TCONS_00055324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055324
Unique NameTCONS_00055324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055324 ID=TCONS_00055324|Name=TCONS_00055324|organism=Clytia hemisphaerica|type=transcript|length=322bp
TACAAATTCATCAATAAACATTGAAGCCCTATAAAAACCGAACTTAGAAA
CCTACAAATCATTCATTCAACAACATCTCAAGCATACAGTATAACTCAAG
ATAAGAAATCAAACAGAAATCAATTCATCATGTCTCGGATTATGTTGGCA
GTTATTCTATTCTCGGCTGTTTTCTACTCAATCGAATGCATCACATCAGG
TGGAAGTGCCCTAGTTGGTAAACGCGATACCATGGAATTATTGAAATCCT
CAGATATGCTGATGGACGACAAAACTTACTCCTATTTGGTCAAGAAAAGA
GTTGTCAACGAGTTGAGAAGNA
Run BLAST on NCBI

transcript from alignment at scaffold_253:147134..148347+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055324 ID=TCONS_00055324|Name=TCONS_00055324|organism=Clytia hemisphaerica|type=transcript|length=1214bp|location=Sequence derived from alignment at scaffold_253:147134..148347+ (Clytia hemisphaerica)
TACAAATTCATCAATAAACATTGAAGCCCTATAAAAACCGAACTTAGAAA CCTACAAATCATTCATTCAACAACATCTCAAGCATACAGTATAACTCAAG ATAAGAAATCAAACAGAAATCAATTCATCATGTCTCGGATTATGTTGGCA GTTATTCTATTCTCGGCTGTTTTCTACTCAATCGAATGCATCACATCAGG TGGAAGTGCCCTAGTTGGTAAACGCGATACCATGGAATTATTGAAATCCT CAGATATGCTGATGGACGACAAAACTTACTCCTATTTGGTCAAGAAAAGA GTGAGTTAGATTTTATCAATTTCGTACCAGACCCCCTTGCaccaattttc gaatttttgattttacgaACTTTTGTGAGTGTTATTTGAAACTTctctgt ctcacagcctcggtggaacttttttcttcagtggggataaaaattcctat tgaaattccaatggggatagcaATTCTATAGtccaaaggttaaaaaaaat ctagtggggttggttttggagtgcaatttttaaacattgaattttgagtg gggatgaaatcaaagtctcagggtattttcccaccggggacgaaattttc cagtggggctggggttccAGCGGGACAAAGAAATGTTTTGAATCATGAAA GCGAACCAAGGGGGttcaaattttagtttttactaattttcaagaaagAT TTCAGACCTGTGGTCTAAAAACTACCTATTAGAAAAAATTCGATTAAATC AATTTAATCCCCATTGCCATTGGAAAAATGTACTGTAATCCCATCTCGAC TAGATCCTTCTCATTAAAAGCTGGTAAAACATTTCTCAAGTAGTCatcga gacaggggtgtttattttTATATGATTATGACCCAAAGATTTTAATAACG TCCCATGGATCCTTTTTTCCTCTTATATGCATGCCCTTTAATAAAGTGTC TCCCTTTTCTTAGTTTTTTAGCACTTTTCCTCACATTCCACCTTCGTTTA TGTAGGAAACCTAGGTATAAGTTGAACAATCagcttaaaaatgattttaa tatgTTCTTCTCACCATTTTGAGCgaaagaaatgttcttaaattttgctc GCCATCGAAtccttctgttcttataaagtttgttcttatacaaaaaaacg TGTTAAATCTAATCTCTAATttgtcttttgtttctttcacaGGTTGTCAA CGAGTTGAGAAGNA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034855XLOC_034855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055324-exon-scaffold_253-1491911889:147134..147433TCONS_00055324-exon-scaffold_253-1491911889:147134..147433Clytia hemisphaericaexon
TCONS_00055324-exon-scaffold_253-1510915933:147134..147433TCONS_00055324-exon-scaffold_253-1510915933:147134..147433Clytia hemisphaericaexon
TCONS_00055324-exon-scaffold_253-1575043694:147134..147433TCONS_00055324-exon-scaffold_253-1575043694:147134..147433Clytia hemisphaericaexon
TCONS_00055324-exon-scaffold_253-1491911889:148326..148347TCONS_00055324-exon-scaffold_253-1491911889:148326..148347Clytia hemisphaericaexon
TCONS_00055324-exon-scaffold_253-1510915933:148326..148347TCONS_00055324-exon-scaffold_253-1510915933:148326..148347Clytia hemisphaericaexon
TCONS_00055324-exon-scaffold_253-1575043694:148326..148347TCONS_00055324-exon-scaffold_253-1575043694:148326..148347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:147134..148347 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.513986 0 0 0 0 0 0 0 0 0 54.5848 39.8007 0 0.191302 17.1264 18.4035 211.065 296.386 107.443 89.1249 27.7215 103.036 149.418 94.7162 17.5299 4.95859 40.7253 35.2175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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