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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054845 ID=TCONS_00054845|Name=TCONS_00054845|organism=Clytia hemisphaerica|type=transcript|length=3891bpRun BLAST on NCBI protein sequence of TCONS_00054845-protein >TCONS_00054845-protein ID=TCONS_00054845-protein|Name=TCONS_00054845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1275bp MACLCNLIKDMKKIMRRILVVLMITPAIFQNFVLGDFQFVSKSWLAVPAIRun BLAST on NCBI transcript from alignment at scaffold_245:770952..785455- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054845 ID=TCONS_00054845|Name=TCONS_00054845|organism=Clytia hemisphaerica|type=transcript|length=14504bp|location=Sequence derived from alignment at scaffold_245:770952..785455- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:770952..785455- >TCONS_00054845 ID=TCONS_00054845|Name=TCONS_00054845|organism=Clytia hemisphaerica|type=CDS|length=72732bp|location=Sequence derived from alignment at scaffold_245:770952..785455- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054845 vs. Swiss-Prot (Human)
Match: FGFR3 (Fibroblast growth factor receptor 3 OS=Homo sapiens GN=FGFR3 PE=1 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 1.016e-82 Identity = 182/553 (32.91%), Postives = 270/553 (48.82%), Query Frame = 1
Query: 2047 CKAHGNPHPKVTWYRINQSNNR----NSTELTTHNRLATLNST-----ILQRYG-----SGVYKCLAKNSEGETSKGMNLTLITADKNTQSADNLKEIFIGI---ALAFVLMIIFMICFILWYKRRLKKKH--AAYLRPNANFVLDPDRSLFDQSN---------------------------ELPYDMTWEFPQQKLTFIKSLGKGAFGEVWLAEAEGITEIDARDKSNEATKRRKRFRNEGGCLARLIGKNKKTNEGYQKTLVAVKTLKDESDASQYKDLASELKILIHVGQHKNIVNLLGACTLEGKLRVILEFCFHGNLLTFLRSKRDSYQDVWEKHKEDMSDEFTNVDMLKIALDIAKGMEFLESRKCVHRDLAARNVLVSVDFTMKIGDFGLARDXDLAARNVLVSVDFTMKIGDFGLARDLINDEFYLKQTSGLVPIKWMPPEAIKDKIYNSLTDVWSYGIVLWEIYSLGGSPYPGLPAENLMKFLDSERRMECPDHCPISVYKVMLKCWSKVPFNRPSFKEIKEELSSIMKENSPNYASQYIDLT 3567
CK + + P + W + + N + T T + A N+T +L + +G Y CLA NS G + L ++ A++ AD ++ GI + F L I+ + L R KK + + + F L SL ++ ELP D WE + +LT K LG+G FG+V +AEA GI DK A + VAVK LKD++ DL SE++++ +G+HKNI+NLLGACT G L V++E+ GNL FLR++R D + ++ T D++ A +A+GME+L S+KC+HRDLAAR NVLV+ D MKI DFGLARD+ N ++Y K T+G +P+KWM PEA+ D++Y +DVWS+G++LWEI++LGGSPYPG+P E L K L RM+ P +C +Y +M +CW P RP+FK++ E+L ++ S + +Y+DL+
Sbjct: 275 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVEADEAGSVYAGILSYGVGFFLFILVVAAVTLCRLRSPPKKGLGSPTVHKISRFPLKRQVSLESNASMSSNTPLVRIARLSSGEGPTLANVSELELPADPKWELSRARLTLGKPLGEGCFGQVVMAEAIGI------DKDRAA----------------------------KPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGLDYSFDTCKPPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAAR--------------------------NVLVTEDNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTD---EYLDLS 764 The following BLAST results are available for this feature:
BLAST of TCONS_00054845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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