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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055232 ID=TCONS_00055232|Name=TCONS_00055232|organism=Clytia hemisphaerica|type=transcript|length=785bpRun BLAST on NCBI protein sequence of TCONS_00055232-protein >TCONS_00055232-protein ID=TCONS_00055232-protein|Name=TCONS_00055232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp QTVKYLREKQMSIEKESFLQDIRQEELHVVDFMKLWFKYDKNKDGYLQKNRun BLAST on NCBI transcript from alignment at scaffold_251:531954..542636- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055232 ID=TCONS_00055232|Name=TCONS_00055232|organism=Clytia hemisphaerica|type=transcript|length=10683bp|location=Sequence derived from alignment at scaffold_251:531954..542636- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_251:531954..542636- >TCONS_00055232 ID=TCONS_00055232|Name=TCONS_00055232|organism=Clytia hemisphaerica|type=CDS|length=5103bp|location=Sequence derived from alignment at scaffold_251:531954..542636- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055232 vs. Swiss-Prot (Human)
Match: CALB2 (Calretinin OS=Homo sapiens GN=CALB2 PE=2 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.082e-24 Identity = 55/167 (32.93%), Postives = 98/167 (58.68%), Query Frame = 1
Query: 28 QMSIEKESFLQDIRQEELHVVDFMKLWFKYDKNKDGYLQKNEMEDFLREMLEKKGKV---DRLEEYYKSCLSNFDLNHDGLIELREFALIVPVEKNYLEQFSESGAFTVEEYTKVFQHYDRDNNQYIEKEELVSFLRDLRKTQDEEPTTTDLEVYKGFILQCCDSNK 519
Q+ +E+FL RQ +FM+ W KYD ++ GY++ NE++ FL ++L+K + +L+EY ++ L FDLN DG + L E + ++PV++N+L +F + T EE+ +F YD+D + YI++ EL + L+DL + +E L Y+ ++ ++ K
Sbjct: 90 QILPTEENFLLCFRQHVGSSAEFMEAWRKYDTDRSGYIEANELKGFLSDLLKKANRPYDEPKLQEYTQTILRMFDLNGDGKLGLSEMSRLLPVQENFLLKF-QGMKLTSEEFNAIFTFYDKDRSGYIDEHELDALLKDLYEKNKKEMNIQQLTNYRKSVMSLAEAGK 255 HSP 2 Score: 90.5077 bits (223), Expect = 2.788e-21 Identity = 56/167 (33.53%), Postives = 89/167 (53.29%), Query Frame = 1
Query: 76 ELHVVDFMKLWFKYDKNKDGYLQKNEMEDFLREM-LEKKG-----KVDRLEEYYKSCLSNFDLNHDGLIELREFALIVPVEKNYLEQFSESGAFTVEEYTKVFQHYDRDNNQYIEKEELVSFLRDLRKTQDEEPTTTDLEVYKGFILQCCDSNKDGRISFTELKLLL 558
EL F+++W +D + +GY++ E+E+F +E+ +KG K D E K + +D N DG IE+ E A I+P E+N+L F + + E + + ++ YD D + YIE EL FL DL K + L+ Y IL+ D N DG++ +E+ LL
Sbjct: 15 ELTASQFLEIWKHFDADGNGYIEGKELENFFQELEKARKGSGMMSKSDNFGEKMKEFMQKYDKNSDGKIEMAELAQILPTEENFLLCFRQHVGSSAE-FMEAWRKYDTDRSGYIEANELKGFLSDLLKKANRPYDEPKLQEYTQTILRMFDLNGDGKLGLSEMSRLL 180 The following BLAST results are available for this feature:
BLAST of TCONS_00055232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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