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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055327 ID=TCONS_00055327|Name=TCONS_00055327|organism=Clytia hemisphaerica|type=transcript|length=4225bpRun BLAST on NCBI protein sequence of TCONS_00055327-protein >TCONS_00055327-protein ID=TCONS_00055327-protein|Name=TCONS_00055327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=733bp MADNTHMTKEVSNLFDELFSEDYESLKNVDQVFIDYQKQETSLKTAIEESRun BLAST on NCBI transcript from alignment at scaffold_253:163528..191676+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055327 ID=TCONS_00055327|Name=TCONS_00055327|organism=Clytia hemisphaerica|type=transcript|length=28149bp|location=Sequence derived from alignment at scaffold_253:163528..191676+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:163528..191676+ >TCONS_00055327 ID=TCONS_00055327|Name=TCONS_00055327|organism=Clytia hemisphaerica|type=CDS|length=30828bp|location=Sequence derived from alignment at scaffold_253:163528..191676+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055327 vs. Swiss-Prot (Human)
Match: RINT1 (RAD50-interacting protein 1 OS=Homo sapiens GN=RINT1 PE=1 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 2.623e-77 Identity = 199/688 (28.92%), Postives = 350/688 (50.87%), Query Frame = 2
Query: 290 QELESISEQITSLLTQYQTHIDTVTKPKDELESKVIQNEQLEQEICYKLWVDKIQSQSSAVKKSINSSDIKNAVDQHYILYQICAALQSSACGNLRNFSYDVCEKLYQELRASIESKLSVLLTTMKFPFAN-------GVSAPVFNQKEETEEQFKNLLTIAVKLQSL--------SIDSKYSL---------VTLLLTDPFKKRFHFHFYGDRHTNNVEKPEWFLTQILNWKRDHMQFIEGYINPLLKECTKDEEFSLKDEFLEILLDLCEEKLRKTLKQCLDDDVLLAHLIDETMVFDKELQLLTPGQPE--MNCIKVLLEEENLKHWIDLEKKLAMEVITDLIEKPNNWQPKFSDVVVIEKKLSFYVPKCVEEFVTMVSMMMNRYENISERSSQKLFMVVLNDTINSFVLEMKQKASVEHIRPESQAYCSIMNGAFYLHHILTEWSSDIRFLS-------ILIDGDTKXXXXXXXXXXXXXXIARPFDTEIQTLEKFLDELIDWLIKYMTDGLKNKLKPYKAESWHSLPRIKDYVIPTLSSGACSLMLFIKEHLHSLEEKCYHDVFDKIWREFCYSIDELLFTEIVCECHFNEGGASQLQFDIKKNLYVLFGQYTLRVENYFKRLRESCIXXXXXXXXXXXIKERLKVSTAENSDEIQDILEEHDIHVLSFEHVNRIIHSRVDWP 2254
Q L EQ T L + +H+ T D+L + + Q E++E+ + Y W+ +I+ S +++ + ++++ A + ++ LQ S+C +L F + ++ L+ + S +L + +PF G+S P E + L +KLQ+ + KYSL + ++LT P +KRF +HF G+R TN + KPEW+L Q+L W +H +F++ I P+L + L EF L+ L EKL + L DD L HL+DE ++F++EL + G P +C+ +L EE + W+ +E+K A++ + ++ W ++ D+ +++ VP C E F+T++ ++ +RY+N+ S + F+ + D ++ F + + Q E YC+I+N Y+ +L +W+ ++ FL + + +T + A E + FD I LE+ +++ + ++ +K+ K YK E W SLP + + +LSS AC L+L +++HL LE++ +F W+ +D ++ EI+ HFNEGGA+QLQFD+ +NL+ LF Y R ENYFK ++E+CI+LNL GSALL+K+ L+ +A L E I+ L+ + V +++ R +WP
Sbjct: 115 QFLNQFLEQETHLFSAINSHLLTAQPWMDDLGTMISQIEEIERHLAYLKWISQIEELSDNIQQYLMTNNVPEAASTLVSMAELDIKLQESSCTHLLGFMRATVKFWHKILKDKLTSDFEEILAQLHWPFIAPPQSQTVGLSRPA--SAPEIYSYLETLFCQLLKLQTSDELLTEPKQLPEKYSLPASPSVILPIQVMLT-PLQKRFRYHFRGNRQTNVLSKPEWYLAQVLMWIGNHTEFLDEKIQPILDKVGSLVNARL--EFSRGLMMLVLEKLATDIPCLLYDDNLFCHLVDEVLLFERELHSVH-GYPGTFASCMHILSEETCFQRWLTVERKFALQKMDSMLSSEAAWVSQYKDITDVDE---MKVPDCAETFMTLLLVITDRYKNLPTASRKLQFLELQKDLVDDFRIRLTQVMKEETRASLGFRYCAILNAVNYISTVLADWADNVFFLQLQQAALEVFAENNTLSKLQLGQLASMESSV---FDDMINLLERLKHDMLTRQVDHVFREVKDAAKLYKKERWLSLPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEKLDVYIYQEIILANHFNEGGAAQLQFDMTRNLFPLFSHYCKRPENYFKHIKEACIVLNLNVGSALLLKDVLQ--SASGQLPATAALNEVGIYKLAQQDVEILLNLRTNWP 788 The following BLAST results are available for this feature:
BLAST of TCONS_00055327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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