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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055426 ID=TCONS_00055426|Name=TCONS_00055426|organism=Clytia hemisphaerica|type=transcript|length=1044bp
CAATTCCGGGGTATTGGCCGCTTTATGCTTACACCTATATAAAGAGTGAA
ACTTCAACGTAACAAAACACGGAAAAAAAGAATTCAGTTCAAATTTTCAT
CATAgggaaatcaaaacatttttggaTACAATATTTTACTTCAGCAGGAT
ATATTGTGATGAACACCAAAGTAATTGTATCTTGTATACTTGTCGTTATA
CTGGCAAATTGTCAAGCACATTTCCGTATCGGTAAACGTAGCAAGTTCGT
AAGCCGTCAACGTCAAGCTGCACCACCACATAATGAAATATTGAACTTTC
TTCAAAAAGCTGGAGGCTCACGAAAAATCTGTCAACATCTGCTTAGATCG
TCCAATTTTGGCCTTGAAAAGAACGAAGCCGGCAGTTATGTTATTGACAA
GTTACAAAGTGACGTCCAAGCTTTGAAATCAAGTCATACATCAGCAATCA
CCAAGTATAAAGCTCTATTAGAACTCCTTGAAGAATATTGTCTACAAAAC
GCACTTAACGCAGCCTTGACTTCAAACGAAGACGCCAGTCAGTCAGAAAT
CGAAGATGAAGTATATCGGAAATAAGATTTTTATATAAACCTTGTGGATT
TTTAAGAATAACCCTGTGGATTTTTAAGAATAACCatgtgtaaaaatatt
ttttcatgttaCCTTTATTACGAGATATTCAGATTTTATATCTGTCTCTC
AAATTTAGCTTGGCAATAAAAGTTCAGCCCTGTGAAATAATAACTTTAAA
AACTTTgtataattaaaattttacttagCTTATCGACGAAAATATAATGA
CACAATACCAATCaacaatttccaaatttttcatttaaggttTGAAGAGT
ATGACCAGGCCGGGGATTGAGCAATTGAACCCACAATCTTGCGCACCGGA
ACCGAATATGGGACGTTTTCCCCGTTTCCCAGACAATGTTTAAACTAGCC
CTTTGCGTGCCGTTACCTTgtttttgtaccccaatccatttgccgagggg
taattttttttagtaacctgatttgccgatgtcgtatataccCG Run BLAST on NCBI transcript from alignment at scaffold_253:788842..794238+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055426 ID=TCONS_00055426|Name=TCONS_00055426|organism=Clytia hemisphaerica|type=transcript|length=5397bp|location=Sequence derived from alignment at scaffold_253:788842..794238+ (Clytia hemisphaerica)
CAATTCCGGGGTATTGGCCGCTTTATGCTTACACCTATATAAAGAGTGAA
ACTTCAACGTAACAAAACACGGAAAAAAAGAATTCAGTTCAAATTTTCAT
CATAgggaaatcaaaacatttttggaTACAATATTTTACTTCAGCAGGTA
AgatttataattttgtttggtTCTGGCGAAATTTGTTTGCCCATTTTATT
TCCAAGACCTGTGGATATTTCTGTGAAAAACGTGCACACCACTTTTCACT
ACTTCTCAATAAACATCATCAATACAACACCACAAACTGTTGCCATGACC
AATGGATTCGAGCTGAGAATTGTTTTAGAGGTTTGATGCGCCATGCAGTG
TTAGTCAAATAATCTTCCtttaaaaaatttaccaaattttgataaatttt
tcggaaagaaTTAGACGTAATGCTTAAAGAAAATATCGGATTGTCTGACC
GCGTAACATACCCAGTACCTATGCATAAGAAGTTCAGTttataacaataa
aaaataaatttggctCAAATTACAAACCCTTATCAACTGTAAATACTTAC
GTTTCATAAAACTACCCAAAATCGACGAAAGTTTCACCTGCTTGcaaatc
aaaattttcctataatattttctttttgaattttgttgatGCGGGATAAA
TTTTACTGAGCCAATATCAAATTATTGGTGTTGTTCTaagttgttttaaa
aatttatccGGGGcaattattttcatcaaaatttattacaaGAGATATAG
CTCTAAAAGTTCAAAGACTGAAAACTGGTGAAAAtcgaaaacaaattttc
ttttcattttttttctcagacAAATCATCTAAGACACAAAATAATTCGTG
GATGATATTTACAGCCGAAGTGATTTTCAAAGTTATGAACAAGTCTCAAA
CTCTTACCACTCTTACATTTTCTCGTAATTACTATCCGTTAAACAACTAC
ATTTTCTACTCTCTAAACAGCCGAATCGAACGTCTGGAGTCATCGTCGTA
TATCGTTTGGCTTACTAAATACTTCCTAATCTAGGGTACCATATTCGAAA
AATTGCATTCTTTCCAAATGAAGCTATCCGTTCATAAGctgtaaacataa
atttttctcctttttttctcATAGGATATATTGTGATGAACACCAAAGTA
ATTGTATCTTGTATACTTGTCGTTATACTGGCAAATTGTCAAGCACATTT
CCGTATCGGTAAACGTAGCAAGTTCGTAAGCCGTCAACGTCAAGCTGCAC
CACCACATAATGAAATATTGAACTTTCTTCAAAAAGCTGGAGGCTCACGA
AAAATCTGTCAACATCTGCTTAGATCGTCCAATTCTGGCCTTGAAAAGAA
CGAAGCCGGCAGTTATGTTATTGACAAATTACAAAGTGACGTCCAAGCCT
TGAAATCAAGTCATACATCAGCAATCACCAAGTATAAAGCTCTATTAGAA
CTCCTTGAAGAATATTGTCTACAAAACGCACTTAACGCAGCCTTGACTTC
AAACGAAGACGCCAGTCAGTCAGAAATCGAAGATGAAGTATATCGGAAAT
AAGATTTTTGTATAAACCTTGTGGATTTTTAAAAACAACCctgtgtaaaa
atattttttcatgttaCCTTTATTACGCCTAAGGAGTTATTCAGATTTTA
TATCTCTCTCTCAAATTTAGCTTGGCAATAAAAGTTCAGCCCTGTGAAAT
AATAACTTTAAAAACTTTgtataattaaaattttacttagCTTATCGACG
AAAATATAATGACACAATACCAATCaacaatttccaaatttttcatttaa
ggttTGAAGAGTATGACCAGGCCGGGGATTGAGCAATTGAACCCACAATC
TTGCGCACCGGAAACGAATATGGGACGTTTTCTCCGTTTCCCAGACAATG
TTTAAACTAGAGTAGCAAACTACTCtcttaattaatcatgtcagagggtg
GAAACATATATAAAGGCGACAAACGTTTGCTAGAATATGAGcagcgtagg
agaacgagcaaaagttggcgAGAGGctgctttcagcccttgccgccgaca
aaatttcttcttatACGCTTACCATAACTCCTACGCTCGCTTTTCCCGCA
TGACACCGTTCCATCCCGACAGGCGTACCAGTGTAAAGCTTAAACCCAAA
AATATGacgaaaataacaaaattttataCCGTAACTATTATATcaatcga
aagctctcaaaaaatatGTTGGACTTTTAAGAGGACAGAGACgtcaagaa
acttttttgtgataTTTGACGTACAGAATTGACGTTTTTCTCGTCTTAGA
AGTTGAGGTACAATGCGTTTGAAACTTCACTTTCTGTTTTAATATCTATC
TTAAATGTGCGTGACTTAAGGAGtactaatatattttttgaatcatTCTA
AGTGCAAGCCAAATAGGTAAATTTGTATTTGTTTTGAGTCTACATCTTTT
GGTTGAATCCCGGGGGTACTCGATTACTAAACGACGGTATATGTCGCAAA
AAATTGCTTTCAAAACCagatccttacagtgcagacCTTAAACagtaaaa
aggtacccttacagtgcattttaccgaaagtttctgacccttacaggtag
tttgatttcatatcttattttgctgaagccacctATAAATGAGCCTGGGA
TATCGACACAaagtgcaaaacaaatcaaaatgggtacGAGTCAAAACCAA
AAAGATatatcagatttttactgtcagactttCAACTCAGCAGTCttcaa
acacacccttacagtgtatccaactaaaaagaagacccttgttgtgcact
ctatcaaaagtacacccctCGGGGGTTGAATGTTTAACGACATACTATGA
ATATTACAGTTTATAATTATACACTACTTGTAAGCTACTGTGTATCTTTT
ACTTTTCTGCAATGAGGTATAAAGTGGAATACGAAAAGTAGTATATTCTC
TGTTTACTACAAGTTTGAGATGAATATCCGAATACTTTCGGAATCTCTTT
TGAATTCCCCTTCTGAGATGGGACATTTCGTCGTTGCTGAGACGTTATGT
TGCTAGGATAAAGGGACCGGCCAAGGaacacttgcgcgcgcttcaatcat
acttttcgagcaaagcttccaagCTAtgggtcaaaagaaaaataaagcaa
cTTAATTGGTGCGATCNGTTGCTGACACGTTATGTTGCTAGGATAAAGGG
ACCGGCCAAGGaacacttgcgcgcgcttcaatcgcacttttcgagcaaag
cttccaagCTAtgggtcaaaagaaaaataaagcaacTTAATTggtgcgat
ctgacgtaacagGCGtgcgagcgcgcgctacatttttatgacttaatctt
ttctccaagcaaaaaggcttgaagccaaaaagtgcgatcgcagggCGCGC
ATCGCAGGGCGAGCAAGTAGGGACGGGCTTTAAAAGTCAATGCAATTGTT
TTGAAGTTCAAGAACCAAATGAAATCATTTTCTGACGTTCTGCTAATGAT
GGATCAACCGTATACTAAGTTTTTGACGGCACAATAGAGATTTCTATGGT
TTATATAGGCTACAGTGAGGCTACAGGATTTTCACAATTATGCaaggaag
gggggggggttgccTGTACAAAATCAAACGCTTTCTTCATCAAGAAAGAC
GGAAGATACACAACTTATAACCAAACCTGAAAACACATTGTAGAATCTTT
TCCGATGTCTAAATATTTACCCGAGGGCTGTGCAAAGAACGTAATCTTCT
TATATTATGTAATCCATTGGCAGACTATGTACTCACATCGCAATAGAAAA
AGACTTTTCACCAGGTAGAGTGCTATGGGAACATTGTGATAGACACCACC
AATACCAATAAGGATAACGCTTGGATAGGGTTGGGGTTGCTCGGTGCACA
AAACTAGAGACTTcccgcgcgctacatttttgttttgaattttgttgatG
CGGGATAAATTTTACTGAGCCAATATCAAATTATTGGTGTTGTTGTaagt
tgttttaaaaatttaccCGGGGcaattattttcattaaaatttattACAA
GAAATATAGCTCTAAAAGTTCAAAGACTGAAAACTGGTGAAAAtcgaaaa
caaattttcttttcattttttttctcagacAAATCATCTAAGACACAAAA
TAGTTCGTGGATGAGATTTACAGCCGAAgtgattttcaaagttttgaagt
CTCAAACTCTTACTACCACAACACTTATATTTTGTCGTAATTACTATCCG
TTAAACAACTACATTTTCTACTCTCTAAACTTATACACTTATATTTTGTC
GTAATTACTATCCGTTAAACAACTACATTTTCTACTCTCTAAACAGCCGA
ATCGAACGCCGGGAGTCATCGTCGTATATCGCTGGGCTTACTAAATACTT
CCTAATCTAGGGTACCATATTCGAAAAATCTCATTCTTTCCAAATGAAGC
TATCCGTTCATAAGCtgtaaacataattttttctcctttttttctcATAG
GATATATTGTGATGAACACCAAAGTAATTGTATCTTGTATACTTGTCGTT
ATACTGGCAAATTGTCAAGCACATTTCCGTATCGGTAAACGTAGCAAGTT
CGTAAGCCGTCAACGTCAAGCTGCACCACCACATAATGAAATATTGAACT
TTCTTCAAAAAGCTGGAGGCTCACGAAAAATCTGTCAACATCTGCTTAGA
TCGTCCAATTTTGGCCTTGAAAAGAACGAAGCCGGCAGTTATGTTATTGA
CAAGTTACAAAGTGACGTCCAAGCTTTGAAATCAAGTCATACATCAGCAA
TCACCAAGTATAAAGCTCTATTAGAACTCCTTGAAGAATATTGTCTACAA
AACGCACTTAACGCAGCCTTGACTTCAAACGAAGACGCCAGTCAGTCAGA
AATCGAAGATGAAGTATATCGGAAATAAGATTTTTATATAAACCTTGTGG
ATTTTTAAGAATAACCCTGTGGATTTTTAAGAATAACCatgtgtaaaaat
attttttcatgttaCCTTTATTACGAGATATTCAGATTTTATATCTGTCT
CTCAAATTTAGCTTGGCAATAAAAGTTCAGCCCTGTGAAATAATAACTTT
AAAAACTTTgtataattaaaattttacttagCTTATCGACGAAAATATAA
TGACACAATACCAATCaacaatttccaaatttttcatttaaggttTGAAG
AGTATGACCAGGCCGGGGATTGAGCAATTGAACCCACAATCTTGCGCACC
GGAACCGAATATGGGACGTTTTCCCCGTTTCCCAGACAATGTTTAAACTA
GCCCTTTGCGTGCCGTTACCTTgtttttgtaccccaatccatttgccgag
gggtaattttttttagtaacctgatttgccgatgtcgtatataccCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055426-exon-scaffold_253-1491911889:788842..788988 | TCONS_00055426-exon-scaffold_253-1491911889:788842..788988 | Clytia hemisphaerica | exon |
| TCONS_00055426-exon-scaffold_253-1510915933:788842..788988 | TCONS_00055426-exon-scaffold_253-1510915933:788842..788988 | Clytia hemisphaerica | exon |
| TCONS_00055426-exon-scaffold_253-1575043694:788842..788988 | TCONS_00055426-exon-scaffold_253-1575043694:788842..788988 | Clytia hemisphaerica | exon |
| TCONS_00055426-exon-scaffold_253-1491911889:793342..794238 | TCONS_00055426-exon-scaffold_253-1491911889:793342..794238 | Clytia hemisphaerica | exon |
| TCONS_00055426-exon-scaffold_253-1510915933:793342..794238 | TCONS_00055426-exon-scaffold_253-1510915933:793342..794238 | Clytia hemisphaerica | exon |
| TCONS_00055426-exon-scaffold_253-1575043694:793342..794238 | TCONS_00055426-exon-scaffold_253-1575043694:793342..794238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:788842..794238 + |
Blast
The following BLAST results are available for this feature:
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