TCONS_00055249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055249
Unique NameTCONS_00055249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2155

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055249 ID=TCONS_00055249|Name=TCONS_00055249|organism=Clytia hemisphaerica|type=transcript|length=2155bp
atttttacataaaaaGCACGATGTCCCCTCGAGCGTTGAGACCAAAAAGA
AGTTTGATAAATAGTGATTTTGAAGGTTATAAACTAAACACAGATGGCTT
AAAAGCAACATCTAAGCCACTTTTATCAAAAGTGTACCAAGTAAAGAGAG
ATCCAAATAAATTCACTTTCAACTATGTCAAGCGTCAGCTAATgcacaat
catttgtttttcaatcaatGGAGCAATGATATCTTTTTTGTTGATGAAAA
CTTAAACATTGTTCTTATACAAGCTGAAAAGGCTGAATTTCAGTATTATA
CTGTTGCCAAACTTGAAAGCCATGGAGAAGATCTGAACAGTTTCAGTCCA
ACAATTTCTTTTCCAACAGAAAATCTCTGCATCACATCATCAGGATGCGG
TATTCTTCATTTGATGAAGATTCACAAGGATGGTCAATCAAAGCAATTCC
GCCCATTAGCCACAGGACTAATTCATGATTTCAACACACCCATATCCATT
CTCAATTCACATCACGACCCAACAACCAATATAATACATGTTTTGGTTCT
TTCCTTAAAAGACTTTGAAGAGGATGAAAAATCTGTTTCTTACGCGCTTT
TGCATTGGCTTCAAATATCAAACAGTCCAAATGATGACGTTGAAAGTACT
GTCCGAAATTGGAAAACTTTCAAAGGCCGTAATTTGCCACGTGAATGTTG
GCTGAGTGAGGATTACACTGAGTTGTTTGTGGCTTCAGAAACTGAATTTG
AGTTGGTCAATGTAGTAACATATGAGAGATTGCACACTGTAAGTTCACAA
GATGAAGCTGAAGATACCATCAAATACTATCATTGGCATCAATGTAAAGA
AATGCTGACCATTGTTTTCGACCTCACACTAGCTCAAGATGAGGTGGAAT
GCCAATTTCTTCACAACTTTTTGTCCATTAAACTGAAAACTGGTAAAACT
CTGTTGGAAGGGACAttggaaaaaatgattttacagGATGCTTCAAAATG
GTATATTCAAGAAGGAAGatTAGAAATCGTGTTGGTCAAGAAAACACCGG
GTGAGTTCTGGTCATCGGTCATTCCTGATGAAAAGCACGGTGTCCATGAT
ATTGAGGGAGAAGAGCTTGAAAGAATGAATCAAATACATGAGCAGCTGGA
ACACTTAACTTCTGAAGGCATTCAAAGGgAAGAAAAACATGCAAAAGATT
TCAACATTCAACAATTAGAGGAATGCGATGAGAATTTAGAAGAAGAAATC
AAAGTCTATAGTATAAACATCACAAATGGAAAAGTTCAATTAGAGacATC
ACTTGGTGGCCAAATGCTGTTTTCTACATCAGTACGTGAAGATTCAGTTC
CCCATTTTTGTTTACGTTATGATGTTGATGGAATCCTATGGCAACCTTCT
CGTAGCAAAACAACCTTTTGGGTTCACATTGCAACCATAGATGCCTTTGG
TTATGTGCTAGCTTCTAAACAGGAACATAAGTTTGTTGGTTGTTCGCCTG
ATTTCAGTTATGCTGTGATTACAGATTGTAAATCAAATGTTTATGTATAC
GAGTGTTCTCAAGGGCATTCTAAAAAGCGTGCACAGTATGTTGCAAGTTT
CAGAGAcagtgatgaaatttttggttgTATTGTTGCAAAGAATAAATTAT
GTGTATTAACAGATAACCATGTACATATTTTAGAGCTACCTGACCCAAAT
ATGGATACAAATGAGCGTTAGCTGGATTATTCTTCAATGGAATTTATTCA
AAGACTTTCTTTTGAAGGATATTTTTACTGGTACTGATAAATTGATTTGA
GCCTCACATTCTAGACCACAATACTACAGAAAACTAGCTAATTCGTCTTA
CTTACATTGATTTTTACAAAAGTAAATACTTTAACAGCCCTCAAATTTCA
GGTCGTCATTCGGCAATACCGACCAAAGAGTGTGTATGATCGGCAGTTCA
TTGCCAACCATAATCATCAATAATCTCAGCAGCAGACCATTAGTGATCTT
TTTGGTCAGCAAATCCGACCTTTGAACCAAACATTGTAGctttcaaatag
aaaaaaaacgttGCCGTAGCCTTTAAACAACTTTGCTGACCTATAATTGA
GCTCAGATCAGCATTGCCGACCTAAAAACGCCTAAGATTGGCCTAGATTG
GCAAA
Run BLAST on NCBI

transcript from alignment at scaffold_251:848517..852399-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055249 ID=TCONS_00055249|Name=TCONS_00055249|organism=Clytia hemisphaerica|type=transcript|length=3883bp|location=Sequence derived from alignment at scaffold_251:848517..852399- (Clytia hemisphaerica)
ATTTTTACATAAAAAGCACGATGTCCCCTCGAGCGTTGAGACCAAAAAGA
AGTTTGATAAATAGTGATTTTGAAGGTTATAAACTAAACACAGATGGCTT
AAAAGCAACATCTAAGCCACTTTTATCAAAAGTGTACCAAGTAAAGAGAG
ATCCAAATAAATTCACTTTCAACTATGTCAAGCGTCAGCTAATGCACAAT
CATTTGTTTTTCAATCAATGGAGCAATGATATCTTTTTTGTTGATGAAAA
CTTAAACATTGTTCTTATACAAGCTGAAAAGGTGAGTAGAAAGAGAATTT
TTTTTTTGTCTTTAACAATCTTCATATCCTGATATGTTCAAAATCACAAT
TCAAAACCCAAAACGATCTCAAAACCAAAAGTATGAATATCTTGTGGGTT
TTATTTTAGGCTGAATTTCAGTATTATACTGTTGCCAAACTTGAAAGCCA
TGGAGAAGATCTGAACAGTTTCAGTCCAACAATTTCTTTTCCAACAGAAA
ATCTCTGCATCACATCATCAGGATGCGGTATTCTTCATTTGATGAAGATT
CACAAGGATGGTCAATCAAAGCAATTCCGCCCATTAGCCACAGGACTAAT
TCATGATTTCAACACACCCATATCCATTCTCAATTCACATCACGACCCAA
CAACCAATATAATACATGTTTTGGTTCTTTCCTTAAAAGACTTTGAAGAG
GATGAAAAATCTGTTTCTTACGCGCTTTTGCATTGGCTTCAAATATCAAA
CAGTCCAAATGATGACGTTGAAAGTACTGTCCGAAATTGGAAAACTTTCA
AAGGCCGTAATTTGCCACGTGAATGTTGGCTGAGTGAGGATTACACTGAG
TTGTTTGTGGCTTCAGAAACTGAATTTGAGTTGGTCAATGTAGTAACATA
TGGTAAGAAAAAGTCATATTAGATATTCTGTTACCAACTATAAGTACATT
AAAACATTTAAACTTCTTCTCTTTGTGGCATATAAATATATTTCTGCCTC
AAGGAAATGAGTGCTGCTATGAGGGTCTGTAGAGTTTTATCTCTGAGTTT
TAACATGATAATTAAAGACTAGAAGCCACTGAAACCCTCCAAAACAAAAA
TATCCAATGAAATAAGTGGGACTAATTTTTGCCTGAACTCTAGATTCTGA
AAAAAATACACAAAATTCTCAATATGAAGAAAACCTTCATGCAAACAAAA
AACCAATCTGAACCCATACTTGCTTTATTATATATAACCTTTTATCTCTT
CCCACAGAGAGATTGCACACTGTAAGTTCACAAGATGAAGCTGAAGATAC
CATCAAATACTATCATTGGCATCAATGTAAAGAAATGCTGACCATTGTTT
TCGACCTCACACTAGCTCAAGATGAGGTGGAATGCCAATTTCTTCACAAC
TTTTTGTCCATTAAACTGAAAACTGGTAAAACTCTGTTGGAAGGGACATT
GGAAAAAATGATTTTACAGGATGCTTCAAAATGGTATATTCAAGAAGGAA
GGTAATTCATAACTCTCAAAATTCATCTTTGGCTGCTGGTATCAGTCAAT
TGATCTTCACATAAATTGATCTAAATAAATGTCACACACTTTTCATGGTC
AATTTCTAATGGATTTGATATCAGAATAATTCTAATGAAAGGTTTTCCTC
TAATTGATATAATTGAGAACAAAACCCAATGTAATTTCATCAATCTTTTT
TTTACAGATTAGAAATCGTGTTGGTCAAGAAAACACCGGGTGAGTTCTGG
TCATCGGTCATTCCTGATGAAAAGCACGGTGTCCATGATATTGAGGGAGA
AGAGCTTGAAAGAATGAATCAAATACATGAGCAGCTGGAACACTTAACTT
CTGAAGGCATTCAAAGGGTACTAAGATATTTAAACTTCTAAGTTTATTTC
TTTTTATTATAAGACTCTTTCTACTCTTGAACCTGCTAATATCCAACAGG
AACTTGAATGTAAAAATTCAATATTCCTGTATTTTCAATGCAATACGCTA
TTTCTTTTTTTCTTAATACGAATTTACTTGTAATGTGATTTTGTGGTGTA
ATAATTCTATCTAAACCTTCACCAAACTGGTTGCTTTACATGTTCATACA
ATGCCTTGATAAATTCACTACCATCAAACCGGAAGGTTATTAGGGTGCAT
ACCATTTAGCCAAAAACCCCAAAAAGTGAAACAGAGGGTTTAGCGAACGC
ATTGATTCATTTAAAAGTTTACCTAAACAGACGATCAAAGCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTAACAGCTTCTGTGT
TTAGGTAAACAAACCCAAACCATTTGCAGTTTAGTGAAACAGTTTCAGTT
TTTTGGTTTTGAACATTAAAAGGTATGCAACCTTAATTTTTTTTTCTGTA
GGAAGAAAAACATGCAAAAGATTTCAACATTCAACAATTAGAGGAATGCG
ATGAGAATTTAGAAGAAGAAATCAAAGTCTATAGTATAAACATCACAAAT
GGAAAAGTTCAATTAGAGGTGTGCTTTGTTTACGTTTTTTTTAATAATAA
TATCAACCCAGCTAACAAAAATTGTTATTTGAAGAAATGCAATAATTTTA
ACTTCTCCTGCCCTTCTCCTGCCCTCTCCTTGCATCTTGTTAGAAACAAT
TATAAATGGGAGGTATAAATCAGGATTATACTAGAAACAAATCCATAAGT
GATGTAAATTTTTTTTCTTCTAGACATCACTTGGTGGCCAAATGCTGTTT
TCTACATCAGTACGTGAAGATTCAGTTCCCCATTTTTGTTTACGTTATGA
TGTTGATGGAATCCTATGGCAACCTTCTCGTAGCAAAACAACCTTTTGGG
TTCACATTGCAACCATAGATGCCTTTGGTTATGTGCTAGCTTCTAAACAG
GAACATAAGTTTGTTGGTTGTTCGCCTGATTTCAGTTATGCTGTGATTAC
AGATTGTAAATCAAATGTTTATGTATACGAGTGTTCTCAAGGGCATTCTA
AAAAGCGTGCACAGTATGTTGCAAGTTTCAGAGACAGTGATGAAATTTTT
GGTTGTATTGTTGCAAAGAATAAATTATGTGTATTAACAGATAACCATGT
ACATATTTTAGAGCTACCTGACCCAAATATGGATACAAATGAGCGTTAGC
TGGATTATTCTTCAATGGAATTTATTCAAAGACTTTCTTTTGAAGGATAT
TTTTACTGGTACTGATAAATTGATTTGAGCCTCACATTCTAGACCACAAT
ACTACAGAAAACTAGCTAATTCGTCTTACTTACATTGATTTTTACAAAAG
TAAATACTTTAACAGCCCTCAAATTTCAGGTCGTCATTCGGCAATACCGA
CCAAAGAGTGTGTATGATCGGCAGTTCATTGCCAACCATAATCATCAATA
ATCTCAGCAGCAGACCATTAGTGATCTTTTTGGTCAGCAAATCCGACCTT
TGAACCAAACATTGTAGCTTTCAAATAGAAAAAAAACGTTGCCGTAGCCT
TTAAACAACTTTGCTGACCTATAATTGAGCTCAGATCAGCATTGCCGACC
TAAAAACGCCTAAGATTGGCCTAGATTGGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034796XLOC_034796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055249-exon-scaffold_251-1575043694:852119..852399TCONS_00055249-exon-scaffold_251-1575043694:852119..852399Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1575043694:851498..851990TCONS_00055249-exon-scaffold_251-1575043694:851498..851990Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1575043694:850899..851142TCONS_00055249-exon-scaffold_251-1575043694:850899..851142Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1575043694:850533..850692TCONS_00055249-exon-scaffold_251-1575043694:850533..850692Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1575043694:849582..849698TCONS_00055249-exon-scaffold_251-1575043694:849582..849698Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1575043694:848517..849376TCONS_00055249-exon-scaffold_251-1575043694:848517..849376Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1510915933:852119..852399TCONS_00055249-exon-scaffold_251-1510915933:852119..852399Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1510915933:851498..851990TCONS_00055249-exon-scaffold_251-1510915933:851498..851990Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1510915933:850899..851142TCONS_00055249-exon-scaffold_251-1510915933:850899..851142Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1510915933:850533..850692TCONS_00055249-exon-scaffold_251-1510915933:850533..850692Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1510915933:849582..849698TCONS_00055249-exon-scaffold_251-1510915933:849582..849698Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1510915933:848517..849376TCONS_00055249-exon-scaffold_251-1510915933:848517..849376Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1491911889:852119..852399TCONS_00055249-exon-scaffold_251-1491911889:852119..852399Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1491911889:851498..851990TCONS_00055249-exon-scaffold_251-1491911889:851498..851990Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1491911889:850899..851142TCONS_00055249-exon-scaffold_251-1491911889:850899..851142Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1491911889:850533..850692TCONS_00055249-exon-scaffold_251-1491911889:850533..850692Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1491911889:849582..849698TCONS_00055249-exon-scaffold_251-1491911889:849582..849698Clytia hemisphaericaexon
TCONS_00055249-exon-scaffold_251-1491911889:848517..849376TCONS_00055249-exon-scaffold_251-1491911889:848517..849376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:848517..852399 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.40328	1.35305	4.41435	4.67958	4.06523	3.29318	4.11345	4.6918	0.364298	2.8311	1.58393	1.81533	0.0497922	1.40593	2.18564	9.70089e-05	0.0478675	2.57087	0.5774	0.621234	1.81711	2.01079	4.36797	4.86242	1.50588	2.4173	1.30293	1.1067	2.79668	3.19396
Blast
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BLAST of TCONS_00055249 vs. Swiss-Prot (Human)
Match: NUDC1 (NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.099e-45
Identity = 167/601 (27.79%), Postives = 276/601 (45.92%), Query Frame = 3 
Query:   33 ALRPKRSLINSDFEGYKLNTDGLKATSKPLLSKVYQVKRDPNKFTFNYVKRQLMHNHLFFNQWSND-IFFVDE-----NLNIVLIQAEKAEFQYYTVAKLESHGEDLNSFSPTISFPTENLCITSSGCGILHLMKIHKDGQSKQFRPLATGLIHDFNTP------ISILNSHHDPTTNIIHVLVLSLKDFEEDEKSVS-YALLHWLQISNSPNDDVESTVRNWKTFKGRNLPRECWLSEDYTELFVASETEFELVNVVTYERLHTVSSQDEAEDTI----------KYYHWHQCKEMLTIVFDLT--LAQDEVECQFLHNFLSIXXXXXXXXXXXXXXXMILQDASKWYIQEGR-LEIVLVKKTPGEFWSSVIPDEKHGVHDIEGEELERMNQ---IHEQLEHLTSEGIQ-REEKHAKDFNIQQLXXXXXXXXXXIKVYSINITNGKVQLETSLGG-QMLFSTSVREDSVPHFCLRYDVDGILWQPSRSKTT-FWVHIATIDAFGYVLASKQEHKFVGCSPDFSYAVITDCKSNVYVYECSQGHS-------------KKRAQYVASFRDSDEIFGCIVAKNKLCVLTDNHVHILELPDPN 1700
            +LR KR L++  FEGYKL+ + L      L + V +VK   +++T  ++    M+N+L  + W  D ++++D      NL ++L  A     + + +    +  +  N    +I F +      S G G L+++   + G S   +        +   P      IS+LN+      + I  L+L ++  E D K    Y  L W+ IS    D+ +  +      +G+++P            + A E +   + +V+Y+ L  V +  + E+ +            Y+W Q ++ LT+   L     +++++ QFL + ++I LK  + L        I  ++S W I+E   LEI L+KK  G  W  ++      + D +GE +    Q   I E+L HLTSE +    +K     N Q+LEECD   EE   +   +    K     +LG  Q LFS  V    +P FCLR+DVD +LWQP  SK    W HIAT +A GYV ASK++ KF  C+P++SYA + +C   V++Y      S             +   Q VAS   +D I G      +L VLT  ++ ++++   N
Sbjct:    8 SLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFGMYNYLHCDSWYQDSVYYIDTLGRIMNLTVMLDTALGKPREVFRLPTDLTACD--NRLCASIHFSSSTWVTLSDGTGRLYVIGTGERGNSASEK-WEIMFNEELGDPFIIIHSISLLNAEE----HSIATLLLRIEKEELDMKGSGFYVSLEWVTISKKNQDNKKYEIIKRDILRGKSVPH-----------YAAIEPDGNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSS-IDHESSTWIIKESNSLEISLIKKNEGLTWPELV------IGDKQGELIRDSAQCAAIAERLMHLTSEELNPNPDKEKPPCNAQELEECDIFFEESSSLCRFDGNTLKTTHVVNLGSNQYLFSVIVDPKEMPCFCLRHDVDALLWQPHSSKQDDMWEHIATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFIYRQPAPMSTVLYNRKEGRQVGQVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKVNTEN 583
The following BLAST results are available for this feature:
BLAST of TCONS_00055249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUDC11.099e-4527.79NudC domain-containing protein 1 OS=Homo sapiens G... [more]
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