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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054568 ID=TCONS_00054568|Name=TCONS_00054568|organism=Clytia hemisphaerica|type=transcript|length=2087bpRun BLAST on NCBI protein sequence of TCONS_00054568-protein >TCONS_00054568-protein ID=TCONS_00054568-protein|Name=TCONS_00054568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp MAEPQSKKPRVGLEEGLLVGMGNPLLDISANCDESFLTKYDLKANDAILARun BLAST on NCBI transcript from alignment at scaffold_243:708478..718753+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054568 ID=TCONS_00054568|Name=TCONS_00054568|organism=Clytia hemisphaerica|type=transcript|length=10276bp|location=Sequence derived from alignment at scaffold_243:708478..718753+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_243:708478..718753+ >TCONS_00054568 ID=TCONS_00054568|Name=TCONS_00054568|organism=Clytia hemisphaerica|type=CDS|length=12852bp|location=Sequence derived from alignment at scaffold_243:708478..718753+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054568 vs. Swiss-Prot (Human)
Match: ADK (Adenosine kinase OS=Homo sapiens GN=ADK PE=1 SV=2) HSP 1 Score: 360.147 bits (923), Expect = 2.145e-117 Identity = 179/334 (53.59%), Postives = 236/334 (70.66%), Query Frame = 3
Query: 582 MGNPLLDISANCDESFLTKYDLKANDAILASEPHLPMYKEMVDKFDVEYIAGGATLNTMRVCQWLVQKPN-VISYFGCIGDDDYGKKLVEKATEAGVNMKPQVNTENDTGTCGVLITNKGANRSLVANLAAANHFKR-THFDQEVVKKIIDGADYFYIGGFFLTVSPESILEMAKHASDNNKYCMTNLSAPFLCQFFAEPMMKFFPYVDVLFGNETEAVAFAKQQNFGTEDIKEIALKAATLDKINKGRERIVIFTQGKDPTIVATGGKVTEYPIIPIEAKDIIDTNGAGDSFVGGFLSQFMQGKDIPRCVQVGNYAANYIIQQSGVTLSGTPN 1577
MGNPLLDISA D+ FL KY LK ND ILA + H ++ E+V KF VEY AGG+T N+++V QW++Q+P+ ++FGCIG D +G+ L KA EA V+ E TGTC IT G NRSL+ANLAAAN +K+ H D E +++ A YI GFFLTVSPES+L++A HAS+NN+ NLSAPF+ QF+ E +MK PYVD+LFGNETEA FA++Q F T+DIKEIA K L K+N R+RIVIFTQG+D TI+AT +VT + ++ + K+IIDTNGAGD+FVGGFLSQ + K + C++ G+YAA+ II+++G T P+
Sbjct: 29 MGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACIT--GDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGGFLSQLVSDKPLTECIRAGHYAASIIIRRTGCTFPEKPD 360 The following BLAST results are available for this feature:
BLAST of TCONS_00054568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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