TCONS_00054896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054896
Unique NameTCONS_00054896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054896 ID=TCONS_00054896|Name=TCONS_00054896|organism=Clytia hemisphaerica|type=transcript|length=745bp
TCAAACGACGCCTGGCAATGTGTGCAAGAAAATTGGGGCGAACCAAAGAA
GCAGTCAAATTAATGAAAGAtTTGCTGAAAGAGTACCCTTTATTAAGTGT
TCTCAACATCCACGAGAATTTGATCGAAGCACTACTAGAACTACAAGCAT
ATTCTGAAGTGCAGcaagTACTGACGAAATATGATGatATCAGTCTTCCA
AAATCTGCAACAATATGTTACACAGCCGCCCTCTTGAAAGCAAGAAATGT
AGCTGACAAATTTTCACCAGAGCTAGCAGCAAAGAGAGGTTTGAGTCCAG
CAGAGATGAGCGCAGTAGAAGCAATACACAGAGCTGTTGAATTCAACCCA
CACGTACCTAAGTATTTATTAGAAGAGAAGAGCGTCATTCTTCCAGCAGA
ACACATCCTGAAACGTGGCGATAGTGAAGCCATTGCATATTCTTTCTTTC
ACCTTCAACACTGGAAACGTCTAGATGGTGCTCTCAATCTACTCAATTGT
ACTTGGGAAGGAACGTTCCGTTTGTTACCTTATCCATTGGAGAAAGGTCA
TTTATTTCATCCTTATCCTACTTGCACCGAAGCAGCCGACAAAGAACTCC
TTCCTGaattccACAGAGTATCGGTGTATCCACAGAAAGAGATTCCCTTT
TTCATTCTCTTCACTGCAGCACTTTGCTCTTCATCCGCTGCTCTCGCCCT
CCTCACCTACAGATTTCCCGAACAAATGGGTTACGCTGCAAATAT
Run BLAST on NCBI

protein sequence of TCONS_00054896-protein

>TCONS_00054896-protein ID=TCONS_00054896-protein|Name=TCONS_00054896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
KRRLAMCARKLGRTKEAVKLMKDLLKEYPLLSVLNIHENLIEALLELQAY
SEVQQVLTKYDDISLPKSATICYTAALLKARNVADKFSPELAAKRGLSPA
EMSAVEAIHRAVEFNPHVPKYLLEEKSVILPAEHILKRGDSEAIAYSFFH
LQHWKRLDGALNLLNCTWEGTFRLLPYPLEKGHLFHPYPTCTEAADKELL
PEFHRVSVYPQKEIPFFILFTAALCSSSAALALLTYRFPEQMGYAAN
Run BLAST on NCBI

transcript from alignment at scaffold_246:95959..99889+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054896 ID=TCONS_00054896|Name=TCONS_00054896|organism=Clytia hemisphaerica|type=transcript|length=3931bp|location=Sequence derived from alignment at scaffold_246:95959..99889+ (Clytia hemisphaerica)
TCAAACGACGCCTGGCAATGTGTGCAAGAAAATTGGGGCGAACCAAAGAA
GCAGTCAAATTAATGAAAGAtgtaagaaaacaaaaacacttGTTTTTAAG
AATCCTTAGTTTGTTTTACTTTCTCTTATTTCGATTTTCTATTatgatca
ctttcgtttttcttGTTGAAAATAAAAGGTTTAGTTTTTCTAATCGTTTA
ATCTTTgttaatttcaatatttcagTTGCTGAAAGAGTACCCTTTATTAA
GTGTTCTCAACATCCACGAGAATTTGATCGAAGCACTACTAGAACTACAA
GCATATTCTGAAGTGCAGGTAGATAGAATTTAGAACAATGAGGAAAATTC
ATTATCACAGAGACATTATTGCAACCATTTTTTATGATTATGCCTTGCTg
taaaatataaagttatgCTCCTTCCTCTAAATTTTACGTTCAACTTTCCT
ACTTTACATGGTTGATATGTTTGTAATTTACTTTTTCGGAAGTGACTGGT
TGTTGTTGACCAAGGGTGAccgtaaaatttaattttttgatttttatttt
ttagcaagTACTGACGAAATATGATGGTGAGTCTTggttttttaatttga
attaaaatttaGATTATGAAAAAGAATTCCAGGGGATTATTATTGCAAAG
catttattttttaaccaaaatttatGTATTTTCTTTCTGTATTATGAACA
TTGTGTCAGTTCTTTTGACAGGTTGCATCCTCATAGCAGGATGGGATGCA
GGTTTATTAAAAGTCAACCCGGTTAATTCTTTTCAAATCAGACATTTATC
AATCTGCAACAtactctttttgtttttgtttagatATCAGTCTTCCAAAA
TCTGCAACAATATGTTACACAGCCGCCCTCTTGAAAGCAAGAAATGTAGC
TGACAAGTAAGTCCTTTCTCCTCCTGTCCTACAAACTTGACTCGTCCATC
TTGTAAAGCCAGATCTGTAACAACTCAAATATGACAATATGAGTGATCTT
CACTCAGTCTTGAAACATGTTCTATATAGGAATTGGTAAGTTGCATATTG
ATAATTTCAGATTTTCACCAGAGCTAGCAGCAAAGAGAGGTTTGAGTCCA
GCAGAGATGAGCGCAGTAGAAGCAATACACAGAGCTGTTGAATTCAACCC
ACACGTACCTAAGGTTcgtaaaaaaatctcttttccttgTTAATGACAAA
TATAAAAGTCTATATTATCATATATATGAAAGAAAGTTTTCCTTGAACTA
TCTACACTTTTGCTCTTGTTTTTGTTCCGATTCTTATAAAACCTTTTTTG
TTGATCAGTATTTATTAGAAGAGAAGAGCGTCATTCTTCCAGCAGAACAC
ATCCTGAAACGTGGCGATAGTGAAGCCATTGCATATTCTTTCTTTCACCT
TCAACACTGGAAACGTCTAGATGGTGCTCTCAATCTACTCAATTGTACTT
GGGAAGGAAGTAAGCGCTTTTGCCATCGCCTTTTTGATGTGACCCCGTTC
TTTTACTATCATTTGCGGAAGCGAGCtaagggaccattcaaaaagtacgt
acgctctaAGGAGGGTCCTTCGAAAAGCGTACGAAAGCGTACATGGGGGA
GGGGGTCAATCAAGGAAATGTGCGTACGCTTTGCAAACTCTTTCAAACTG
TTTTTTCCACCTTTTTCTAACTTTCtacatttgaaaaatggaaatattAT
AAATCTTTCAACCCATGTTAATTGTGTTATCCATATGTCAACCTGTTATA
ATCTTTTAGTTTCTTTAACTTTATATCGTTACAATCAAGACCCAGGAAGG
GGGGAGGGGTAATTGGAAAAGCGTACGTACGTACGTGGAAGGGGGTACTA
TCAAAGCGTACGTGAGCGTACAAGGAGGGAAGGGGTAGAATTTTGCTTAC
TtttgagcgtacgtactttttgaattgtCCCTTAATGGAAAATCAAATAT
TGCACACCTTCCCATAATCGGTGATAGCTGCCCACTCCATTATGTGATAA
CATATCCTTACATGAGAGAATAATGATAATATACTTCCTAATGTCTAATC
CTAATGATATAAAATTCGATTTACTTTTAGCGTTCCGTTTGTTACCTTAT
CCATTGGAGAAAGGTCATTTATTTCATCCTTATCCTACTTGCACCGAAGC
AGCCGACAAAGAACTCCTTCCTGGTGAGTGTCATTGACCATTCATTCATT
CGCATTCATTCATTTGTGTGAAATGATTTCTTTGTTGGGGTTACTCAGAA
GCGCAAAATAACAGTGACAAAATGTGGCTCCCTGTTGTTTATACATATTC
AGTTAGACGCTAGCGTGAACCAAACTCAACTTCTAAGGGAAAGATCCGGC
AATTACGGTTTGTAAGGGTTGGCACCATCCAGTATCAGAGACATCTCTTG
TTACCTCTACCCGTAACAGACCGAAACACGGCAAGATNaaaattggaaaa
atcataaaaagttccatacactaaaattttattatgatcttcatcaaaga
taaaaaacaaagtgaatttttgatccaaaaaatactttttggaaaatttg
cttggtaccttaccaaccctgataaatgaaaaatttattcttattttacc
gaccgaccgaccaaccgacccatatttttctaacaatctacccgtagaac
aacaaattaaattggtcttgcattacttttggtttttaatttctctaaac
ttttatgttttcatgcaaggtgtgatctgatccttaaaatgcaaaaatga
agacattctattgcattctctaaaagtgcacacacatgtaaatagagctt
tgtgaatgccataaaatttttcccctatactgggacctaaaattttatca
gactggggggacctaaatttggcggggggacctagaaccccagtcggagc
catgaCGCTTTGCAAACTCTTTCAAACTGTTTTTTCCAGCTTTTTCTAAC
TTTCtacatttgaaaaatggaaatattATAAACCTTTCAACCCATCTTAA
TTGTGTTATCCGTATGTCAACCTATTATAATCTTTTAGTTTCTTTAACTT
TATATCATTACAATCAAGACTCCACTTTTTTTCTACAGGAAGGAGGGGGT
AATCGGAAAAGCGTACGTACGTGGTACTATCAAAGCGTACGTGAGCGTAC
AAGGAGGGAAGGGGTagaatttttcttacttttgagcgtacgtacttttt
gaattgtCCCTTAATGGAAAATCAAATAGTGTACACCTTCCCGTAATGGA
TGATAGCTGCCTACTCCATTATGTGATAACATATCCTTACATGAGAGAAT
AATGATAATATGCTTTCTAATGTCTAATCTTAATGATATAAAATTCGATT
TACTTTTAGCGTTCCGTTTGTTACCTTATCCATTGGAGAAAGGTCATTTA
TTTCATCCTTATCCTACTTGCACCGAAGCAGCCGACAAAGAACTCCTTCC
TGGTGAGTGTCATTGACCATTCATTCATTCGCATTCATTCATTTGTGTGA
AATGATTTCTTTGTTGGGGTTACTCAGAAGCGCAAAATAACAGTGACAAA
ATGTGGCTCCCTGTTGTTTATACATATTCAGTTAGACGCTAGCGTGAACC
AAACTCAACTTCTAAGGGAAAGATCCGGCAATTACGGTTTGTAAGGGTTG
GCACCATCCAGTATCAGAGACATCTCTTGTTACCTCTACCCGTAACAGAC
CGAAACACggcaagattttcaaaaaagcaaaattcGCTTTGGTTACCCCT
GGTTACCCATATGatattttttcattgcattttattttttagaattccAC
AGAGTATCGGTGTATCCACAGAAAGAGATTCCCTTTTTCATTCTCTTCAC
TGCAGCACTTTGCTCTTCATCCGCTGCTCTCGCCCTCCTCACCTACAGAT
TTCCCGAACAAATGGGTTACGCTGCAAATAT

Coding sequence (CDS) from alignment at scaffold_246:95959..99889+

>TCONS_00054896 ID=TCONS_00054896|Name=TCONS_00054896|organism=Clytia hemisphaerica|type=CDS|length=5928bp|location=Sequence derived from alignment at scaffold_246:95959..99889+ (Clytia hemisphaerica)
AAACGACGCCTGGCAATGTGTGCAAGAAAATTGGGGCGAACCAAAGAAGC
AGTCAAATTAATGAAAGAtTTGCTGAAAGAGTACCCTTTATTAAGTGTTC
TCAACATCCACGAGAATTTGATCGAAGCACTACTAGAACTACAAGCATAT
TCTGAAGTGCAGcaagTACTGACGAAATATGATGatATCAGTCTTCCAAA
ATCTGCAACAATATGTTACACAGCCGCCCTCTTGAAAGCAAGAAATGTAG
CTGACAAATTTTCACCAGAGCTAGCAGCAAAGAGAGGTTTGAGTCCAGCA
GAGATGAGCGCAGTAGAAGCAATACACAGAGCTGTTGAATTCAACCCACA
CGTACCTAAGTATTTATTAGAAGAGAAGAGCGTCATTCTTCCAGCAGAAC
ACATCCTGAAACGTGGCGATAGTGAAGCCATTGCATATTCTTTCTTTCAC
CTTCAACACTGGAAACGTCTAGATGGTGCTCTCAATCTACTCAATTGTAC
TTGGGAAGGAACGTTCCGTTTGTTACCTTATCCATTGGAGAAAGGTCATT
TATTTCATCCTTATCCTACTTGCACCGAAGCAGCCGACAAAGAACTCCTT
CCTGaattccACAGAGTATCGGTGTATCCACAGAAAGAGATTCCCTTTTT
CATTCTCTTCACTGCAGCACTTTGCTCTTCATCCGCTGCTCTCGCCCTCC
TCACCTACAGATTTCCCGAACAAATGGGTTACGCTGCAAATAAACGACGC
CTGGCAATGTGTGCAAGAAAATTGGGGCGAACCAAAGAAGCAGTCAAATT
AATGAAAGAtTTGCTGAAAGAGTACCCTTTATTAAGTGTTCTCAACATCC
ACGAGAATTTGATCGAAGCACTACTAGAACTACAAGCATATTCTGAAGTG
CAGcaagTACTGACGAAATATGATGatATCAGTCTTCCAAAATCTGCAAC
AATATGTTACACAGCCGCCCTCTTGAAAGCAAGAAATGTAGCTGACAAAT
TTTCACCAGAGCTAGCAGCAAAGAGAGGTTTGAGTCCAGCAGAGATGAGC
GCAGTAGAAGCAATACACAGAGCTGTTGAATTCAACCCACACGTACCTAA
GTATTTATTAGAAGAGAAGAGCGTCATTCTTCCAGCAGAACACATCCTGA
AACGTGGCGATAGTGAAGCCATTGCATATTCTTTCTTTCACCTTCAACAC
TGGAAACGTCTAGATGGTGCTCTCAATCTACTCAATTGTACTTGGGAAGG
AACGTTCCGTTTGTTACCTTATCCATTGGAGAAAGGTCATTTATTTCATC
CTTATCCTACTTGCACCGAAGCAGCCGACAAAGAACTCCTTCCTGaattc
cACAGAGTATCGGTGTATCCACAGAAAGAGATTCCCTTTTTCATTCTCTT
CACTGCAGCACTTTGCTCTTCATCCGCTGCTCTCGCCCTCCTCACCTACA
GATTTCCCGAACAAATGGGTTACGCTGCAAATAAACGACGCCTGGCAATG
TGTGCAAGAAAATTGGGGCGAACCAAAGAAGCAGTCAAATTAATGAAAGA
tTTGCTGAAAGAGTACCCTTTATTAAGTGTTCTCAACATCCACGAGAATT
TGATCGAAGCACTACTAGAACTACAAGCATATTCTGAAGTGCAGcaagTA
CTGACGAAATATGATGatATCAGTCTTCCAAAATCTGCAACAATATGTTA
CACAGCCGCCCTCTTGAAAGCAAGAAATGTAGCTGACAAATTTTCACCAG
AGCTAGCAGCAAAGAGAGGTTTGAGTCCAGCAGAGATGAGCGCAGTAGAA
GCAATACACAGAGCTGTTGAATTCAACCCACACGTACCTAAGTATTTATT
AGAAGAGAAGAGCGTCATTCTTCCAGCAGAACACATCCTGAAACGTGGCG
ATAGTGAAGCCATTGCATATTCTTTCTTTCACCTTCAACACTGGAAACGT
CTAGATGGTGCTCTCAATCTACTCAATTGTACTTGGGAAGGAACGTTCCG
TTTGTTACCTTATCCATTGGAGAAAGGTCATTTATTTCATCCTTATCCTA
CTTGCACCGAAGCAGCCGACAAAGAACTCCTTCCTGaattccACAGAGTA
TCGGTGTATCCACAGAAAGAGATTCCCTTTTTCATTCTCTTCACTGCAGC
ACTTTGCTCTTCATCCGCTGCTCTCGCCCTCCTCACCTACAGATTTCCCG
AACAAATGGGTTACGCTGCAAATAAACGACGCCTGGCAATGTGTGCAAGA
AAATTGGGGCGAACCAAAGAAGCAGTCAAATTAATGAAAGAtTTGCTGAA
AGAGTACCCTTTATTAAGTGTTCTCAACATCCACGAGAATTTGATCGAAG
CACTACTAGAACTACAAGCATATTCTGAAGTGCAGcaagTACTGACGAAA
TATGATGatATCAGTCTTCCAAAATCTGCAACAATATGTTACACAGCCGC
CCTCTTGAAAGCAAGAAATGTAGCTGACAAATTTTCACCAGAGCTAGCAG
CAAAGAGAGGTTTGAGTCCAGCAGAGATGAGCGCAGTAGAAGCAATACAC
AGAGCTGTTGAATTCAACCCACACGTACCTAAGTATTTATTAGAAGAGAA
GAGCGTCATTCTTCCAGCAGAACACATCCTGAAACGTGGCGATAGTGAAG
CCATTGCATATTCTTTCTTTCACCTTCAACACTGGAAACGTCTAGATGGT
GCTCTCAATCTACTCAATTGTACTTGGGAAGGAACGTTCCGTTTGTTACC
TTATCCATTGGAGAAAGGTCATTTATTTCATCCTTATCCTACTTGCACCG
AAGCAGCCGACAAAGAACTCCTTCCTGaattccACAGAGTATCGGTGTAT
CCACAGAAAGAGATTCCCTTTTTCATTCTCTTCACTGCAGCACTTTGCTC
TTCATCCGCTGCTCTCGCCCTCCTCACCTACAGATTTCCCGAACAAATGG
GTTACGCTGCAAATAAACGACGCCTGGCAATGTGTGCAAGAAAATTGGGG
CGAACCAAAGAAGCAGTCAAATTAATGAAAGAtTTGCTGAAAGAGTACCC
TTTATTAAGTGTTCTCAACATCCACGAGAATTTGATCGAAGCACTACTAG
AACTACAAGCATATTCTGAAGTGCAGcaagTACTGACGAAATATGATGat
ATCAGTCTTCCAAAATCTGCAACAATATGTTACACAGCCGCCCTCTTGAA
AGCAAGAAATGTAGCTGACAAATTTTCACCAGAGCTAGCAGCAAAGAGAG
GTTTGAGTCCAGCAGAGATGAGCGCAGTAGAAGCAATACACAGAGCTGTT
GAATTCAACCCACACGTACCTAAGTATTTATTAGAAGAGAAGAGCGTCAT
TCTTCCAGCAGAACACATCCTGAAACGTGGCGATAGTGAAGCCATTGCAT
ATTCTTTCTTTCACCTTCAACACTGGAAACGTCTAGATGGTGCTCTCAAT
CTACTCAATTGTACTTGGGAAGGAACGTTCCGTTTGTTACCTTATCCATT
GGAGAAAGGTCATTTATTTCATCCTTATCCTACTTGCACCGAAGCAGCCG
ACAAAGAACTCCTTCCTGaattccACAGAGTATCGGTGTATCCACAGAAA
GAGATTCCCTTTTTCATTCTCTTCACTGCAGCACTTTGCTCTTCATCCGC
TGCTCTCGCCCTCCTCACCTACAGATTTCCCGAACAAATGGGTTACGCTG
CAAATAAACGACGCCTGGCAATGTGTGCAAGAAAATTGGGGCGAACCAAA
GAAGCAGTCAAATTAATGAAAGAtTTGCTGAAAGAGTACCCTTTATTAAG
TGTTCTCAACATCCACGAGAATTTGATCGAAGCACTACTAGAACTACAAG
CATATTCTGAAGTGCAGcaagTACTGACGAAATATGATGatATCAGTCTT
CCAAAATCTGCAACAATATGTTACACAGCCGCCCTCTTGAAAGCAAGAAA
TGTAGCTGACAAATTTTCACCAGAGCTAGCAGCAAAGAGAGGTTTGAGTC
CAGCAGAGATGAGCGCAGTAGAAGCAATACACAGAGCTGTTGAATTCAAC
CCACACGTACCTAAGTATTTATTAGAAGAGAAGAGCGTCATTCTTCCAGC
AGAACACATCCTGAAACGTGGCGATAGTGAAGCCATTGCATATTCTTTCT
TTCACCTTCAACACTGGAAACGTCTAGATGGTGCTCTCAATCTACTCAAT
TGTACTTGGGAAGGAACGTTCCGTTTGTTACCTTATCCATTGGAGAAAGG
TCATTTATTTCATCCTTATCCTACTTGCACCGAAGCAGCCGACAAAGAAC
TCCTTCCTGaattccACAGAGTATCGGTGTATCCACAGAAAGAGATTCCC
TTTTTCATTCTCTTCACTGCAGCACTTTGCTCTTCATCCGCTGCTCTCGC
CCTCCTCACCTACAGATTTCCCGAACAAATGGGTTACGCTGCAAATAAAC
GACGCCTGGCAATGTGTGCAAGAAAATTGGGGCGAACCAAAGAAGCAGTC
AAATTAATGAAAGAtTTGCTGAAAGAGTACCCTTTATTAAGTGTTCTCAA
CATCCACGAGAATTTGATCGAAGCACTACTAGAACTACAAGCATATTCTG
AAGTGCAGcaagTACTGACGAAATATGATGatATCAGTCTTCCAAAATCT
GCAACAATATGTTACACAGCCGCCCTCTTGAAAGCAAGAAATGTAGCTGA
CAAATTTTCACCAGAGCTAGCAGCAAAGAGAGGTTTGAGTCCAGCAGAGA
TGAGCGCAGTAGAAGCAATACACAGAGCTGTTGAATTCAACCCACACGTA
CCTAAGTATTTATTAGAAGAGAAGAGCGTCATTCTTCCAGCAGAACACAT
CCTGAAACGTGGCGATAGTGAAGCCATTGCATATTCTTTCTTTCACCTTC
AACACTGGAAACGTCTAGATGGTGCTCTCAATCTACTCAATTGTACTTGG
GAAGGAACGTTCCGTTTGTTACCTTATCCATTGGAGAAAGGTCATTTATT
TCATCCTTATCCTACTTGCACCGAAGCAGCCGACAAAGAACTCCTTCCTG
aattccACAGAGTATCGGTGTATCCACAGAAAGAGATTCCCTTTTTCATT
CTCTTCACTGCAGCACTTTGCTCTTCATCCGCTGCTCTCGCCCTCCTCAC
CTACAGATTTCCCGAACAAATGGGTTACGCTGCAAATAAACGACGCCTGG
CAATGTGTGCAAGAAAATTGGGGCGAACCAAAGAAGCAGTCAAATTAATG
AAAGAtTTGCTGAAAGAGTACCCTTTATTAAGTGTTCTCAACATCCACGA
GAATTTGATCGAAGCACTACTAGAACTACAAGCATATTCTGAAGTGCAGc
aagTACTGACGAAATATGATGatATCAGTCTTCCAAAATCTGCAACAATA
TGTTACACAGCCGCCCTCTTGAAAGCAAGAAATGTAGCTGACAAATTTTC
ACCAGAGCTAGCAGCAAAGAGAGGTTTGAGTCCAGCAGAGATGAGCGCAG
TAGAAGCAATACACAGAGCTGTTGAATTCAACCCACACGTACCTAAGTAT
TTATTAGAAGAGAAGAGCGTCATTCTTCCAGCAGAACACATCCTGAAACG
TGGCGATAGTGAAGCCATTGCATATTCTTTCTTTCACCTTCAACACTGGA
AACGTCTAGATGGTGCTCTCAATCTACTCAATTGTACTTGGGAAGGAACG
TTCCGTTTGTTACCTTATCCATTGGAGAAAGGTCATTTATTTCATCCTTA
TCCTACTTGCACCGAAGCAGCCGACAAAGAACTCCTTCCTGaattccACA
GAGTATCGGTGTATCCACAGAAAGAGATTCCCTTTTTCATTCTCTTCACT
GCAGCACTTTGCTCTTCATCCGCTGCTCTCGCCCTCCTCACCTACAGATT
TCCCGAACAAATGGGTTACGCTGCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034592XLOC_034592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054896-exon-scaffold_246-1491911889:95959..96029TCONS_00054896-exon-scaffold_246-1491911889:95959..96029Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1510915933:95959..96029TCONS_00054896-exon-scaffold_246-1510915933:95959..96029Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1575043694:95959..96029TCONS_00054896-exon-scaffold_246-1575043694:95959..96029Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1491911889:96184..96276TCONS_00054896-exon-scaffold_246-1491911889:96184..96276Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1510915933:96184..96276TCONS_00054896-exon-scaffold_246-1510915933:96184..96276Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1575043694:96184..96276TCONS_00054896-exon-scaffold_246-1575043694:96184..96276Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1491911889:96513..96534TCONS_00054896-exon-scaffold_246-1491911889:96513..96534Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1510915933:96513..96534TCONS_00054896-exon-scaffold_246-1510915933:96513..96534Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1575043694:96513..96534TCONS_00054896-exon-scaffold_246-1575043694:96513..96534Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1491911889:96792..96864TCONS_00054896-exon-scaffold_246-1491911889:96792..96864Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1510915933:96792..96864TCONS_00054896-exon-scaffold_246-1510915933:96792..96864Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1575043694:96792..96864TCONS_00054896-exon-scaffold_246-1575043694:96792..96864Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1491911889:97019..97121TCONS_00054896-exon-scaffold_246-1491911889:97019..97121Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1510915933:97019..97121TCONS_00054896-exon-scaffold_246-1510915933:97019..97121Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1575043694:97019..97121TCONS_00054896-exon-scaffold_246-1575043694:97019..97121Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1491911889:97267..97417TCONS_00054896-exon-scaffold_246-1491911889:97267..97417Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1510915933:97267..97417TCONS_00054896-exon-scaffold_246-1510915933:97267..97417Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1575043694:97267..97417TCONS_00054896-exon-scaffold_246-1575043694:97267..97417Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1491911889:98039..98131TCONS_00054896-exon-scaffold_246-1491911889:98039..98131Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1510915933:98039..98131TCONS_00054896-exon-scaffold_246-1510915933:98039..98131Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1575043694:98039..98131TCONS_00054896-exon-scaffold_246-1575043694:98039..98131Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1491911889:99751..99889TCONS_00054896-exon-scaffold_246-1491911889:99751..99889Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1510915933:99751..99889TCONS_00054896-exon-scaffold_246-1510915933:99751..99889Clytia hemisphaericaexon
TCONS_00054896-exon-scaffold_246-1575043694:99751..99889TCONS_00054896-exon-scaffold_246-1575043694:99751..99889Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054896-proteinTCONS_00054896-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:95959..99889 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
56.0902	52.1046	25.1388	20.674	31.2952	24.8597	21.7662	24.2433	22.1035	26.5683	19.8208	20.2	10.6108	10.5338	15.2465	16.7836	16.902	18.9979	6.92049	8.8195	8.73256	10.7563	33.6682	29.7083	12.5611	14.4605	11.9961	9.37346	21.3707	21.6661
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007311ST7
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00054896 vs. Swiss-Prot (Human)
Match: ST7 (Suppressor of tumorigenicity 7 protein OS=Homo sapiens GN=ST7 PE=1 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.524e-130
Identity = 199/246 (80.89%), Postives = 227/246 (92.28%), Query Frame = 3 
Query:    3 KRRLAMCARKLGRTKEAVKLMKDLLKEYPLLSVLNIHENLIEALLELQAYSEVQQVLTKYDDISLPKSATICYTAALLKARNVADKFSPELAAKRGLSPAEMSAVEAIHRAVEFNPHVPKYLLEEKSVILPAEHILKRGDSEAIAYSFFHLQHWKRLDGALNLLNCTWEGTFRLLPYPLEKGHLFHPYPTCTEAADKELLPEFHRVSVYPQKEIPFFILFTXXXXXXXXXXXXXTYRFPEQMGYAA 740
            KRRLAMCAR+LGRT+EAVK+M+DL+KE+PLLS+ NIHENL+EALLELQAY++VQ VL KYDDISLPKSATICYTAALLKAR V+DKFSPE A++RGLS AEM+AVEAIHRAVEFNPHVPKYLLE KS+ILP EHILKRGDSEAIAY+FFHL HWKR++GALNLL+CTWEGTFR++PYPLEKGHLF+PYP CTE AD+ELLP FH VSVYP+KE+PFFILFTA LCS +A LALLT++FPE MG  A
Sbjct:  299 KRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFA 544
The following BLAST results are available for this feature:
BLAST of TCONS_00054896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST72.524e-13080.89Suppressor of tumorigenicity 7 protein OS=Homo sap... [more]
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