TCONS_00055442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055442
Unique NameTCONS_00055442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1912

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055442 ID=TCONS_00055442|Name=TCONS_00055442|organism=Clytia hemisphaerica|type=transcript|length=1912bp
GTTGTGTAAGCAAAAGCAGTCCActctaatatttttataagacaTCTGTG
GCTCGAAGAAAAGCTTATTTGTTCACAAATCAATATGAAGCAAGAAGATC
TCTTGAAATTAGGAGCAAGCTTTCTTGCTGGGAGTGTAACTGCTTTTGTG
GCTCTGAAAGTGGTTATACCAAAGCTCTCTGGTTGCTCAGCAAGCGAAGG
TCGATTCAACACTGCTCATGAACTTGACAAAGCAAAGGTTGTGAACAGCT
ATGATATAGAGGACCTTGGTGATAAAGTTGCCTTCTGTAGATGTTGGAAA
TCTAAAAAGTTCCCATACTGTGATGGTACCCACAACGCACACAACAAATT
AACAGGTGACAACCTTGGACCAGTATGCTTGAGTCGCAAAGAAAGTACTG
CATAATATCGATTAGGCTGTATAAaatttataagattttttattttattc
tttattatatattacacaaaTAGTAAGCAATGATTTCGTAGTGATTTTAT
ACTAATGATATTTTAATACCTATAGTggaaaaaacatttgaaaataccaa
aaaagattgtcgtttttattgttttttttcaagaactttgaCAGTATAAG
AATtatagaaaaaatttcaattccGGAAGACGGATCAAGTTTAAAATACG
TACTttagaatttttcgcgagcagaaactttcgcgaatcaccttgttaag
aattttcaaatgcaTTCACTTTCGCGAGATAGaccaaaattcacgaaaat
cgcgaaagtttgtacgcctaaagtatatggacatttatttgtttacattt
ttcgcATGATTTGTCTAtatacaatttcattttaaaatgaaagtctacaa
tcatggacaaaatatttgagacaaaggggatttcccggcGAAATTTTGAA
CActgcaaatgatttttaagcgcctgaaactacagttggaaagtagagtt
ttaacatgagacttaagaccttaggatctttataaaaactcaaatttgct
cgaataaggcttggaatatacgataaaggtcataatattttgagaatttt
ggttattttaacgtttttcaagatttaaagttccggcgagaaagtcgatt
ttgggctatctctttaatttaatcaaatatttcaatttggaaggggttgg
cagacttacaggctatattctgagccttattggactatttttgagtctta
agtctcatgttaaaactctacccttccaacctacttaaagcacttacaaa
tcgattgtggttcaaaaacttcccggtgtatttcccttttttctcaaata
ttatgagcTTGATtgtagcctagaagccaccgaaaaataaaaattgctaa
aatagcaattctcatccgaactttaaattctgaaaaacgttaaaatacac
taaaatgtcaatatatttcgaccatgattgtaaatCAATTAGAATATTCG
CCTTAAATTTAATTAACCTCATTAAACCAAACGACAAGGTAGCTTCTTCT
TTGTGAACAAGCGCAATTTATAAAATGGTCAGTACTCGTCTAATACACAG
AATCACTAGTTAAATGGGCGTCTTTGGTATTTAAATTAGTTCATATTTTG
GCACAATAGCAAGTGGTGGGATCTTGTGATTCTCCAACTCCACATTTCTT
AGGGATGCATTGACAACTGCACTTTGTTTTGTCCCATTCTTTCCTGAAGG
GGCATCTTTGAGGTGACGTCTTGCAAAGACACCCACATTCGTTGTTCGAC
CACTTAAAGTAAAAGAAGATCAgagcaaaaaatcgaaatttgacCCTTAG
AGACTAAGAAAAAGAGAATTATCAGTAATTACGCTAGGAAAAGAAGAAGT
CGAATTTCCAACATACACGAAGCTCCAAGGGGATAAaaatttacttcgaa
taaccgggaatT
Run BLAST on NCBI

protein sequence of TCONS_00055442-protein

>TCONS_00055442-protein ID=TCONS_00055442-protein|Name=TCONS_00055442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MKQEDLLKLGASFLAGSVTAFVALKVVIPKLSGCSASEGRFNTAHELDKA
KVVNSYDIEDLGDKVAFCRCWKSKKFPYCDGTHNAHNKLTGDNLGPVCLS
RKESTA
Run BLAST on NCBI

transcript from alignment at scaffold_253:1042351..1046337+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055442 ID=TCONS_00055442|Name=TCONS_00055442|organism=Clytia hemisphaerica|type=transcript|length=3987bp|location=Sequence derived from alignment at scaffold_253:1042351..1046337+ (Clytia hemisphaerica)
GTTGTGTAAGCAAAAGCAGTCCActctaatatttttataagacaTCTGTG
GCTCGAAGAAAAGGCAGGTATTTTTGTGCACAAATTCGAAAAACAAATTT
GGAATTTCAGGTGTCTTCATATTCTTCTCTTTATATACAACTACTGCCAT
TCTTTTCTTCCCTAGCTTATTTGTTCACAAATCAATATGAAGCAAGAAGA
TCTCTTGAAATTAGGAGCAAGCTTTCTTGCTGGGAGTGTAACTGCTTTTG
TGGCTCTGAAAGTGGTTATACCAAAGGTATGGTGTTTTATCAATTTAATT
AAAAGCTCTACAGTAGTCCTACTCTAGCATGAATTATAACTTTGGAAATG
TGGTTGTTTCGTCCCTTATATTCATAGAAACCTGAATTTATCAGATGTGG
CATTGTGGGCATGTATTATAGTCGTACCGGTCGTACTACCGTGAGTTGGT
CTATCTAAATAATCTTATAATATATCAACATCCCTCctcgtctaattctg
acacccttctttagagaaagaactaatatgaaagcttgaatcgctgattg
aaaaaggattattcctctctgaccactaaagaaaaacaaagaaaaacagt
ttacGACCCTGCCGCCgccggtgcacccgacagtcgggtgctgtcgggtg
ttttgtcgggtgctgaaatttctaaatttgcaaaaacacCCGACAATAGC
GCACCCAACAGTCGGGTGCTAAAATTCCTAACTTACATGTCGGGTGCTGT
TAAAAGCGCccaagataaaaaaaaagtccaaaaaatggcgattttgatga
cgtcagcattattAATGacagtaaaaaattaaaaagtcgaCCAGCTCATC
ATGTAGCCCTGATCATAGGCTTTCAGAAAAGTATATGGTTTAGTAGTATG
TTTAAGTAGCACCCGACAAAagtgcacccgactgtcgggtgtttAAATTT
CTAACTTCAAACACCCGACAACAACatccgactgtcgggtgcaccggcag
ggtcgtaacagtttcaacctttctataaatttcagctgataaaaagggtg
tagGAATtatagaggaggggtgtcgacattagaccaagttacgctATAGG
GCTGTAGAGGGAGGCACTTGATTAAAAAACAACCGTATGTgcagcccaaa
attaggcctttaaaaTCAGACCCTTAAGGCTTGGGGGCATCGggcacgag
aagtttttttcgcgttggtgcaatgcaacatatgctctccatcccaccaa
cacaagaaaaatcttttaagtAATCAACCATTAATTTGTCATTGTTTttt
tagcaaaaggtctatcttCAAGGTCAGTACACCCCCTCACTGGGTTAAAA
GTATTCCAATTTATTATTTACCTGACAGttaatttgaaaagaacaccttt
tttaatctttgcaattattttcttaatttttatcaGCTCTCTGGTTGCTC
AGCAAGCGAAGGTCGATTCAACACTGCTCATGAACTTGACAAAGCAAAGG
TTGTGAACAGCTATGATATAGAGGACCTTGGTGATAAAGTTGCCTTCTGT
AGATGTTGGAAATCTAAAAAGGTAAACACTTACAGGGTCCTTTTTTTGag
ttaaaatttggtaagatGGTTTTGTTACTTACATACTTGTGTTACTTGGT
GTAGGTGTTCAAGTAGAGTGCCCGGGCAAGATTCTTTGTGAACCATGCCT
CAGTACGATCAAAATGTCGAGAGCAGACACTTTTCATGTCAAGTATTGAA
TTTGAATCAGCTCTCTTGCACCCAGTTTATCCATGAATTTAGGGTTCATC
GGGGATCAACTTTTGAGTGTCAAGggcatttttaaacttttcagttgaag
tgttttttttaagtttcttatGTTCTTTGGTATTGCATTGAATAGCTTTG
CACCTTGTACAAAAAGAGTGCAATCTCTAAGCTTGGATGTTTGATTCCTT
GAAAGGTGGCACAGCCAGCTGCAGCCAGCGATTTTTGTAAGCTTTTATAC
TTCTATTCGCCCTAGGTACTATACCTTCTAACACCTTCCAAACATAGATG
ATGCGATAATGTCCCCTTCTCCTTTCAATGGAATAGATTTTGGATTGTTT
AAGACATACAAACAATAATTGGTTGAAGTGCCTTTTATCCTTCTTAGAAA
GGATTTATGATTAATGAACGTCTTCAAATCTCAGAGACCAACCTGGACCA
GTATTTGGACTTCATAAAACAGAGCTTAAATAAAAGGGAACTTATTCCGT
CCGTTTGGTAATTTAGTTGGATATCTGAATTCGTTTTCTGTCAAGACTTA
TGTATGTTTTTATTTAAGGAACAcattaaaatttaaatattaaatTCTTT
CTGTGACACTCCAAataatttttctctatttcagTTCCCATACTGTGATG
GTACCCACAACGCACACAACAAATTAACAGGTGACAACCTTGGACCAGTA
TGCTTGAGTCGCAAAGAAAGTACTGCATAATATCGATTAGGCTGTATAAa
atttataagattttttattttattctttattatatattacacaaaTAGTA
AGCAATGATTTCGTAGTGATTTTATACTAATGATATTTTAATACCTATAG
Tggaaaaaacatttgaaaataccaaaaaagattgtcgtttttattgtttt
ttttcaagaactttgaCAGTATAAGAATtatagaaaaaatttcaattccG
GAAGACGGATCAAGTTTAAAATACGTACTttagaatttttcgcgagcaga
aactttcgcgaatcaccttgttaagaattttcaaatgcaTTCACTTTCGC
GAGATAGaccaaaattcacgaaaatcgcgaaagtttgtacgcctaaagta
tatggacatttatttgtttacatttttcgcATGATTTGTCTAtatacaat
ttcattttaaaatgaaagtctacaatcatggacaaaatatttgagacaaa
ggggatttcccggcGAAATTTTGAACActgcaaatgatttttaagcgcct
gaaactacagttggaaagtagagttttaacatgagacttaagaccttagg
atctttataaaaactcaaatttgctcgaataaggcttggaatatacgata
aaggtcataatattttgagaattttggttattttaacgtttttcaagatt
taaagttccggcgagaaagtcgattttgggctatctctttaatttaatca
aatatttcaatttggaaggggttggcagacttacaggctatattctgagc
cttattggactatttttgagtcttaagtctcatgttaaaactctaccctt
ccaacctacttaaagcacttacaaatcgattgtggttcaaaaacttcccg
gtgtatttcccttttttctcaaatattatgagcTTGATtgtagcctagaa
gccaccgaaaaataaaaattgctaaaatagcaattctcatccgaacttta
aattctgaaaaacgttaaaatacactaaaatgtcaatatatttcgaccat
gattgtaaatCAATTAGAATATTCGCCTTAAATTTAATTAACCTCATTAA
ACCAAACGACAAGGTAGCTTCTTCTTTGTGAACAAGCGCAATTTATAAAA
TGGTCAGTACTCGTCTAATACACAGAATCACTAGTTAAATGGGCGTCTTT
GGTATTTAAATTAGTTCATATTTTGGCACAATAGCAAGTGGTGGGATCTT
GTGATTCTCCAACTCCACATTTCTTAGGGATGCATTGACAACTGCACTTT
GTTTTGTCCCATTCTTTCCTGAAGGGGCATCTTTGAGGTGACGTCTTGCA
AAGACACCCACATTCGTTGTTCGACCACTTAAAGTAAAAGAAGATCAgag
caaaaaatcgaaatttgacCCTTAGAGACTAAGAAAAAGAGAATTATCAG
TAATTACGCTAGGAAAAGAAGAAGTCGAATTTCCAACATACACGAAGCTC
CAAGGGGATAAaaatttacttcgaataaccgggaatT

Coding sequence (CDS) from alignment at scaffold_253:1042351..1046337+

>TCONS_00055442 ID=TCONS_00055442|Name=TCONS_00055442|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_253:1042351..1046337+ (Clytia hemisphaerica)
ATGAAGCAAGAAGATCTCTTGAAATTAGGAGCAAGCTTTCTTGCTGGGAG
TGTAACTGCTTTTGTGGCTCTGAAAGTGGTTATACCAAAGCTCTCTGGTT
GCTCAGCAAGCGAAGGTCGATTCAACACTGCTCATGAACTTGACAAAGCA
AAGGTTGTGAACAGCTATGATATAGAGGACCTTGGTGATAAAGTTGCCTT
CTGTAGATGTTGGAAATCTAAAAAGTTCCCATACTGTGATGGTACCCACA
ACGCACACAACAAATTAACAGGTGACAACCTTGGACCAGTATGCTTGAGT
CGCAAAGAAAGTACTGCATAAATGAAGCAAGAAGATCTCTTGAAATTAGG
AGCAAGCTTTCTTGCTGGGAGTGTAACTGCTTTTGTGGCTCTGAAAGTGG
TTATACCAAAGCTCTCTGGTTGCTCAGCAAGCGAAGGTCGATTCAACACT
GCTCATGAACTTGACAAAGCAAAGGTTGTGAACAGCTATGATATAGAGGA
CCTTGGTGATAAAGTTGCCTTCTGTAGATGTTGGAAATCTAAAAAGTTCC
CATACTGTGATGGTACCCACAACGCACACAACAAATTAACAGGTGACAAC
CTTGGACCAGTATGCTTGAGTCGCAAAGAAAGTACTGCATAAATGAAGCA
AGAAGATCTCTTGAAATTAGGAGCAAGCTTTCTTGCTGGGAGTGTAACTG
CTTTTGTGGCTCTGAAAGTGGTTATACCAAAGCTCTCTGGTTGCTCAGCA
AGCGAAGGTCGATTCAACACTGCTCATGAACTTGACAAAGCAAAGGTTGT
GAACAGCTATGATATAGAGGACCTTGGTGATAAAGTTGCCTTCTGTAGAT
GTTGGAAATCTAAAAAGTTCCCATACTGTGATGGTACCCACAACGCACAC
AACAAATTAACAGGTGACAACCTTGGACCAGTATGCTTGAGTCGCAAAGA
AAGTACTGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034889XLOC_034889Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055442-proteinTCONS_00055442-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055442-exon-scaffold_253-1491911889:1042351..1042413TCONS_00055442-exon-scaffold_253-1491911889:1042351..1042413Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1510915933:1042351..1042413TCONS_00055442-exon-scaffold_253-1510915933:1042351..1042413Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1575043694:1042351..1042413TCONS_00055442-exon-scaffold_253-1575043694:1042351..1042413Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1491911889:1042516..1042626TCONS_00055442-exon-scaffold_253-1491911889:1042516..1042626Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1510915933:1042516..1042626TCONS_00055442-exon-scaffold_253-1510915933:1042516..1042626Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1575043694:1042516..1042626TCONS_00055442-exon-scaffold_253-1575043694:1042516..1042626Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1491911889:1043787..1043921TCONS_00055442-exon-scaffold_253-1491911889:1043787..1043921Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1510915933:1043787..1043921TCONS_00055442-exon-scaffold_253-1510915933:1043787..1043921Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1575043694:1043787..1043921TCONS_00055442-exon-scaffold_253-1575043694:1043787..1043921Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1491911889:1044735..1046337TCONS_00055442-exon-scaffold_253-1491911889:1044735..1046337Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1510915933:1044735..1046337TCONS_00055442-exon-scaffold_253-1510915933:1044735..1046337Clytia hemisphaericaexon
TCONS_00055442-exon-scaffold_253-1575043694:1044735..1046337TCONS_00055442-exon-scaffold_253-1575043694:1044735..1046337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1042351..1046337 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
104.394	103.271	111.357	125.564	79.25	57.9782	89.1537	94.3145	69.5794	63.2299	48.953	52.9264	33.0324	31.4213	42.526	55.2914	83.9416	76.8481	26.1297	24.8886	52.2016	50.6759	63.5584	56.149	25.0488	28.0542	49.7306	30.7675	63.2145	55.4141
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018967FeS-contain_CDGSH-typ
Vocabulary: Cellular Component
TermDefinition
GO:0043231intracellular membrane-bounded organelle
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
Blast
[Close]
BLAST of TCONS_00055442 vs. Swiss-Prot (Human)
Match: CISD1 (CDGSH iron-sulfur domain-containing protein 1 OS=Homo sapiens GN=CISD1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.749e-21
Identity = 33/57 (57.89%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:  226 DKAKVVNSYDIEDLGDKVAFCRCWKSKKFPYCDGTHNAHNKLTGDNLGPVCLSRKES 396
            D  K+V+++D+EDLGDK  +CRCW+SKKFP+CDG H  HN+ TGDN+GP+ + +KE+
Sbjct:   52 DNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKET 108
The following BLAST results are available for this feature:
BLAST of TCONS_00055442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CISD18.749e-2157.89CDGSH iron-sulfur domain-containing protein 1 OS=H... [more]
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