TCONS_00055266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055266
Unique NameTCONS_00055266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055266 ID=TCONS_00055266|Name=TCONS_00055266|organism=Clytia hemisphaerica|type=transcript|length=1849bp
tacaaatttcCCGTATTTTGATCAGTACGGTGTTTATTTTGTTAGCCGAA
AGGAGGGTGAAGCCGAAGATCGGGAAAACAGAACAGCCGAAGCCAAAAGA
CTGAAAGAGTCGTCCGTCAACTTGGTCGATCCTAAGTATTcatttttgat
acattttgttGCTCTTTTATACTTTTGATTATATTCGCCATGGCTGCTAC
ACTTAGACCATACCTAAATGCAGTTCGCTCCACATTAGAAACGGCAATGT
GCCTGGAGAATTTTGCTTCCCAAGTTGTAGAACGTCATGTGAAACCAGAA
GTTGAGGTCCGCAGCAGCAAAGAGCTTTTACTTGCACCTCTATGTATTGC
CAGGAATGAAAAGGAGAAGGTATTGATTGAAGGTTCCATCAATTCTGTCC
GTGTTAGTATTGCAGTCAAACAAgctgatgaaattgaaaaaattctatGC
CACAAATTCATGAGATTTATGATGTTGCGAGCTGAGAACTTTTTTGTTCT
TCGAAGAAAACCAGTTGAAGGCTATGATATAAGCTTCTTAATCACTAATT
TCCATACTGAGCAAATGTACAAGAATAAATTAGTtgattttgtcattcaa
tttatGGAGGAAATTGACAAAGAGATCAGTGAAATGAAACTAGCTCTGAA
TGCAAGAGCTCGTATTTCTGCTGAAGAgttcttgaaaaacttttagattA
TCCTTCAAACTTTGGTTACgcatttgataatttttgtatTGATTGGTAGA
ATCTCTCTGTTAAAACCAGCAAAAGTGAAAACAATCATTGGGTGAAAAGA
GATGCTTTACACAGGGACGACCAAGAATGTCTTCCTCATCTAGTTTTAGT
AAGGAAATTATGACAAACTTATTTTAGAATCAATTCTGTTTTATAATTTG
TGTTATTTTGTTAgattatattcttttttatCCTTCTTgtgtaattattt
ttttgttaatcaCAATATTGTTTCACTTTGTTTACAcactcaattttgaa
attattgataTTCCTTTGAACATTTCACCTAAGCAATGTCAGTTAAAATT
GTGTCATAGTTTATTGAATCCAAACTTGCATTTTATAGCTCagaagaagc
aattattgtttcCATGATATTTAACTATACATTTCAGAGACATAAAATAT
AACTCAATTACAAATCATTTGACTGTTAAAAGGTTGTGTCTAGAAAGTag
cttttcttaaaaaataaaattttctcatttttgtaaattaggGATTATAA
TGGGGATTACCTCCAAAATTTGTACAAGTTTTGTTCAGATTcgaaatttt
aatttatttgaatAATCTTCCCCTGAAGTAATTTAtgtgtcattttttct
ttaatatcttttcaaaaagtcTTCTTTATAAATTTCAAGAAGGATGCTTT
AGGAACATGATTGCAATTTTACCGtcattttgtataagattcttgttact
tttctggaatctttccatTATTTCGACATGAGATTAGgaagggtttgttt
ctaaaggtacggaaaatcttgtgtttactcacgAAACTGCTTAACTTTAC
GAAGCTTATTTTTAAGCTTCCCAAAGTCCTGGCCTTTTCagctagaaaag
tggcaaaggaatctcggtatggaaatgggaatcttatcaagtttgacaac
ttttttgccaatattttagaaatttttctgaaattaggAAATGTATATTA
CCAAACGTGATCGTGTAACATGTCTTAACATacagttgaaaatttttaca
tttttgagaATATTATGGAAGAAGtataaatcaaaagatttttaaattga
gaTTTCTTTCCCAGCATTTTCTTTAAAGAAGTGTTGTTAGATTTTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00055266-protein

>TCONS_00055266-protein ID=TCONS_00055266-protein|Name=TCONS_00055266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MAATLRPYLNAVRSTLETAMCLENFASQVVERHVKPEVEVRSSKELLLAP
LCIARNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMLRAEN
FFVLRRKPVEGYDISFLITNFHTEQMYKNKLVDFVIQFMEEIDKEISEMK
LALNARARISAEEFLKNF
Run BLAST on NCBI

transcript from alignment at scaffold_251:328315..330163

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055266 ID=TCONS_00055266|Name=TCONS_00055266|organism=Clytia hemisphaerica|type=transcript|length=1849bp|location=Sequence derived from alignment at scaffold_251:328315..330163 (Clytia hemisphaerica)
AAAAAAAATCTAACAACACTTCTTTAAAGAAAATGCTGGGAAAGAAAtct
caatttaaaaatcttttgatttataCTTCTTCCATAATATtctcaaaaat
gtaaaaattttcaactgtATGTTAAGACATGTTACACGATCACGTTTGGT
AATATACATTTcctaatttcagaaaaatttctaaaatattggcaaaaaag
ttgtcaaacttgataagattcccatttccataccgagattcctttgccac
ttttctagctGAAAAGGCCAGGACTTTGGGAAGCTTAAAAATAAGCTTCG
TAAAGTTAAGCAGTTTcgtgagtaaacacaagattttccgtacctttaga
aacaaacccttcCTAATCTCATGTCGAAATAatggaaagattccagaaaa
gtaacaagaatcttatacaaaatgaCGGTAAAATTGCAATCATGTTCCTA
AAGCATCCTTCTTGAAATTTATAAAGAAgactttttgaaaagatattaaa
gaaaaaatgacacaTAAATTACTTCAGGGGAAGATTattcaaataaatta
aaatttcgAATCTGAACAAAACTTGTACAAATTTTGGAGGTAATCCCCAT
TATAATCcctaatttacaaaaatgagaaaattttattttttaagaaaagc
tACTTTCTAGACACAACCTTTTAACAGTCAAATGATTTGTAATTGAGTTA
TATTTTATGTCTCTGAAATGTATAGTTAAATATCATGgaaacaataattg
cttcttctGAGCTATAAAATGCAAGTTTGGATTCAATAAACTATGACACA
ATTTTAACTGACATTGCTTAGGTGAAATGTTCAAAGGAAtatcaataatt
tcaaaattgagtgTGTAAACAAAGTGAAACAATATTGtgattaacaaaaa
aataattacacAAGAAGGataaaaaagaatataatcTAACAAAATAACAC
AAATTATAAAACAGAATTGATTCTAAAATAAGTTTGTCATAATTTCCTTA
CTAAAACTAGATGAGGAAGACATTCTTGGTCGTCCCTGTGTAAAGCATCT
CTTTTCACCCAATGATTGTTTTCACTTTTGCTGGTTTTAACAGAGAGATT
CTACCAATCAatacaaaaattatcaaatgcGTAACCAAAGTTTGAAGGAT
aatctaaaagtttttcaagaacTCTTCAGCAGAAATACGAGCTCTTGCAT
TCAGAGCTAGTTTCATTTCACTGATCTCTTTGTCAATTTCCTCCataaat
tgaatgacaaaatcaACTAATTTATTCTTGTACATTTGCTCAGTATGGAA
ATTAGTGATTAAGAAGCTTATATCATAGCCTTCAACTGGTTTTCTTCGAA
GAACAAAAAAGTTCTCAGCTCGCAACATCATAAATCTCATGAATTTGTGG
CatagaattttttcaatttcatcagcTTGTTTGACTGCAATACTAACACG
GACAGAATTGATGGAACCTTCAATCAATACCTTCTCCTTTTCATTCCTGG
CAATACATAGAGGTGCAAGTAAAAGCTCTTTGCTGCTGCGGACCTCAACT
TCTGGTTTCACATGACGTTCTACAACTTGGGAAGCAAAATTCTCCAGGCA
CATTGCCGTTTCTAATGTGGAGCGAACTGCATTTAGGTATGGTCTAAGTG
TAGCAGCCATGGCGAATATAATCAAAAGTATAAAAGAGCaacaaaatgta
tcaaaaatgAATACTTAGGATCGACCAAGTTGACGGACGACTCTTTCAGT
CTTTTGGCTTCGGCTGTTCTGTTTTCCCGATCTTCGGCTTCACCCTCCTT
TCGGCTAACAAAATAAACACCGTACTGATCAAAATACGGgaaatttgta

Coding sequence (CDS) from alignment at scaffold_251:328315..330163

>TCONS_00055266 ID=TCONS_00055266|Name=TCONS_00055266|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_251:328315..330163 (Clytia hemisphaerica)
ctaaaagtttttcaagaacTCTTCAGCAGAAATACGAGCTCTTGCATTCA
GAGCTAGTTTCATTTCACTGATCTCTTTGTCAATTTCCTCCataaattga
atgacaaaatcaACTAATTTATTCTTGTACATTTGCTCAGTATGGAAATT
AGTGATTAAGAAGCTTATATCATAGCCTTCAACTGGTTTTCTTCGAAGAA
CAAAAAAGTTCTCAGCTCGCAACATCATAAATCTCATGAATTTGTGGCat
agaattttttcaatttcatcagcTTGTTTGACTGCAATACTAACACGGAC
AGAATTGATGGAACCTTCAATCAATACCTTCTCCTTTTCATTCCTGGCAA
TACATAGAGGTGCAAGTAAAAGCTCTTTGCTGCTGCGGACCTCAACTTCT
GGTTTCACATGACGTTCTACAACTTGGGAAGCAAAATTCTCCAGGCACAT
TGCCGTTTCTAATGTGGAGCGAACTGCATTTAGGTATGGTCTAAGTGTAG
CAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034809XLOC_034809Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055266-proteinTCONS_00055266-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055266-exon-scaffold_251-1491911889:328315..330163TCONS_00055266-exon-scaffold_251-1491911889:328315..330163Clytia hemisphaericaexon
TCONS_00055266-exon-scaffold_251-1510915933:328315..330163TCONS_00055266-exon-scaffold_251-1510915933:328315..330163Clytia hemisphaericaexon
TCONS_00055266-exon-scaffold_251-1575043694:328315..330163TCONS_00055266-exon-scaffold_251-1575043694:328315..330163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:328315..330163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
184.008	193.381	221.932	225.83	95.9279	63.8757	127.293	133.286	120.233	113.007	95.1851	80.6979	68.0013	67.8115	90.8979	97.3736	95.3091	91.9611	69.8892	80.6796	123.926	117.824	112.284	112.119	48.8385	63.7617	157.925	125.486	120.604	109.616
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008384ARPC4
IPR034666ARPC2/4
Vocabulary: Cellular Component
TermDefinition
GO:0005885Arp2/3 protein complex
GO:0015629actin cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0030041actin filament polymerization
GO:0034314Arp2/3 complex-mediated actin nucleation
GO:0030833regulation of actin filament polymerization
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030041 actin filament polymerization
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005885 Arp2/3 protein complex
Blast
[Close]
BLAST of TCONS_00055266 vs. Swiss-Prot (Human)
Match: ARPC4 (Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 308.916 bits (790), Expect = 2.532e-101
Identity = 149/168 (88.69%), Postives = 161/168 (95.83%), Query Frame = 1 
Query:  190 MAATLRPYLNAVRSTLETAMCLENFASQVVERHVKPEVEVRSSKELLLAPLCIARNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMLRAENFFVLRRKPVEGYDISFLITNFHTEQMYKNKLVDFVIQFMEEIDKEISEMKLALNARARISAEEFLKNF 693
            M ATLRPYL+AVR+TL+ A+CLENF+SQVVERH KPEVEVRSSKELLL P+ I+RNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMM+RAENFF+LRRKPVEGYDISFLITNFHTEQMYK+KLVDFVI FMEEIDKEISEMKL++NARARI AEEFLKNF
Sbjct:    1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
The following BLAST results are available for this feature:
BLAST of TCONS_00055266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARPC42.532e-10188.69Actin-related protein 2/3 complex subunit 4 OS=Hom... [more]
back to top