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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055336 ID=TCONS_00055336|Name=TCONS_00055336|organism=Clytia hemisphaerica|type=transcript|length=3578bpRun BLAST on NCBI protein sequence of TCONS_00055336-protein >TCONS_00055336-protein ID=TCONS_00055336-protein|Name=TCONS_00055336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=688bp MGKPNYDSNTFNKKKNSSNPDREKPAAGSRMRDKATIKRLKMYKGGKPVRRun BLAST on NCBI transcript from alignment at scaffold_253:307935..333265+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055336 ID=TCONS_00055336|Name=TCONS_00055336|organism=Clytia hemisphaerica|type=transcript|length=25331bp|location=Sequence derived from alignment at scaffold_253:307935..333265+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:307935..333265+ >TCONS_00055336 ID=TCONS_00055336|Name=TCONS_00055336|organism=Clytia hemisphaerica|type=CDS|length=31005bp|location=Sequence derived from alignment at scaffold_253:307935..333265+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055336 vs. Swiss-Prot (Human)
Match: NOG2 (Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1) HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0 Identity = 294/445 (66.07%), Postives = 356/445 (80.00%), Query Frame = 2
Query: 1424 PDREKPAAGSRMRDKATIKRLKMYKGGKPVRDKKGKIIIAAEYQSKVKSGEVARVEPNRKWFGNTKVITQNALQTFQDEMGKAMSNPYKVVMKASKLPLSLLNDRQK--TARVHLLDTESFENTFGPKSHRKRANIXXXXXXXXXXXXEQNTDAYDKTKDGDLLENSEIVEKDEARDPKFSKGQSKRIWNELYKVIDSSDVVIQVLDARDPNGTRSKHIEDFMKNEKKHKHLIFILNKCDLVPTWVTRKWVALLSSEVPTLAFHASVTNPFGKGALIQLLRQFGKLHQGKKNISVGFIGYPNVGKSSIINTLKKKKVCKAAPIPGETKVWQYVTLMRKIYLIDCPGVVYPSGDTETEIVLKGVVRVENLKVPSEHITEVLNRVKEEYIRNTYKIQHWEDAEDFMEQFCKKSGRLLKGGEPDIETGARMILHDFQRGRLPYFVPPP 2752
PDR + A G MRD+ATI+RL MY+ K R+ +GKII +YQS V SG VARVEPN KWFGNT+VI Q++LQ FQ+EM M +PYKVVMK SKLP+SLL+DR + +VH+LDTESFE TFGPKS RKR N+ A D+ L AE +T++YD+ KD DL+ V ++EA++ + KGQSKRIW ELYKVIDSSDVV+QVLDARDP GTRS HIE ++K EK KHLIF+LNKCDLVPTW T++WVA+LS + PTLAFHAS+TNPFGKGA IQLLRQFGKLH KK ISVGFIGYPNVGKSS+INTL+ KKVC API GETKVWQY+TLMR+I+LIDCPGVVYPS D+ET+IVLKGVV+VE +K P +HI VL R K EYI TYKI WE+AEDF+E+ ++G+LLKGGEPD++T +M+L+D+QRGR+P+FV PP
Sbjct: 21 PDRVQGAGGQNMRDRATIRRLNMYRQ-KERRNSRGKIIKPLQYQSTVASGTVARVEPNIKWFGNTRVIKQSSLQKFQEEMDTVMKDPYKVVMKQSKLPMSLLHDRIRPHNLKVHILDTESFETTFGPKSQRKRPNLFASDMQSLIENAEMSTESYDQGKDRDLVTEDTGV-RNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIETYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSEDSETDIVLKGVVQVEKIKSPEDHIGAVLERAKPEYISKTYKIDSWENAEDFLEKLAFRTGKLLKGGEPDLQTVGKMVLNDWQRGRIPFFVKPP 463 The following BLAST results are available for this feature:
BLAST of TCONS_00055336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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