa
aatttcaaatcaaaaaatttccagaatcttaaaaataaaatttacataTA
TGAAAAGGTATATGGTGGTGGTGTGGTATGACTTGGGCCATTCCAGCTAC
CCCTTTTAAATAGTCCTTGTTGATAAGGTAGTTTTGGTGACGTCAAACTG
GATGACGGTGACGTCATACTACTACTGTTAGAATTGTttgaaatgacgtc
aatttctATCTCTTCTGTTGAGAGTTCATGATTTTGTTTGTGTTCCAGGA
AGTCTTCTTCGCTTTCGACATCTGAAGACTCACTACCGATCCTATGATAA
TGTTTACGCACCATCATCCGATTATTTGAGATCATGGTGGGGAAATGGTT
GCTTAGTTTTCGTTGTCGATAGATATTCATTTGATCGTAAAACCTGTTTG
GTAGGTTTTGCGTGGTTTGCTTGTAACGGTAAACTGTTGGTTTTACGATT
GGGCTTCCTCGGACTGGAACTTCTTGAAGTTTCGGGTCTTCTCGGATGTT
CCGCATTGCTTCGATTTTCGGATTTTTGATCTGGTACTCTGGTGTTCTTA
AACTAATCTGTGACTTTTTCTCTACCAATTTCTTTTCCGCTTTACCGACT
TTTCTCGGTCGGTTAGTGGTCGGTGAACGAGGGCGATGCCAGCGACGATG
TGAGGCGAGATTGGCGGGACAGTTGAATACTTTATCGCATTCTGGACATC
GATGTTCGACGTGCTTGATTTTCGAGCATTTATGTTGTGCTAGTGATAAA
GGATCACAGAAGGATAATTTACAGAGTTGACAGTTGAACGAGGATTGGTT
AAGCGGGCCATCGACCTTTGGTGAGACACGAAATATGTGGTCTTTATTTG
GTGACGGTATTATCGTAGTAGGATTATCTTCTGGCGGAACATGTCTCTTA
GTAACCGGTTGCTGCCCGTTGTTTGATCTACTATTTTGTTCGAGATAGTA
TAATCCAAATGGTTTTGATACTGGAATACTCGTCAAGAACAAGGCTTTCA
AATCGATTGGTTTTTCCTTGACATTAGACGGCTGAGTAGGTGAAGAtaag
ttcttttcttttaaaactgGTCGTGCCGGTGGCGGTGACGGGATAGTAAG
AAAGTTTGTTTCTTCGGTGCAATCCTTCTGAATGTTGAACTCTGACGAGc
gtgaataaaaattgaatttgcgtCCCCATTTCttgattaaaaaagatttc
GGCATTGTGAGAAATCCTCGACCTTTGTAAAGTTACTTGTTGATCTATCG
TTGACGAGTATGCTAATGCTTCAACGTTCCTAGAGGTCCAAGTTTATATT
AATTTTCATCCCCTCAATCAAATAAtcacaatcaatcaatcaatcgataC
TTTATTGTTCTATCATATTTTAATAATGGCACTCTCTAGATGATGATTTG
GTCCAAACCCCTCTTTTCTTTATTGCACCTGTCTAACCAGCAGTATATTC
CCGTGGGCTCAACAGAAGGGACCAAGATAGCAATAAAAAGATTGAACCAA
CAAACCAGACAACTTGAAAAGGAGctaagaatcaaaacaaaacaaaatga
aaatactgCTATATGATTGGTTCTTTTTCATGTcgtctattgtttaattt
ttcaaacaaatcttttgttttattttaacattctttgttttctttttc

Coding sequence (CDS) from alignment at scaffold_242:1116527..1118374

>TCONS_00054478 ID=TCONS_00054478|Name=TCONS_00054478|organism=Clytia hemisphaerica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_242:1116527..1118374 (Clytia hemisphaerica)
ttacataTATGAAAAGGTATATGGTGGTGGTGTGGTATGACTTGGGCCAT
TCCAGCTACCCCTTTTAAATAGTCCTTGTTGATAAGGTAGTTTTGGTGAC
GTCAAACTGGATGACGGTGACGTCATACTACTACTGTTAGAATTGTttga
aatgacgtcaatttctATCTCTTCTGTTGAGAGTTCATGATTTTGTTTGT
GTTCCAGGAAGTCTTCTTCGCTTTCGACATCTGAAGACTCACTACCGATC
CTATGATAATGTTTACGCACCATCATCCGATTATTTGAGATCATGGTGGG
GAAATGGTTGCTTAGTTTTCGTTGTCGATAGATATTCATTTGATCGTAAA
ACCTGTTTGGTAGGTTTTGCGTGGTTTGCTTGTAACGGTAAACTGTTGGT
TTTACGATTGGGCTTCCTCGGACTGGAACTTCTTGAAGTTTCGGGTCTTC
TCGGATGTTCCGCATTGCTTCGATTTTCGGATTTTTGATCTGGTACTCTG
GTGTTCTTAAACTAATCTGTGACTTTTTCTCTACCAATTTCTTTTCCGCT
TTACCGACTTTTCTCGGTCGGTTAGTGGTCGGTGAACGAGGGCGATGCCA
GCGACGATGTGAGGCGAGATTGGCGGGACAGTTGAATACTTTATCGCATT
CTGGACATCGATGTTCGACGTGCTTGATTTTCGAGCATTTATGTTGTGCT
AGTGATAAAGGATCACAGAAGGATAATTTACAGAGTTGACAGTTGAACGA
GGATTGGTTAAGCGGGCCATCGACCTTTGGTGAGACACGAAATATGTGGT
CTTTATTTGGTGACGGTATTATCGTAGTAGGATTATCTTCTGGCGGAACA
TGTCTCTTAGTAACCGGTTGCTGCCCGTTGTTTGATCTACTATTTTGTTC
GAGATAGTATAATCCAAATGGTTTTGATACTGGAATACTCGTCAAGAACA
AGGCTTTCAAATCGATTGGTTTTTCCTTGACATTAGACGGCTGAGTAGGT
GAAGAtaagttcttttcttttaaaactgGTCGTGCCGGTGGCGGTGACGG
GATAGTAAGAAAGTTTGTTTCTTCGGTGCAATCCTTCTGAATGTTGAACT
CTGACGAGcgtgaataaaaattgaatttgcgtCCCCATTTCttgattaaa
aaagatttcGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034341XLOC_034341Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054478-proteinTCONS_00054478-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054478-exon-scaffold_242-1491911889:1116527..1118374TCONS_00054478-exon-scaffold_242-1491911889:1116527..1118374Clytia hemisphaericaexon
TCONS_00054478-exon-scaffold_242-1510915933:1116527..1118374TCONS_00054478-exon-scaffold_242-1510915933:1116527..1118374Clytia hemisphaericaexon
TCONS_00054478-exon-scaffold_242-1575043694:1116527..1118374TCONS_00054478-exon-scaffold_242-1575043694:1116527..1118374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1116527..1118374 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.671388	0.899611	33.1447	31.8373	3.46572	5.08365	1.38161	1.51369	1.98666	1.33059	0	0.0131904	1.54371	1.79877	6.21274	5.46581	1.36036	1.68436	0.372283	0.361023	0.69721	1.07855	0.0890428	0.0633526	0	0.024478
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00054478 vs. Swiss-Prot (Human)
Match: INSM2 (Insulinoma-associated protein 2 OS=Homo sapiens GN=INSM2 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.109e-22
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 3 
Query:  843 PLNQSSFNCQLCKLSFCDPLSLAQHKCSKIKHVEHRCPECDKVFNCPANLASHRRWHRPRSPTTN 1037
            PL +  F CQLCK  + DP +LAQH+CS+I  VE+RCPECDKVF+CPANLASHRRWH+PR    N
Sbjct:  259 PLGE--FICQLCKEQYADPFALAQHRCSRIVRVEYRCPECDKVFSCPANLASHRRWHKPRPAAAN 321
The following BLAST results are available for this feature:
BLAST of TCONS_00054478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INSM21.109e-2266.15Insulinoma-associated protein 2 OS=Homo sapiens GN... [more]
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