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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055437 ID=TCONS_00055437|Name=TCONS_00055437|organism=Clytia hemisphaerica|type=transcript|length=1642bp
AAACAGACGTAGAGAGACTGTATTTTTACATGCGAGCAAAAAGATGGGAT
GGAAAACCAAAACATTCATTTTTCTGTTACCCATCATCGGATATTTTACG
TATAAACATCTCACTGATAATTTCTTATCGCATGTTATAACGATCAGTAA
CATATACCCAAATCTTCCaatcgaaaatttcgcaaaattaaatcctgaTA
TTGGAAATTTCGCAACGCCAGATAATAAGATCTTGCCAAGATATGACTTT
GTAGTGATCGGTGCTGGATCGGCTGGAGCTGTCGTTGCCAGGCGTTTGAG
TGAAAACAAATCATGGAAGATTCTCTTACTAGAGGCTGGTGGTGGCGCCA
ATATCTTGACCGAGATTCCGGGtcttctcttcaacaatttcatgTCACTT
AATGACTGGTCATATAGAACTGAAGCAGCCAAAGATGGAAAAACATCAAG
TATACATACTAAAGGTCAAGTGATTTGGCCCAGAGGTAAAATACTTGGAG
GAAGCAGCTCAATAAACGGGTTAGTCTATGCTAGAGGTAATAAGCTAGAT
TATAACCTATGGTCTGATCAAGGGAACCCAGGATGGAGCTATAAAGATGT
GTTGCCATACTACTTAAAATCTGAAGACCAACGAATCAAAAACCTAGCCA
AGGATACAGGACATCATTCTACAGGTGGTCGTCTGACAATCGAGGATGTT
GACCGAAAAGGAATTTTTCACAAACTTATGGAAGGTTGTAAGAAGGTGTT
ACCAGAAAACCATGACTACAACGGTGGCACACAGACTGGATGTGTTTATT
ACCAAAACACAAAGACAAATGGACAACGATGTAGCACGGCTAACGCGTTT
TTGAAGAATCCGCCATCAAATTTACACATAAGCCCCCTGTCACACGTTCT
ACAAATATCAATTCATGAAGATACACATCAAGCTACAGGTGTGGTGTATA
AAAAGAATGGTAAAGTGGTAATAGTCAATGCTAGGAAAGAAGTCATCCTG
TCTGCTGGTGCTATTGCATCTCCACAGATTTTGATGCTATCAGGTGTAGG
ACCCAAAGAGGAGCTTGAAAAACATGGTATACCACTCATCAAAGACCTTC
CCGTTGGACAAAACTTGCAAGACCATGTGAACGTTGCACATCACATGACG
TTCAATGAATCCATCGAAACTTTGCCAGAACATTTTCAGACATTTGAAAC
TTACAAAGAATATCACCAACATCGAACCGGTCTTCTCTCATCTGGCATCG
TTCTCGGTGCATTCATGCCAGCATctgaaaaagcaaagaaaaatgatTGG
CCTGAAATTCAAACACATTTTTATCCACACTTGATAACATCACTCCCTGT
ATATCAACAAATTTTCAACTTCAATGAAGAGTACTGGAGAAATGTTATGC
TGAAGGAATTGGAAGGGAAGAATGGTGTCACTTTTGTCAACTGTCTTCTA
CGGCCAAAGAGCAGAGGGCACATAAAATTGAGAAGTGCGAAGGCTGACGA
CCATCCGATCATCAccacaaattattttgagcatcCCGACGATCTTACGA
CCTTCGTTGAGGCTTTCAAGTTCGGGAAGAAACTGGCAGCGGCACTGCCT
CAATATAATGCTACACTCGTTGATTTGAATGATCCAGCTTGC Run BLAST on NCBI transcript from alignment at scaffold_253:975020..978409+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055437 ID=TCONS_00055437|Name=TCONS_00055437|organism=Clytia hemisphaerica|type=transcript|length=3390bp|location=Sequence derived from alignment at scaffold_253:975020..978409+ (Clytia hemisphaerica)
AAACAGACGTAGAGAGACTGTATTTTTACATGCGAGCAAAAAGATGGGAT
GGAAAACCAAAACATTCATTTTTCTGTTACCCATCATCGGATATTTTACG
TATAAACATCTCACTGATAATTTCTTATCGCATGTTATAACGATCAGTAA
CATATACCCAAATCTTCCaatcgaaaatttcgcaaaattaaatcctgaTA
TTGGAAATTTCGCAACGCCAGATAATAAGATCTTGCCAAGATATGACTTT
GTAGTGATCGGTGCTGGATCGGCTGGAGCTGTCGTTGCCAGGCGTTTGAG
TGAAAACAAATCATGGAAGATTCTCTTACTAGAGGCTGGTGGTGGCGCCA
ATATCTTGACCGAGATTCCGGGtcttctcttcaacaatttcatgTCACTT
AATGACTGGTCATATAGAACTGAAGCAGCCAAAGATGGAAAAACATCAAG
TATACATACTAAAGGTCAAGTGATTTGGCCCAGAGGTAAAATACTTGGAG
GAAGCAGCTCAATAAACGGGTTAGTCTATGCTAGAGGTAATAAGCTAGAT
TATAACCTATGGTCTGATCAAGGGAACCCAGGATGGAGCTATAAAGATGT
GTTGCCATACTACTTAAAATCTGAAGACCAACGAATCAAAAACCTAGCCA
AGGATACAGGACATCATTCTACAGGTGGTCGTCTGACAATCGAGGATGTT
GACCGAAAAGGAATTTTTCACAAACTTATGGAAGGTTGTAAGAAGGTGTT
ACCAGAAAACCATGACTACAACGGTGGCACACAGACTGGATGTGTTTATT
ACCAAAACACAAAGACAAATGGACAACGATGTAGCACGGCTAACGCGTTT
TTGAAGAATCCGCCATCAAATTTACACATAAGCCCCCTGTCACACGTTCT
ACAAATATCAATTCATGAAGATACACATCAAGCTACAGGTGTGGTGTATA
AAAAGAATGGTAAAGTGGTAATAGTCAATGCTAGGAAAGAAGTCATCCTG
TCTGCTGGTGCTATTGCATCTCCACAGGTACGATATTAtgttttcaagca
ttttcaagcaaaaaaaaaggttttagtAGTTTTAATTAGTAAACCATTCT
TTTATTTCCTGGAATGTTTTAGAATAGTTTATAGCCCCTCCCCTGGGAAA
ATTACATTAAGTTCTAGGAGGttccaaaagaaaaaagcaaaagcCTTTCC
TTAAAACCACTggaatttttcttgaaataccCCCTTTGTGAATATATCAT
GGAATTGCCCAATAAATGAATAATAGTCTCGAATTTGAGTCAAACATGGA
CAAACACAAAGAACACCCTGTCTCAAAGGCCCTAAGGAACATTTTCcccc
agtggggatgaaaatttctatcgaaaacCCAAGATGGTTTTGGAGGGCAA
TTTATGCCATTGATTTTCAAATGGGGATACAaataaagtcaatttcccag
tggggctgaaattatgtgttttttttccaaccagGAACAAAAGTTGGGCC
AAATTTTCAAGTGGGGCGGAGGTCCCAGCGgttctgtgacacagggatgt
cAAAGATTtccaacctttaaaaaaaataaaattttattcttttttagtGT
GTAAGGAACAGAAAACATACAAAGACGTGATACAAACTTGAGACTGATTT
ATATTATCCAAAATCTTAACTTTAGATTTTGATGCTATCAGGTGTAGGAC
CCAAAGAGGAGCTTGAAAAACATGGTATACCACTCATCAAAGACCTTCCC
GTTGGACAAAACTTGCAAGACCATGTGAACGTTGCACATCACATGACGTT
CAATGAATCCATCGAAACTTTGCCAGAACAGTAAGTCaataaattatatt
ttattaatgTTAATCGTCCATCCAAGTAAGCAAACGTATTTAATATTCCC
GCTAATATTTCTCgataaaagaaatactactttccTATTTTCCAGTAATG
GAAAGCATCGGTGGAATTCAATTTAGTCCTTTGAAACTTCATCTCTAACA
AGGTTTCTCATCATCATTCTNGGTTTTGGAGGACAATTTATGCCATTGAT
TTTCAAATGGGAAtacaaaatgaaatgaaaatttcccaGTGGGCCTGAAA
TTGTGTGGTTTTTTCCCACCAGGAACAAAAGtttggccaaattttcaagT
GGGGCAGAGGGATGTCAAAGATTTCCaacctttaaaaaaacttattcttt
tttAGTGTGTACAGGAACAGAAAACATACAAAGACGTGATACAAACTTGA
GACTGATTTATATTATCCAAAATCTTGACTTTAGATTTTGATGCTATCAG
GTGTAGGACCCAAAGAGGAGCTTGAAAAACATGGTATACCACTCATCAAA
GACCTCCCCGTTGGACAAAACTTGCAAGACCATGTGAACGTTGCACACCA
CATGACGTTCAATGAATCCATCGAAACTTTGCCAGAACAGTAAGTCAATG
TTAATCATCCACCCAAGTAAGCAAACGTATTTAACATTCCCGCTAATATT
TCTCgataaaagaaatactactttcgGTGAATCGGTGGAATTCAATTTAG
TCCTTTGAAACTTCATCTCTAACAAGGTTTTTCATTATCATTCTAAAGAC
AAATTCCATTCACAGTTTTCAGACATTTGAAACTTACAAAGAATATCACC
AACATCGAACCGGTCTTCTCTCATCTGGCATCGTTCTCGGTGCATTCATG
CCAGCATctgaaaaagcaaagaaaaatgatTGGCCTGAAATTCAAACACA
TTTTTATCCACACTTGATAACATCACTCCCTGTATATCAACAAATTTTCA
ACTTCAATGAAGAGTACTGGAGAAATGTTATGCTGAAGGAATTGGAAGGG
AAGAATGGTGTCACTTTTGTCAACTGTCTTCTACGGCCAAAGAGCAGGTT
TGGATGGTTGTTATTTATGAAAAGTTAAAgctttgtttggttgatgtatA
AAAacacagttgacactctctaattcgattttcaagggggggTTGAAAAG
GGAGCGTATCAAACACTAACGCGTTGTTTATGAGTGTTTCTTGCTGACGG
TGACTtttaatattatcgaataatgaagCGTATCGAAAATTAGAATTTCG
GATTAGAGAGTTGAAAAACAGGTTGTTAGGGTAAGTGCCCCATATTGCCT
GGACTAAAAGGATTCCAAATAACTGATTGAAAGGTCTCAACCGTTGACTA
TCTATCTTTCAGAGGGCACATAAAATTGAGAAGTGCGAAGGCTGACGACC
ATCCGATCATCAccacaaattattttgagcatcCCGACGATCTTACGACC
TTCGTTGAGGCTTTCAAGTTCGGGAAGAAACTGGCAGCGGCACTGCCTCA
ATATAATGCTACACTCGTTGATTTGAATGATCCAGCTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055437-exon-scaffold_253-1491911889:975020..976046 | TCONS_00055437-exon-scaffold_253-1491911889:975020..976046 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1510915933:975020..976046 | TCONS_00055437-exon-scaffold_253-1510915933:975020..976046 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1575043694:975020..976046 | TCONS_00055437-exon-scaffold_253-1575043694:975020..976046 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1491911889:976695..976849 | TCONS_00055437-exon-scaffold_253-1491911889:976695..976849 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1510915933:976695..976849 | TCONS_00055437-exon-scaffold_253-1510915933:976695..976849 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1575043694:976695..976849 | TCONS_00055437-exon-scaffold_253-1575043694:976695..976849 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1491911889:977635..977916 | TCONS_00055437-exon-scaffold_253-1491911889:977635..977916 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1510915933:977635..977916 | TCONS_00055437-exon-scaffold_253-1510915933:977635..977916 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1575043694:977635..977916 | TCONS_00055437-exon-scaffold_253-1575043694:977635..977916 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1491911889:978232..978409 | TCONS_00055437-exon-scaffold_253-1491911889:978232..978409 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1510915933:978232..978409 | TCONS_00055437-exon-scaffold_253-1510915933:978232..978409 | Clytia hemisphaerica | exon |
| TCONS_00055437-exon-scaffold_253-1575043694:978232..978409 | TCONS_00055437-exon-scaffold_253-1575043694:978232..978409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:975020..978409 + |
Blast
BLAST of TCONS_00055437 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2) HSP 1 Score: 174.481 bits (441), Expect = 6.085e-47 Identity = 141/448 (31.47%), Postives = 204/448 (45.54%), Query Frame = 2
Query: 293 RLSENKSWKILLLEAG-----GGANILT---EIPGLLFNNFMSLN-DWSYRTEAAK--DGKTSSIHTKGQVIWPRGKILGGSSSINGLVYARGNKLDYNLWSDQGNPGWSYKDVLPYYLKSEDQRIKNLAKDTGHHSTGGRLTIED----VDRKGIFHKL----MEGCKKV-LPENHDYNGGTQTGCVYYQNTKTNGQRCSTANAFLKNPPSNLHISPLSHVLQISIHEDTHQATGVVYKKNGKVVIVNARKEVILSAGAIASPQILMLSGVGPKEELEKHGIPLIKDLP-VGQNLQDHVN--VAHHMTFNESIETLPEHFQTFETYKEYHQHRTGLLSSG-IVLGAFMPASEKAKKNDWPEIQTHFYPHLITS---LPVYQQIFNFNEEYWRNVMLKELEGKNGVTFVNCLLRPKSRGHIKLRSAKADDHPIITTNYFEHPDDLTTF 1555
RL+E+ + ++LLLEAG G+ L+ +P L N +W Y TE + DG+ + WPRG++ GGSSS+N +VY RG+ DY W QG GW Y LPY+ K++ GH R D V R H L +E ++ P D NG Q G + T G+R S A A+L S ++ + L + + +A GV Y KNG+ A KEVILS GAI SPQ+LMLSG+G ++L+K GIP++ LP VGQNLQDH+ + T ++ + + + E+ TG ++ + G F+ + P+IQ HF P + +P Q+ + + +R S G +KLRSA DHP+I NY D+ F
Sbjct: 58 RLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRV--------LYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQ-----------GHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPH---PDIQFHFLPSQVIDHGRVPTQQEAYQVHVGP---------------------MRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDF 462
The following BLAST results are available for this feature:
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