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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055427 ID=TCONS_00055427|Name=TCONS_00055427|organism=Clytia hemisphaerica|type=transcript|length=2574bp
ttgataatCTTACTGATGACATAAAGTTATATGGGGACTAACCCCCATCT
GTAAAGTTACTTTCATTCCATTtagaaaaaaacattgaaaatccGAGGAC
AAAAGAGAAAATTCCTCCTTTATTCCAAATTTCTCATGTGGAACACACAT
AACAACCTTTTCTAAAACCATTTCCTACTCAAATCACCAACCGAACACAT
GAAAATATCAATCCACAACAACTCTCAACAACAGCTTAGAGATTGGAAAG
ATGTGGTGCTTCGTTTCAGAGCCCAATGGGACAATCCACGAGCTTATACT
ACCTAAGGGAAGCTATGGGATTGATTGTCTTGATAtgATCTCGTCAAGAA
TTAACCTTGTCGAAAAGGATTACTTTGGCTTGAAGTATACCAACCCATCA
ACTGGTGTCAATACATGGCTTAATCTCAGGAATAAACTATCACAACAGCT
CACTGGGAGGGCTCCACATCGAATACAACTCACAGTGAAATATTTTGTTA
ATGTTCAAGAGCTTCAACAACAAATTTCAAgGGACATTTTTTATTCTACA
ATCTACCAACAACTCTTAAATGAAGATTTATTGGACAAAATTGGTCAACC
TGAACTAAACAAAGTAATAGCTCTCATTGCACAAGTGAAATATGGAGATT
TCAATGCAGAATCAGTGCCAGAATACTCAAAACTGTTACCCTCAATCAAA
TGGTCTAATGAATTACAAAAAAGCGTTGAAACTGAACATCTCAACCTTGA
TATGGTGACCTCATCTGAAGCTAAAATccaattcatcaaaatttttgggg
ACCTTCCTAACTATGGAATGGATATTTTCCATGTGAATTCAGTAGCAGAA
CATCCAGATCAACTTATTCTTGGTGTTCGTCATGATGGCCTCAGAATCTA
CAAAGATAAATCAATTCTATCAGAAACTGAGCAAGAGAATTTAGTCCAAT
TCATTCCTTATGATGAAATTTCAACTGTATCATATAAAGGCAAGAAGTTC
ACTATTGTGCATGGAAGTAACCAAGACGATCATGTTCATTCCACTTTTCT
TTTGCGAGAGAGGCAGATTATACCTTTTTGATGTTGTTCGAACAAGACGT
CAAGCATACGATCATGCCTGGTCAATATTGAATGCCCCTGATAAGAAACG
TCAATCAGCATTTTATCACAGTGACCGTCATATCAATCGAAAAAGTGTAT
ATAGTTTGAGTAAAGTTGACGAGGCTCCAGAGACTCACAGTAGAAGACCT
CAGTCTCAAAGCTTTGAATCTATAACTTTCACGAAAGACCACAAAAAGAA
AGAAGGTAGGCTGATTTCTGCAGATGCTAACGTTAAACAATTGTCTTTGG
AGGAATTACGTGAAACTGTTGAAAATCTGTTGGAGAACAAAGTATGCCAA
GTTTGCATGGATTCTGAAGTCTCCACTGCGTTTTGTCCTTGTGGCCATGT
TGTATGTTGTGTGGATTGTGCAACTTTGTGTCGTGAATGTCCTCTATGTC
GGATGCAAATCACTTATGCCCAAagagttttcttttcaaatgatTGAAAG
CTACAGAAATTTATTGTGTTCATTCTTATTGTTAttgtctttataaaaaa
aaaactaattctaGAAGCTTGTTGTAAATATGAAGTAGTGTAAATTTATT
ATTTGTAAagtgttaaaatttttaataaaaatcctTAGTAGGGTATCCAG
GTTTTAGCTGGGACCAATTTATTAAGATTCATTTTTAGTAAATATCGTGT
TTTTTTAGTAATTTAACTGAAAgtagacagacagacagacagaaagACAG
AGATAgagatgaaatttatttttcaaatttcatcagCTTTTTTTAGCTAA
TGAATTATGTATGTGTATATTGAAAATGTTGGTCTATTTGATCGTAAATT
TCAGGATTGGATTCTTGAATGTTCTGTCAGTGTCGTCTTTGAAACttaat
gaaagatttatgaGCTTCAACACatgtagatttttttctctttttttccg
aTTCAGCTGAATTCAGTCGATACGAATTTATTTCTCAATTTGAGAAATAT
AGCTGACTctcataaaaatttataaaatgacGTATTTCGGgcgttgtttt
tcattttcaaagtagaTTTTGTTGGGTTTTTTATACTTAGATTctgaaat
ttcccttttttcaaaatcaccCTTCTATTTCTAGTGGCctctttatcttt
ttttatggTCACTTAAgttcatagccctttttttgCAACagtagaaataa
ttttttcattttctcttattttgaaaatttgtttttcccataaaattGTA
CTTAGATAAATATTATTTCATACTTTTGCTTTTTTCCTCATTGTTACTCT
CAAGTGCCTTAAAAGCTCCGGTTTTGCGATATTTATTAACTCATCTGATT
GGAGAAACTTTCACCTGTCAAAAGTGCATTTAAATAATTTGACTTCCTTC
TTAGAATTTTGTTCTATCAAGGGAAAAAATACAGGGTATTGATGAAAGAC
ACTTGAGAGAATTCTTTTTCCTGCGTttcaaaatatcatattttcaaaaa
ccgAAAAATAAAATCGAAACATTA Run BLAST on NCBI transcript from alignment at scaffold_253:805425..810251+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055427 ID=TCONS_00055427|Name=TCONS_00055427|organism=Clytia hemisphaerica|type=transcript|length=4827bp|location=Sequence derived from alignment at scaffold_253:805425..810251+ (Clytia hemisphaerica)
ttgataatCTTACTGATGACATAAAGTTATATGGGGACTAACCCCCATCT
GTAAAGTTACTTTCATTCCATTtagaaaaaaacattgaaaatccGAGGAC
AAAAGAGAAAATTCCTCCTTTATTCCAAATTTCTCATGTGGAACACACAT
AACAACCTTTTCTAAAACCATTTCCTACTCAAATCACCAACCGAACACAT
GAAAATATCAATCCACAACAACTCTCAACAACAGCTTAGAGATTGGAAAG
ATGTGGTGCTTCGTTTCAGAGCCCAATGGGACAATCCACGAGCTTATACT
ACCTAAGGGAAGCTATGGGATTGATTGTCTTGATAtggtaagaaatattt
tttcatagttTGTTGTTGTTATAACTTTATGATTCTGACCTTCTAATATT
TTTGTTTGTGTTGTGTCTTGCTGTGAAAATCTCATAAGCAATGCATCTAA
TTTCTTTTTATCAGATCTCGTCAAGAATTAACCTTGTCGAAAAGGATTAC
TTTGGCTTGAAGTATACCAACCCATCAACTGGTGTCAATACATGGCTTAA
TCTCAGGAATAAACTATCACAACAGCTCACTGGGAGGGCTCCACATCGAA
TACAACTCACAGTGAAATATTTTGTTAATGTTCAAGAGCTTCAACAACAA
ATTTCAAggtatttttcttgaaaattagaATTGGGAGTCCTATATCCCTT
TTCTTGTGAGTGTTAGAATTGAAGTGTTGCTTTTGTGTTGACTTTTTGTG
CCTGATCTGATTCgatattttttcttaaataaattCCTGCTTTAAAAGAG
CGGTTGTTGTTTGACAAGACTATTAAAACCATTTGTGACAATACATAcct
taagttggtctaatatcgacatccctcttctaatttcaacatccttcttt
agagataggaacaataggaaggtcagaatcactgatggactcctcaactg
attgcttagcaaaaaaaaataagtttcagcgattccaaccttcctatcat
tcatatctttaaagaaggatgTNATTAACTTTTAGatacatttttgtatt
ttgataatCTTACTGATGACATAAAGTTATATGGCGACTAACCCCCATCT
GTAAAGTTACTTTCATTCCATTtagaaaaaaacattgaaaatccGAGGAC
AAAAGAGAAAATTCCTCCTTTATTCCAAATTTCTCATGTGGAACACACAT
AACAACCTTTTCTAAAACCATTTCCTACTCAAATCACCAACCGAACACAT
GAAAATATCAATCCACAACAACTCTCAACAACAGCTTAGAGATTGGAAAG
ATGTGGTGCTTCGTTTCAGAGCCCAATGGGACAATCCACGAGCTTATACT
ACCTAAGGGAAGCTATGGGATTGATTGTCTTGATAtggtaagaaatattt
tttcatagttTGTTGTTGTTATAACTTTATGATTCTGACCTTCTAATATT
TTTGTTTGTGTTGTGTCTTGCTGTGAAAATCTCATAAGCAATGCATCTAA
TTTCTTTTTATCAGATCTCGTCAAGAATTAACCTTGTCGAAAAGGATTAC
TTTGGCTTGAAGTATACCAACCCATCAACTGGTGTCAATACATGGCTTAA
TCTCAGGAATAAACTATCACAACAGCTCACTGGGAGGGCTCCACATCGAA
TACAACTCACAGTGAAATATTTTGTTAATGTTCAAGAGCTTCAACAACAA
ATTTCAAggtatttttcttgaaaattagaATTGGTAGTCCTATATCCCTT
TTCTTGTGAGTGTTAGAATTGAAGTGTTGCTTTTGTGTTGACTTTTTGTG
CCTGATCTGATTCgatattttttcttaaataaattCCTGCTTTAAAAGAG
CGGTTGTTGTTTGACAAGACTATTAAAACCATTTGTGACAATACATAcct
taagttggtctaatatcgacatccctcttctaatttcaacatccttcttt
agagataggaacaataggaaggtcagaatcactgatggactcctcaactg
attgcttagcaaaaaaaaataagtttcagcgattccaaccttcctatcat
tcatatctttaaagaaggatgtcgaaattagaaaatggatgtcgacatta
gaccaacttacggtacaaaACTAGTCATTtctattttccttttcaaaaat
catcaaaccaGAAAACTGGGAATTCTTATtcaaacctgaacataataaca
AAAGAATTCCGAACTGATGTAATCTTAATCTTATTTTTCAGGGACATTTT
TTATTCTACAATCTACCAACAACTCTTAAATGAAGATTTATTGGACAAAA
TTGGTCAACCTGAACTAAACAAAGTAATAGCTCTCATTGCACAAGTGAAA
TATGGAGATTTCAATGCAGAATCAGTGCCAGAATACTCAAAACTGTTACC
CTCAATCAAATGGTCTAATGAATTACAAAAAAGCGTTGAAACTGAACATC
TCAACCTTGATATGGTGACCTCATCTGAAGCTAAAATccaattcatcaaa
atttttggggACCTTCCTAACTATGGAATGGATATTTTCCATGTGAATTC
AGTAGCAGAACATCCAGATCAACTTATTCTTGGTGTTCGTCATGATGGCC
TCAGAATCTACAAAGATAAATCAATTCTATCAGAAACTGAGCAAGAGAAT
TTAGTCCAATTGTAagtattttaaattaaaaacttGAATAGTTAATTTTG
ACATTTAAACgtcttttaaaattcaaaattatgaATCGCCTTTTGGTGCC
TTGAACTCAGGGAACTCAGGGAActcatttttgtcatttttactTTGACT
ACACCAGAAAAATTAGAACCTGTGAATTACAAATTtggttgtttttcttc
aaaaaacctgaaaaatccttcttaggaaaatgaaagaaatgtgtcAAACA
GTGTCAAATAGTGCAAAACTGCGGAAATTAATTTCCACCAAATGCGAacg
tttggaattttttttgaccaagaaaattagttcccttttaGGTACATGAC
AAATTTTACAAGGTTCTCAGAAGAATTTTTCGAATAATTAGTTTTATTTT
CTTACTTTCAGCATTCCTTATGATGAAATTTCAACTGTATCATATAAAGG
CAAGAAGTTCACTATTGTGCATGGAAGTAACCAAGACGATCATGTTCATT
CCACTTTTCTTTTGCGTAAGAATCAACAAGCAATCAATCTTTTCAGGACA
TTTACAGAGTTTCATTCATTCTATCAATGCAACAGTGTTAAAAAATCGGT
AATTGAGAAATGTTCCAGGACCTCAGTAGCAAGAATCCTTTCGGTCTTTT
CACGTCAGGAGAGAGGCAGATTATACCTTTTTGATGTTGTTCGAACAAGA
CGTCAAGCATACGATCATGCCTGGTCAATATTGAATGCCCCTGATAAGAA
ACGTCAATCAGCATTTTATCACAGTGACCGTCATATCAATCGAAAAAGTG
TATATAGTTTGAGTAAAGTTGACGAGGCTCCAGAGACTCACAGTAGAAGA
CCTCAGTCTCAAAGCTTTGAATCTATAACTTTCACGAAAGACCACAAAAA
GAAAGAAGGTAGGCTGATTTCTGCAGATGCTAACGTTAAACAATTGTCTT
TGGAGGAATTACGTGAAACTGTTGAAAATCTGTTGGAGAACAAAGTATGC
CAAGTTTGCATGGATTCTGAAGTCTCCACTGCGTTTTGTCCTTGTGGCCA
TGTTGTATGTTGTGTGGATTGTGCAACTTTGTGTCGTGAATGTCCTCTAT
GTCGGATGCAAATCACTTATGCCCAAagagttttcttttcaaatgatTGA
AAGCTACAGAAATTTATTGTGTTCATTCTTATTGTTAttgtctttataaa
aaaaaaactaattctaGAAGCTTGTTGTAAATATGAAGTAGTGTAAATTT
ATTATTTGTAAagtgttaaaatttttaataaaaatcctTAGTAGGGTATC
CAGGTTTTAGCTGGGACCAATTTATTAAGATTCATTTTTAGTAAATATCG
TGTTTTTTTAGTAATTTAACTGAAAgtagacagacagacagacagaaagA
CAGAGATAgagatgaaatttatttttcaaatttcatcagCTTTTTTTAGC
TAATGAATTATGTATGTGTATATTGAAAATGTTGGTCTATTTGATCGTAA
ATTTCAGGATTGGATTCTTGAATGTTCTGTCAGTGTCGTCTTTGAAACtt
aatgaaagatttatgaGCTTCAACACatgtagatttttttctcttttttt
ccgaTTCAGCTGAATTCAGTCGATACGAATTTATTTCTCAATTTGAGAAA
TATAGCTGACTctcataaaaatttataaaatgacGTATTTCGGgcgttgt
ttttcattttcaaagtagaTTTTGTTGGGTTTTTTATACTTAGATTctga
aatttcccttttttcaaaatcaccCTTCTATTTCTAGTGGCctctttatc
tttttttatggTCACTTAAgttcatagccctttttttgCAACagtagaaa
taattttttcattttctcttattttgaaaatttgtttttcccataaaatt
GTACTTAGATAAATATTATTTCATACTTTTGCTTTTTTCCTCATTGTTAC
TCTCAAGTGCCTTAAAAGCTCCGGTTTTGCGATATTTATTAACTCATCTG
ATTGGAGAAACTTTCACCTGTCAAAAGTGCATTTAAATAATTTGACTTCC
TTCTTAGAATTTTGTTCTATCAAGGGAAAAAATACAGGGTATTGATGAAA
GACACTTGAGAGAATTCTTTTTCCTGCGTttcaaaatatcatattttcaa
aaaccgAAAAATAAAATCGAAACATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055427-exon-scaffold_253-1491911889:805425..805761 | TCONS_00055427-exon-scaffold_253-1491911889:805425..805761 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1510915933:805425..805761 | TCONS_00055427-exon-scaffold_253-1510915933:805425..805761 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1575043694:805425..805761 | TCONS_00055427-exon-scaffold_253-1575043694:805425..805761 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1491911889:805889..806082 | TCONS_00055427-exon-scaffold_253-1491911889:805889..806082 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1510915933:805889..806082 | TCONS_00055427-exon-scaffold_253-1510915933:805889..806082 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1575043694:805889..806082 | TCONS_00055427-exon-scaffold_253-1575043694:805889..806082 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1491911889:807666..808085 | TCONS_00055427-exon-scaffold_253-1491911889:807666..808085 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1510915933:807666..808085 | TCONS_00055427-exon-scaffold_253-1510915933:807666..808085 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1575043694:807666..808085 | TCONS_00055427-exon-scaffold_253-1575043694:807666..808085 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1491911889:808486..808589 | TCONS_00055427-exon-scaffold_253-1491911889:808486..808589 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1510915933:808486..808589 | TCONS_00055427-exon-scaffold_253-1510915933:808486..808589 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1575043694:808486..808589 | TCONS_00055427-exon-scaffold_253-1575043694:808486..808589 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1491911889:808733..810251 | TCONS_00055427-exon-scaffold_253-1491911889:808733..810251 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1510915933:808733..810251 | TCONS_00055427-exon-scaffold_253-1510915933:808733..810251 | Clytia hemisphaerica | exon |
| TCONS_00055427-exon-scaffold_253-1575043694:808733..810251 | TCONS_00055427-exon-scaffold_253-1575043694:808733..810251 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:805425..810251 + |
Blast
BLAST of TCONS_00055427 vs. Swiss-Prot (Human)
Match: MYLIP (E3 ubiquitin-protein ligase MYLIP OS=Homo sapiens GN=MYLIP PE=1 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 9.092e-33 Identity = 76/220 (34.55%), Postives = 128/220 (58.18%), Query Frame = 2
Query: 251 MWCFVSEPNGTIHELILPKGSYGIDCLDMISSRINLVEKDYFGLKYTNPSTGVNTWLNLRNKLSQQLTGRAPHRIQLTVKYFVNVQELQQQISRDIFYSTIYQQLLNEDLLDKIGQP-ELNKVIALIAQVKYGDFNAESVPEYSKLLPSIKWSNELQKSVETEHLNLDMVTSSEAKIQFIKIFGDLPNYGMDIFHVNSVAEHPDQLILGVRHDGLRIYKD 907
M C+V+ P+ + E+ + + G DCL+ + R+ ++E DYFGL++T S G + WLNLRN++SQQ+ G AP+R++L VK+FV + Q+ +R IF+ I + LL LL Q EL+ AL+AQ K+GD+N + + L + + S+ S+ +H L+ + + A+ Q ++I + NYG++ V +L++GV +G+ I KD
Sbjct: 1 MLCYVTRPDAVLMEVEVEAKANGEDCLNQVCRRLGIIEVDYFGLQFTG-SKGESLWLNLRNRISQQMDGLAPYRLKLRVKFFVEPHLILQEQTRHIFFLHIKEALLAGHLLCSPEQAVELS---ALLAQTKFGDYNQNTAKYNYEELCAKELSSATLNSIVAKHKELEGTSQASAEYQVLQIVSAMENYGIEWHSVRD--SEGQKLLIGVGPEGISICKD 214
The following BLAST results are available for this feature:
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