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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055439 ID=TCONS_00055439|Name=TCONS_00055439|organism=Clytia hemisphaerica|type=transcript|length=1635bp
CGTAGAGAGACTGTATTTTTACATGCGAGCAAAAAGATGGGATGGAAAAC
CAAAACATTCATTTTTCTGTTACCCATCATCGGATATTTTACGTATAAAC
ATCTCACTGATAATTTCTTATCGCATGTTATAACGATCAGTAACATATAC
CCAAATCTTCCaatcgaaaatttcgcaaaattaaatcctgaTATTGGAAA
TTTCGCAACGCCAGATAATAAGATCTTGCCAAGATATGACTTTGTAGTGA
TCGGTGCTGGATCGGCTGGAGCTGTCGTTGCCAGGCGTTTGAGTGAAAAC
AAATCATGGAAGATTCTCTTACTAGAGGCTGGTGGTGGCGCCAATATCTT
GACCGAGATTCCGGGtcttctcttcaacaatttcatgTCACTTAATGACT
GGTCATATAGAACTGAAGCAGCCAAAGATGGAAAAACATCAAGTATACAT
ACTAAAGGTCAAGTGATTTGGCCCAGAGGTAAAATACTTGGAGGAAGCAG
CTCAATAAACGGGTTAGTCTATGCTAGAGGTAATAAGCTAGATTATAACC
TATGGTCTGATCAAGGGAACCCAGGATGGAGCTATAAAGATGTGTTGCCA
TACTACTTAAAATCTGAAGACCAACGAATCAAAAACCTAGCCAAGGATAC
AGGACATCATTCTACAGGTGGTCGTCTGACAATCGAGGATGTTGACCGAA
AAGGAATTTTTCACAAACTTATGGAAGGTTGTAAGAAGGTGTTACCAGAA
AACCATGACTACAACGGTGGCACACAGACTGGATGTGTTTATTACCAAAA
CACAAAGACAAATGGACAACGATGTAGCACGGCTAACGCGTTTTTGAAGA
ATCCGCCATCAAATTTACACATAAGCCCCCTGTCACACGTTCTACAAATA
TCAATTCATGAAGATACACATCAAGCTACAGGTGTGGTGTATAAAAAGAA
TGGTAAAGTGGTAATAGTCAATGCTAGGAAAGAAGTCATCCTGTCTGCTG
GTGCTATTGCATCTCCACAGATTTTGATGCTATCAGGTGTAGGACCCAAA
GAGGAGCTTGAAAAACATGGTATACCACTCATCAAAGACCTCCCCGTTGG
ACAAAACTTGCAAGACCATGTGAACGTTGCACACCACATGACGTTCAATG
AATCCATCGAAACTTTGCCAGAACATTTTCAGACATTTGAAACTTACAAA
GAATATCACCAACATCGAACCGGTCTTCTCTCATCTGGCATCGTTCTCGG
TGCATTCATGCCAGCATctgaaaaagcaaagaaaaatgatTGGCCTGAAA
TTCAAACACATTTTTATCCACACTTGATAACATCACTCCCTGTATATCAA
CAAATTTTCAACTTCAATGAAGAGTACTGGAGAAATGTTATGCTGAAGGA
ATTGGAAGGGAAGAATGGTGTCACTTTTGTCAACTGTCTTCTACGGCCAA
AGAGCAGAGGGCACATAAAATTGAGAAGTGCGAAGGCTGACGACCATCCG
ATCATCAccacaaattattttgagcatcCCGACGATCTTACGACCTTCGT
TGAGGCTTTCAAGTTCGGGAAGAAACTGGCAGCGGCACTGCCTCAATATA
ATGCTACACTCGTTGATTTGAATGATCCAGCTTGC Run BLAST on NCBI transcript from alignment at scaffold_253:975027..978409+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055439 ID=TCONS_00055439|Name=TCONS_00055439|organism=Clytia hemisphaerica|type=transcript|length=3383bp|location=Sequence derived from alignment at scaffold_253:975027..978409+ (Clytia hemisphaerica)
CGTAGAGAGACTGTATTTTTACATGCGAGCAAAAAGATGGGATGGAAAAC
CAAAACATTCATTTTTCTGTTACCCATCATCGGATATTTTACGTATAAAC
ATCTCACTGATAATTTCTTATCGCATGTTATAACGATCAGTAACATATAC
CCAAATCTTCCaatcgaaaatttcgcaaaattaaatcctgaTATTGGAAA
TTTCGCAACGCCAGATAATAAGATCTTGCCAAGATATGACTTTGTAGTGA
TCGGTGCTGGATCGGCTGGAGCTGTCGTTGCCAGGCGTTTGAGTGAAAAC
AAATCATGGAAGATTCTCTTACTAGAGGCTGGTGGTGGCGCCAATATCTT
GACCGAGATTCCGGGtcttctcttcaacaatttcatgTCACTTAATGACT
GGTCATATAGAACTGAAGCAGCCAAAGATGGAAAAACATCAAGTATACAT
ACTAAAGGTCAAGTGATTTGGCCCAGAGGTAAAATACTTGGAGGAAGCAG
CTCAATAAACGGGTTAGTCTATGCTAGAGGTAATAAGCTAGATTATAACC
TATGGTCTGATCAAGGGAACCCAGGATGGAGCTATAAAGATGTGTTGCCA
TACTACTTAAAATCTGAAGACCAACGAATCAAAAACCTAGCCAAGGATAC
AGGACATCATTCTACAGGTGGTCGTCTGACAATCGAGGATGTTGACCGAA
AAGGAATTTTTCACAAACTTATGGAAGGTTGTAAGAAGGTGTTACCAGAA
AACCATGACTACAACGGTGGCACACAGACTGGATGTGTTTATTACCAAAA
CACAAAGACAAATGGACAACGATGTAGCACGGCTAACGCGTTTTTGAAGA
ATCCGCCATCAAATTTACACATAAGCCCCCTGTCACACGTTCTACAAATA
TCAATTCATGAAGATACACATCAAGCTACAGGTGTGGTGTATAAAAAGAA
TGGTAAAGTGGTAATAGTCAATGCTAGGAAAGAAGTCATCCTGTCTGCTG
GTGCTATTGCATCTCCACAGGTACGATATTAtgttttcaagcattttcaa
gcaaaaaaaaaggttttagtAGTTTTAATTAGTAAACCATTCTTTTATTT
CCTGGAATGTTTTAGAATAGTTTATAGCCCCTCCCCTGGGAAAATTACAT
TAAGTTCTAGGAGGttccaaaagaaaaaagcaaaagcCTTTCCTTAAAAC
CACTggaatttttcttgaaataccCCCTTTGTGAATATATCATGGAATTG
CCCAATAAATGAATAATAGTCTCGAATTTGAGTCAAACATGGACAAACAC
AAAGAACACCCTGTCTCAAAGGCCCTAAGGAACATTTTCccccagtgggg
atgaaaatttctatcgaaaacCCAAGATGGTTTTGGAGGGCAATTTATGC
CATTGATTTTCAAATGGGGATACAaataaagtcaatttcccagtggggct
gaaattatgtgttttttttccaaccagGAACAAAAGTTGGGCCAAATTTT
CAAGTGGGGCGGAGGTCCCAGCGgttctgtgacacagggatgtcAAAGAT
TtccaacctttaaaaaaaataaaattttattcttttttagtGTGTAAGGA
ACAGAAAACATACAAAGACGTGATACAAACTTGAGACTGATTTATATTAT
CCAAAATCTTAACTTTAGATTTTGATGCTATCAGGTGTAGGACCCAAAGA
GGAGCTTGAAAAACATGGTATACCACTCATCAAAGACCTTCCCGTTGGAC
AAAACTTGCAAGACCATGTGAACGTTGCACATCACATGACGTTCAATGAA
TCCATCGAAACTTTGCCAGAACAGTAAGTCaataaattatattttattaa
tgTTAATCGTCCATCCAAGTAAGCAAACGTATTTAATATTCCCGCTAATA
TTTCTCgataaaagaaatactactttccTATTTTCCAGTAATGGAAAGCA
TCGGTGGAATTCAATTTAGTCCTTTGAAACTTCATCTCTAACAAGGTTTC
TCATCATCATTCTNGGTTTTGGAGGACAATTTATGCCATTGATTTTCAAA
TGGGAAtacaaaatgaaatgaaaatttcccaGTGGGCCTGAAATTGTGTG
GTTTTTTCCCACCAGGAACAAAAGtttggccaaattttcaagTGGGGCAG
AGGGATGTCAAAGATTTCCaacctttaaaaaaacttattcttttttAGTG
TGTACAGGAACAGAAAACATACAAAGACGTGATACAAACTTGAGACTGAT
TTATATTATCCAAAATCTTGACTTTAGATTTTGATGCTATCAGGTGTAGG
ACCCAAAGAGGAGCTTGAAAAACATGGTATACCACTCATCAAAGACCTCC
CCGTTGGACAAAACTTGCAAGACCATGTGAACGTTGCACACCACATGACG
TTCAATGAATCCATCGAAACTTTGCCAGAACAGTAAGTCAATGTTAATCA
TCCACCCAAGTAAGCAAACGTATTTAACATTCCCGCTAATATTTCTCgat
aaaagaaatactactttcgGTGAATCGGTGGAATTCAATTTAGTCCTTTG
AAACTTCATCTCTAACAAGGTTTTTCATTATCATTCTAAAGACAAATTCC
ATTCACAGTTTTCAGACATTTGAAACTTACAAAGAATATCACCAACATCG
AACCGGTCTTCTCTCATCTGGCATCGTTCTCGGTGCATTCATGCCAGCAT
ctgaaaaagcaaagaaaaatgatTGGCCTGAAATTCAAACACATTTTTAT
CCACACTTGATAACATCACTCCCTGTATATCAACAAATTTTCAACTTCAA
TGAAGAGTACTGGAGAAATGTTATGCTGAAGGAATTGGAAGGGAAGAATG
GTGTCACTTTTGTCAACTGTCTTCTACGGCCAAAGAGCAGGTTTGGATGG
TTGTTATTTATGAAAAGTTAAAgctttgtttggttgatgtatAAAAacac
agttgacactctctaattcgattttcaagggggggTTGAAAAGGGAGCGT
ATCAAACACTAACGCGTTGTTTATGAGTGTTTCTTGCTGACGGTGACTtt
taatattatcgaataatgaagCGTATCGAAAATTAGAATTTCGGATTAGA
GAGTTGAAAAACAGGTTGTTAGGGTAAGTGCCCCATATTGCCTGGACTAA
AAGGATTCCAAATAACTGATTGAAAGGTCTCAACCGTTGACTATCTATCT
TTCAGAGGGCACATAAAATTGAGAAGTGCGAAGGCTGACGACCATCCGAT
CATCAccacaaattattttgagcatcCCGACGATCTTACGACCTTCGTTG
AGGCTTTCAAGTTCGGGAAGAAACTGGCAGCGGCACTGCCTCAATATAAT
GCTACACTCGTTGATTTGAATGATCCAGCTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055439-exon-scaffold_253-1491911889:975027..976046 | TCONS_00055439-exon-scaffold_253-1491911889:975027..976046 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1510915933:975027..976046 | TCONS_00055439-exon-scaffold_253-1510915933:975027..976046 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1575043694:975027..976046 | TCONS_00055439-exon-scaffold_253-1575043694:975027..976046 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1491911889:977304..977458 | TCONS_00055439-exon-scaffold_253-1491911889:977304..977458 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1510915933:977304..977458 | TCONS_00055439-exon-scaffold_253-1510915933:977304..977458 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1575043694:977304..977458 | TCONS_00055439-exon-scaffold_253-1575043694:977304..977458 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1491911889:977635..977916 | TCONS_00055439-exon-scaffold_253-1491911889:977635..977916 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1510915933:977635..977916 | TCONS_00055439-exon-scaffold_253-1510915933:977635..977916 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1575043694:977635..977916 | TCONS_00055439-exon-scaffold_253-1575043694:977635..977916 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1491911889:978232..978409 | TCONS_00055439-exon-scaffold_253-1491911889:978232..978409 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1510915933:978232..978409 | TCONS_00055439-exon-scaffold_253-1510915933:978232..978409 | Clytia hemisphaerica | exon |
| TCONS_00055439-exon-scaffold_253-1575043694:978232..978409 | TCONS_00055439-exon-scaffold_253-1575043694:978232..978409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:975027..978409 + |
Blast
BLAST of TCONS_00055439 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2) HSP 1 Score: 174.481 bits (441), Expect = 5.288e-47 Identity = 141/448 (31.47%), Postives = 204/448 (45.54%), Query Frame = 1
Query: 286 RLSENKSWKILLLEAG-----GGANILT---EIPGLLFNNFMSLN-DWSYRTEAAK--DGKTSSIHTKGQVIWPRGKILGGSSSINGLVYARGNKLDYNLWSDQGNPGWSYKDVLPYYLKSEDQRIKNLAKDTGHHSTGGRLTIED----VDRKGIFHKL----MEGCKKV-LPENHDYNGGTQTGCVYYQNTKTNGQRCSTANAFLKNPPSNLHISPLSHVLQISIHEDTHQATGVVYKKNGKVVIVNARKEVILSAGAIASPQILMLSGVGPKEELEKHGIPLIKDLP-VGQNLQDHVN--VAHHMTFNESIETLPEHFQTFETYKEYHQHRTGLLSSG-IVLGAFMPASEKAKKNDWPEIQTHFYPHLITS---LPVYQQIFNFNEEYWRNVMLKELEGKNGVTFVNCLLRPKSRGHIKLRSAKADDHPIITTNYFEHPDDLTTF 1548
RL+E+ + ++LLLEAG G+ L+ +P L N +W Y TE + DG+ + WPRG++ GGSSS+N +VY RG+ DY W QG GW Y LPY+ K++ GH R D V R H L +E ++ P D NG Q G + T G+R S A A+L S ++ + L + + +A GV Y KNG+ A KEVILS GAI SPQ+LMLSG+G ++L+K GIP++ LP VGQNLQDH+ + T ++ + + + E+ TG ++ + G F+ + P+IQ HF P + +P Q+ + + +R S G +KLRSA DHP+I NY D+ F
Sbjct: 58 RLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRV--------LYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQ-----------GHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPH---PDIQFHFLPSQVIDHGRVPTQQEAYQVHVGP---------------------MRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDF 462
The following BLAST results are available for this feature:
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