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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055297 ID=TCONS_00055297|Name=TCONS_00055297|organism=Clytia hemisphaerica|type=transcript|length=1076bp
AGAAAATACAAAAGAGACAATGGAGATAGCAAAGACGATCATTTTCTTAA
TCTGCATACAAATAACAGCATTTTTTGCATCTATTTGCATTGGTCATGAC
GAAATGACGGGCTGGATGAAATGGGTTGACGGAAGCATCGATAACGGAGG
TGTTAAGCAGACCATATCAATCGGTCTCTGGCGTGAATGTACACAGTATA
ATCGTAAGACAGATATAGGCGAACGTCGCTGTATAGTCTGCCAGGAGTTG
AAAATCACCAAGAGTCTACGGGCAGTGCAAGCATGCATCATTCTAGCATT
AATATGTAGTGTTTTGGCACTGGTGTTATCCGGCTTGATTTTCGGAGTTA
AGATTaaagcaaaattaatttcagttGCTTTATTTGGAACAGCAGTGTTT
GGGATCATTGCCATGGCGATTTTTTCGGACAAGGATAATCAGAAAAACAT
AATGGTAACCAAAGTAGCGATGGATTATGATTGGGCTTTCATTTTAGGAT
GGTTTACATCAATGGAATCTATCAACGCTTCTATATTGATCTTGATTTGG
AGCATGCGTACTGGCTCTTAGTTTGTAAGAATTGGTTTCACTTCTACAAA
ATTTATTGGTGTTGATTCAAGGTCGTAATTTGTGATTTAAGGTCGCAATT
TGCGATTCAAGGTCGTAACGATGAACATGATCAAAATATGATCTTTGTAG
GACAATACGCTTATCAAATAACATTTATGCAACACACAGCCACGACGTTT
TAATGAGAAATTATACACTCCTAAAATAGGAACACCCAGAGGAAAACACA
TTACTTCGCAATTTACTGATACATACGCTAGACTATAGATTTAAGGATAA
TACTAAGTGTCATGTTAGCTGAACTTATGGATATAACACGAGAGTTAAAA
TGTCTCTCATTCAAAATGTGCATTAGGGCGGCGGTTATCGTAAACTATCT
TAGACGAGGACGATCAAGAACTATGGTATGGTATGCGCAAATCAAAATGT
GTCATGGGAATAACCTTAACGTTTATATTGATAGAAATACATACTCTAAA
GGATTTATAATTTTATTCTTAGACAA Run BLAST on NCBI protein sequence of TCONS_00055297-protein >TCONS_00055297-protein ID=TCONS_00055297-protein|Name=TCONS_00055297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
ENTKETMEIAKTIIFLICIQITAFFASICIGHDEMTGWMKWVDGSIDNGG
VKQTISIGLWRECTQYNRKTDIGERRCIVCQELKITKSLRAVQACIILAL
ICSVLALVLSGLIFGVKIKAKLISVALFGTAVFGIIAMAIFSDKDNQKNI
MVTKVAMDYDWAFILGWFTSMESINASILILIWSMRTGS Run BLAST on NCBI transcript from alignment at scaffold_251:886529..887604 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055297 ID=TCONS_00055297|Name=TCONS_00055297|organism=Clytia hemisphaerica|type=transcript|length=1076bp|location=Sequence derived from alignment at scaffold_251:886529..887604 (Clytia hemisphaerica)
TTGTCTAAGAATAAAATTATAAATCCTTTAGAGTATGTATTTCTATCAAT
ATAAACGTTAAGGTTATTCCCATGACACATTTTGATTTGCGCATACCATA
CCATAGTTCTTGATCGTCCTCGTCTAAGATAGTTTACGATAACCGCCGCC
CTAATGCACATTTTGAATGAGAGACATTTTAACTCTCGTGTTATATCCAT
AAGTTCAGCTAACATGACACTTAGTATTATCCTTAAATCTATAGTCTAGC
GTATGTATCAGTAAATTGCGAAGTAATGTGTTTTCCTCTGGGTGTTCCTA
TTTTAGGAGTGTATAATTTCTCATTAAAACGTCGTGGCTGTGTGTTGCAT
AAATGTTATTTGATAAGCGTATTGTCCTACAAAGATCATATTTTGATCAT
GTTCATCGTTACGACCTTGAATCGCAAATTGCGACCTTAAATCACAAATT
ACGACCTTGAATCAACACCAATAAATTTTGTAGAAGTGAAACCAATTCTT
ACAAACTAAGAGCCAGTACGCATGCTCCAAATCAAGATCAATATAGAAGC
GTTGATAGATTCCATTGATGTAAACCATCCTAAAATGAAAGCCCAATCAT
AATCCATCGCTACTTTGGTTACCATTATGTTTTTCTGATTATCCTTGTCC
GAAAAAATCGCCATGGCAATGATCCCAAACACTGCTGTTCCAAATAAAGC
aactgaaattaattttgctttAATCTTAACTCCGAAAATCAAGCCGGATA
ACACCAGTGCCAAAACACTACATATTAATGCTAGAATGATGCATGCTTGC
ACTGCCCGTAGACTCTTGGTGATTTTCAACTCCTGGCAGACTATACAGCG
ACGTTCGCCTATATCTGTCTTACGATTATACTGTGTACATTCACGCCAGA
GACCGATTGATATGGTCTGCTTAACACCTCCGTTATCGATGCTTCCGTCA
ACCCATTTCATCCAGCCCGTCATTTCGTCATGACCAATGCAAATAGATGC
AAAAAATGCTGTTATTTGTATGCAGATTAAGAAAATGATCGTCTTTGCTA
TCTCCATTGTCTCTTTTGTATTTTCT Coding sequence (CDS) from alignment at scaffold_251:886529..887604 >TCONS_00055297 ID=TCONS_00055297|Name=TCONS_00055297|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_251:886529..887604 (Clytia hemisphaerica)
CTAAGAGCCAGTACGCATGCTCCAAATCAAGATCAATATAGAAGCGTTGA
TAGATTCCATTGATGTAAACCATCCTAAAATGAAAGCCCAATCATAATCC
ATCGCTACTTTGGTTACCATTATGTTTTTCTGATTATCCTTGTCCGAAAA
AATCGCCATGGCAATGATCCCAAACACTGCTGTTCCAAATAAAGCaactg
aaattaattttgctttAATCTTAACTCCGAAAATCAAGCCGGATAACACC
AGTGCCAAAACACTACATATTAATGCTAGAATGATGCATGCTTGCACTGC
CCGTAGACTCTTGGTGATTTTCAACTCCTGGCAGACTATACAGCGACGTT
CGCCTATATCTGTCTTACGATTATACTGTGTACATTCACGCCAGAGACCG
ATTGATATGGTCTGCTTAACACCTCCGTTATCGATGCTTCCGTCAACCCA
TTTCATCCAGCCCGTCATTTCGTCATGACCAATGCAAATAGATGCAAAAA
ATGCTGTTATTTGTATGCAGATTAAGAAAATGATCGTCTTTGCTATCTCC
ATTGTCTCTTTTGTATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055297-exon-scaffold_251-1491911889:886529..887604 | TCONS_00055297-exon-scaffold_251-1491911889:886529..887604 | Clytia hemisphaerica | exon |
| TCONS_00055297-exon-scaffold_251-1510915933:886529..887604 | TCONS_00055297-exon-scaffold_251-1510915933:886529..887604 | Clytia hemisphaerica | exon |
| TCONS_00055297-exon-scaffold_251-1575043694:886529..887604 | TCONS_00055297-exon-scaffold_251-1575043694:886529..887604 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:886529..887604 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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