TCONS_00055297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055297
Unique NameTCONS_00055297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055297 ID=TCONS_00055297|Name=TCONS_00055297|organism=Clytia hemisphaerica|type=transcript|length=1076bp
AGAAAATACAAAAGAGACAATGGAGATAGCAAAGACGATCATTTTCTTAA
TCTGCATACAAATAACAGCATTTTTTGCATCTATTTGCATTGGTCATGAC
GAAATGACGGGCTGGATGAAATGGGTTGACGGAAGCATCGATAACGGAGG
TGTTAAGCAGACCATATCAATCGGTCTCTGGCGTGAATGTACACAGTATA
ATCGTAAGACAGATATAGGCGAACGTCGCTGTATAGTCTGCCAGGAGTTG
AAAATCACCAAGAGTCTACGGGCAGTGCAAGCATGCATCATTCTAGCATT
AATATGTAGTGTTTTGGCACTGGTGTTATCCGGCTTGATTTTCGGAGTTA
AGATTaaagcaaaattaatttcagttGCTTTATTTGGAACAGCAGTGTTT
GGGATCATTGCCATGGCGATTTTTTCGGACAAGGATAATCAGAAAAACAT
AATGGTAACCAAAGTAGCGATGGATTATGATTGGGCTTTCATTTTAGGAT
GGTTTACATCAATGGAATCTATCAACGCTTCTATATTGATCTTGATTTGG
AGCATGCGTACTGGCTCTTAGTTTGTAAGAATTGGTTTCACTTCTACAAA
ATTTATTGGTGTTGATTCAAGGTCGTAATTTGTGATTTAAGGTCGCAATT
TGCGATTCAAGGTCGTAACGATGAACATGATCAAAATATGATCTTTGTAG
GACAATACGCTTATCAAATAACATTTATGCAACACACAGCCACGACGTTT
TAATGAGAAATTATACACTCCTAAAATAGGAACACCCAGAGGAAAACACA
TTACTTCGCAATTTACTGATACATACGCTAGACTATAGATTTAAGGATAA
TACTAAGTGTCATGTTAGCTGAACTTATGGATATAACACGAGAGTTAAAA
TGTCTCTCATTCAAAATGTGCATTAGGGCGGCGGTTATCGTAAACTATCT
TAGACGAGGACGATCAAGAACTATGGTATGGTATGCGCAAATCAAAATGT
GTCATGGGAATAACCTTAACGTTTATATTGATAGAAATACATACTCTAAA
GGATTTATAATTTTATTCTTAGACAA
Run BLAST on NCBI

protein sequence of TCONS_00055297-protein

>TCONS_00055297-protein ID=TCONS_00055297-protein|Name=TCONS_00055297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
ENTKETMEIAKTIIFLICIQITAFFASICIGHDEMTGWMKWVDGSIDNGG
VKQTISIGLWRECTQYNRKTDIGERRCIVCQELKITKSLRAVQACIILAL
ICSVLALVLSGLIFGVKIKAKLISVALFGTAVFGIIAMAIFSDKDNQKNI
MVTKVAMDYDWAFILGWFTSMESINASILILIWSMRTGS
Run BLAST on NCBI

transcript from alignment at scaffold_251:886529..887604

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055297 ID=TCONS_00055297|Name=TCONS_00055297|organism=Clytia hemisphaerica|type=transcript|length=1076bp|location=Sequence derived from alignment at scaffold_251:886529..887604 (Clytia hemisphaerica)
TTGTCTAAGAATAAAATTATAAATCCTTTAGAGTATGTATTTCTATCAAT ATAAACGTTAAGGTTATTCCCATGACACATTTTGATTTGCGCATACCATA CCATAGTTCTTGATCGTCCTCGTCTAAGATAGTTTACGATAACCGCCGCC CTAATGCACATTTTGAATGAGAGACATTTTAACTCTCGTGTTATATCCAT AAGTTCAGCTAACATGACACTTAGTATTATCCTTAAATCTATAGTCTAGC GTATGTATCAGTAAATTGCGAAGTAATGTGTTTTCCTCTGGGTGTTCCTA TTTTAGGAGTGTATAATTTCTCATTAAAACGTCGTGGCTGTGTGTTGCAT AAATGTTATTTGATAAGCGTATTGTCCTACAAAGATCATATTTTGATCAT GTTCATCGTTACGACCTTGAATCGCAAATTGCGACCTTAAATCACAAATT ACGACCTTGAATCAACACCAATAAATTTTGTAGAAGTGAAACCAATTCTT ACAAACTAAGAGCCAGTACGCATGCTCCAAATCAAGATCAATATAGAAGC GTTGATAGATTCCATTGATGTAAACCATCCTAAAATGAAAGCCCAATCAT AATCCATCGCTACTTTGGTTACCATTATGTTTTTCTGATTATCCTTGTCC GAAAAAATCGCCATGGCAATGATCCCAAACACTGCTGTTCCAAATAAAGC aactgaaattaattttgctttAATCTTAACTCCGAAAATCAAGCCGGATA ACACCAGTGCCAAAACACTACATATTAATGCTAGAATGATGCATGCTTGC ACTGCCCGTAGACTCTTGGTGATTTTCAACTCCTGGCAGACTATACAGCG ACGTTCGCCTATATCTGTCTTACGATTATACTGTGTACATTCACGCCAGA GACCGATTGATATGGTCTGCTTAACACCTCCGTTATCGATGCTTCCGTCA ACCCATTTCATCCAGCCCGTCATTTCGTCATGACCAATGCAAATAGATGC AAAAAATGCTGTTATTTGTATGCAGATTAAGAAAATGATCGTCTTTGCTA TCTCCATTGTCTCTTTTGTATTTTCT

Coding sequence (CDS) from alignment at scaffold_251:886529..887604

>TCONS_00055297 ID=TCONS_00055297|Name=TCONS_00055297|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_251:886529..887604 (Clytia hemisphaerica)
CTAAGAGCCAGTACGCATGCTCCAAATCAAGATCAATATAGAAGCGTTGA
TAGATTCCATTGATGTAAACCATCCTAAAATGAAAGCCCAATCATAATCC
ATCGCTACTTTGGTTACCATTATGTTTTTCTGATTATCCTTGTCCGAAAA
AATCGCCATGGCAATGATCCCAAACACTGCTGTTCCAAATAAAGCaactg
aaattaattttgctttAATCTTAACTCCGAAAATCAAGCCGGATAACACC
AGTGCCAAAACACTACATATTAATGCTAGAATGATGCATGCTTGCACTGC
CCGTAGACTCTTGGTGATTTTCAACTCCTGGCAGACTATACAGCGACGTT
CGCCTATATCTGTCTTACGATTATACTGTGTACATTCACGCCAGAGACCG
ATTGATATGGTCTGCTTAACACCTCCGTTATCGATGCTTCCGTCAACCCA
TTTCATCCAGCCCGTCATTTCGTCATGACCAATGCAAATAGATGCAAAAA
ATGCTGTTATTTGTATGCAGATTAAGAAAATGATCGTCTTTGCTATCTCC
ATTGTCTCTTTTGTATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034840XLOC_034840Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055297-proteinTCONS_00055297-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055297-exon-scaffold_251-1491911889:886529..887604TCONS_00055297-exon-scaffold_251-1491911889:886529..887604Clytia hemisphaericaexon
TCONS_00055297-exon-scaffold_251-1510915933:886529..887604TCONS_00055297-exon-scaffold_251-1510915933:886529..887604Clytia hemisphaericaexon
TCONS_00055297-exon-scaffold_251-1575043694:886529..887604TCONS_00055297-exon-scaffold_251-1575043694:886529..887604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:886529..887604 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.362628 tpm) - - (49.5544 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.531962 0.678361 0.833973 0.362628 49.5544 35.6264 21.0437 19.1098 5.48273 8.7133 4.18721 3.51558 11.5118 11.5595 1.58003 3.91488 5.65222 5.6674 15.6596 12.9273 5.93458 4.05255 3.51887 6.52628 3.4708 4.15628 1.1783 1.07787 0.545018 0.740382
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
1002003004005006007008009001000Sequence
Match NameE-valueIdentityDescription
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