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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055310 ID=TCONS_00055310|Name=TCONS_00055310|organism=Clytia hemisphaerica|type=transcript|length=2995bpRun BLAST on NCBI protein sequence of TCONS_00055310-protein >TCONS_00055310-protein ID=TCONS_00055310-protein|Name=TCONS_00055310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp MKKYGYFLLIFTTICLCHGKPANEENNAQIEVNIDSRGMMSLQKFGWFKPRun BLAST on NCBI transcript from alignment at scaffold_253:27625..53917+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055310 ID=TCONS_00055310|Name=TCONS_00055310|organism=Clytia hemisphaerica|type=transcript|length=26293bp|location=Sequence derived from alignment at scaffold_253:27625..53917+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:27625..53917+ >TCONS_00055310 ID=TCONS_00055310|Name=TCONS_00055310|organism=Clytia hemisphaerica|type=CDS|length=18447bp|location=Sequence derived from alignment at scaffold_253:27625..53917+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055310 vs. Swiss-Prot (Human)
Match: MMP14 (Matrix metalloproteinase-14 OS=Homo sapiens GN=MMP14 PE=1 SV=3) HSP 1 Score: 246.128 bits (627), Expect = 3.818e-70 Identity = 159/497 (31.99%), Postives = 256/497 (51.51%), Query Frame = 3
Query: 528 LQKFGWFKPKFSSEAGQIQANSEALAQSLRDFQKFAHIPVTGEYDADTQRMMQSPRCGMSDKTGDTRLK---RKKRYNRHGTKWHKKEITWAVENDNDDGITREMVQYTMKRSFDKWQAVTNLEFKELVGRPV-----NSADIRVRFERGTHDDSYPFDGPGGTLAHAFYPHDNTGLAGDVHFDDAEKYTIKDDSGRSYKKLLWVAVHELGHSIGLEHSDLKGAIMYPWYQHFEGSDFDLTDDDRLGVQMIYGGKDPAVTNLPVTAITPSTPSLQTVRKSS------CTNKIGAALLGIDGRTYIFNGQYFYILYQSGRGLMGVEEGPLLISAKFDGL-ITFDAIFRRPNDGMIIAFHGDSYTIYKGYKKLRPEEGGGTRKISDGFQKLEEGFRDVDAAIYNKENNKLYLFKGEKYWRFSTTFNSNDFVRDNNYPQSIASRWHGLPKSVDGALLWQDDKI-FFFKDNEYYRWNQRLQRVHSGYPQKLTSTFLECTKG 1970
LQ++G+ P Q + ++L+ ++ QKF + VTG+ DADT + M+ PRCG+ DK G +K R+KRY G KW EIT+ ++N + ++++F W++ T L F+E+ + ADI + F G H DS PFDG GG LAHA++P N G GD HFD AE +T++++ + VAVHELGH++GLEHS AIM P+YQ + +F L DDDR G+Q +YGG+ T +P T S PS+ K+ C + + G ++F ++F+ + R ++ P+ I + GL + + + R DG + F GD + ++ L P +++ G +DAA++ N K Y F+G KY+RF+ + D+ YP++I W G+P+S G+ + D+ +F+K N+Y+++N + +V GYP+ ++ C G
Sbjct: 39 LQQYGYLPP--GDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDKFG-AEIKANVRRKRYAIQGLKWQHNEITFCIQNYTPK-VGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIG--GDTHFDSAEPWTVRNEDLNG-NDIFLVAVHELGHALGLEHSSDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGGESGFPTKMPPQPRTTSRPSVPDKPKNPTYGPNICDGNFDTVAM-LRGEMFVFKERWFWRV----RNNQVMDGYPMPIGQFWRGLPASINTAYER-KDGKFVFFKGDKHWVFD-EASLEPGYPKHIKELGRGLPT-----DKIDAALFWMPNGKTYFFRGNKYYRFNEELRA----VDSEYPKNIKV-WEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVEPGYPKSALRDWMGCPSG 511 The following BLAST results are available for this feature:
BLAST of TCONS_00055310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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