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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055443 ID=TCONS_00055443|Name=TCONS_00055443|organism=Clytia hemisphaerica|type=transcript|length=1898bp
GTCCActctaatatttttataagacaTCTGTGGCTCGAAGAAAAGGCAGC
TTATTTGTTCACAAATCAATATGAAGCAAGAAGATCTCTTGAAATTAGGA
GCAAGCTTTCTTGCTGGGAGTGTAACTGCTTTTGTGGCTCTGAAAGTGGT
TATACCAAAGCTCTCTGGTTGCTCAGCAAGCGAAGGTCGATTCAACACTG
CTCATGAACTTGACAAAGCAAAGGTTGTGAACAGCTATGATATAGAGGAC
CTTGGTGATAAAGTTGCCTTCTGTAGATGTTGGAAATCTAAAAAGTTCCC
ATACTGTGATGGTACCCACAACGCACACAACAAATTAACAGGTGACAACC
TTGGACCAGTATGCTTGAGTCGCAAAGAAAGTACTGCATAATATCGATTA
GGCTGTATAAaatttataagattttttattttattctttattatatatta
cacaaaTAGTAAGCAATGATTTCGTAGTGATTTTATACTAATGATATTTT
AATACCTATAGTggaaaaaacatttgaaaataccaaaaaagattgtcgtt
tttattgttttttttcaagaactttgaCAGTATAAGAATtatagaaaaaa
tttcaattccGGAAGACGGATCAAGTTTAAAATACGTACTttagaatttt
tcgcgagcagaaactttcgcgaatcaccttgttaagaattttcaaatgca
TTCACTTTCGCGAGATAGaccaaaattcacgaaaatcgcgaaagtttgta
cgcctaaagtatatggacatttatttgtttacatttttcgcATGATTTGT
CTAtatacaatttcattttaaaatgaaagtctacaatcatggacaaaata
tttgagacaaaggggatttcccggcGAAATTTTGAACActgcaaatgatt
tttaagcgcctgaaactacagttggaaagtagagttttaacatgagactt
aagaccttaggatctttataaaaactcaaatttgctcgaataaggcttgg
aatatacgataaaggtcataatattttgagaattttggttattttaacgt
ttttcaagatttaaagttccggcgagaaagtcgattttgggctatctctt
taatttaatcaaatatttcaatttggaaggggttggcagacttacaggct
atattctgagccttattggactatttttgagtcttaagtctcatgttaaa
actctacccttccaacctacttaaagcacttacaaatcgattgtggttca
aaaacttcccggtgtatttcccttttttctcaaatattatgagcTTGATt
gtagcctagaagccaccgaaaaataaaaattgctaaaatagcaattctca
tccgaactttaaattctgaaaaacgttaaaatacactaaaatgtcaatat
atttcgaccatgattgtaaatCAATTAGAATATTCGCCTTAAATTTAATT
AACCTCATTAAACCAAACGACAAGGTAGCTTCTTCTTTGTGAACAAGCGC
AATTTATAAAATGGTCAGTACTCGTCTAATACACAGAATCACTAGTTAAA
TGGGCGTCTTTGGTATTTAAATTAGTTCATATTTTGGCACAATAGCAAGT
GGTGGGATCTTGTGATTCTCCAACTCCACATTTCTTAGGGATGCATTGAC
AACTGCACTTTGTTTTGTCCCATTCTTTCCTGAAGGGGCATCTTTGAGGT
GACGTCTTGCAAAGACACCCACATTCGTTGTTCGACCACTTAAAGTAAAA
GAAGATCAgagcaaaaaatcgaaatttgacCCTTAGAGACTAAGAAAAAG
AGAATTATCAGTAATTACGCTAGGAAAAGAAGAAGTCGAATTTCCAACAT
ACACGAAGCTCCAAGGGGATAAaaatttacttcgaataaccgggaatT Run BLAST on NCBI transcript from alignment at scaffold_253:1042369..1046337+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055443 ID=TCONS_00055443|Name=TCONS_00055443|organism=Clytia hemisphaerica|type=transcript|length=3969bp|location=Sequence derived from alignment at scaffold_253:1042369..1046337+ (Clytia hemisphaerica)
GTCCActctaatatttttataagacaTCTGTGGCTCGAAGAAAAGGCAGG
TATTTTTGTGCACAAATTCGAAAAACAAATTTGGAATTTCAGGTGTCTTC
ATATTCTTCTCTTTATATACAACTACTGCCATTCTTTTCTTCCCTAGCTT
ATTTGTTCACAAATCAATATGAAGCAAGAAGATCTCTTGAAATTAGGAGC
AAGCTTTCTTGCTGGGAGTGTAACTGCTTTTGTGGCTCTGAAAGTGGTTA
TACCAAAGGTATGGTGTTTTATCAATTTAATTAAAAGCTCTACAGTAGTC
CTACTCTAGCATGAATTATAACTTTGGAAATGTGGTTGTTTCGTCCCTTA
TATTCATAGAAACCTGAATTTATCAGATGTGGCATTGTGGGCATGTATTA
TAGTCGTACCGGTCGTACTACCGTGAGTTGGTCTATCTAAATAATCTTAT
AATATATCAACATCCCTCctcgtctaattctgacacccttctttagagaa
agaactaatatgaaagcttgaatcgctgattgaaaaaggattattcctct
ctgaccactaaagaaaaacaaagaaaaacagtttacGACCCTGCCGCCgc
cggtgcacccgacagtcgggtgctgtcgggtgttttgtcgggtgctgaaa
tttctaaatttgcaaaaacacCCGACAATAGCGCACCCAACAGTCGGGTG
CTAAAATTCCTAACTTACATGTCGGGTGCTGTTAAAAGCGCccaagataa
aaaaaaagtccaaaaaatggcgattttgatgacgtcagcattattAATGa
cagtaaaaaattaaaaagtcgaCCAGCTCATCATGTAGCCCTGATCATAG
GCTTTCAGAAAAGTATATGGTTTAGTAGTATGTTTAAGTAGCACCCGACA
AAagtgcacccgactgtcgggtgtttAAATTTCTAACTTCAAACACCCGA
CAACAACatccgactgtcgggtgcaccggcagggtcgtaacagtttcaac
ctttctataaatttcagctgataaaaagggtgtagGAATtatagaggagg
ggtgtcgacattagaccaagttacgctATAGGGCTGTAGAGGGAGGCACT
TGATTAAAAAACAACCGTATGTgcagcccaaaattaggcctttaaaaTCA
GACCCTTAAGGCTTGGGGGCATCGggcacgagaagtttttttcgcgttgg
tgcaatgcaacatatgctctccatcccaccaacacaagaaaaatctttta
agtAATCAACCATTAATTTGTCATTGTTTttttagcaaaaggtctatctt
CAAGGTCAGTACACCCCCTCACTGGGTTAAAAGTATTCCAATTTATTATT
TACCTGACAGttaatttgaaaagaacaccttttttaatctttgcaattat
tttcttaatttttatcaGCTCTCTGGTTGCTCAGCAAGCGAAGGTCGATT
CAACACTGCTCATGAACTTGACAAAGCAAAGGTTGTGAACAGCTATGATA
TAGAGGACCTTGGTGATAAAGTTGCCTTCTGTAGATGTTGGAAATCTAAA
AAGGTAAACACTTACAGGGTCCTTTTTTTGagttaaaatttggtaagatG
GTTTTGTTACTTACATACTTGTGTTACTTGGTGTAGGTGTTCAAGTAGAG
TGCCCGGGCAAGATTCTTTGTGAACCATGCCTCAGTACGATCAAAATGTC
GAGAGCAGACACTTTTCATGTCAAGTATTGAATTTGAATCAGCTCTCTTG
CACCCAGTTTATCCATGAATTTAGGGTTCATCGGGGATCAACTTTTGAGT
GTCAAGggcatttttaaacttttcagttgaagtgttttttttaagtttct
tatGTTCTTTGGTATTGCATTGAATAGCTTTGCACCTTGTACAAAAAGAG
TGCAATCTCTAAGCTTGGATGTTTGATTCCTTGAAAGGTGGCACAGCCAG
CTGCAGCCAGCGATTTTTGTAAGCTTTTATACTTCTATTCGCCCTAGGTA
CTATACCTTCTAACACCTTCCAAACATAGATGATGCGATAATGTCCCCTT
CTCCTTTCAATGGAATAGATTTTGGATTGTTTAAGACATACAAACAATAA
TTGGTTGAAGTGCCTTTTATCCTTCTTAGAAAGGATTTATGATTAATGAA
CGTCTTCAAATCTCAGAGACCAACCTGGACCAGTATTTGGACTTCATAAA
ACAGAGCTTAAATAAAAGGGAACTTATTCCGTCCGTTTGGTAATTTAGTT
GGATATCTGAATTCGTTTTCTGTCAAGACTTATGTATGTTTTTATTTAAG
GAACAcattaaaatttaaatattaaatTCTTTCTGTGACACTCCAAataa
tttttctctatttcagTTCCCATACTGTGATGGTACCCACAACGCACACA
ACAAATTAACAGGTGACAACCTTGGACCAGTATGCTTGAGTCGCAAAGAA
AGTACTGCATAATATCGATTAGGCTGTATAAaatttataagattttttat
tttattctttattatatattacacaaaTAGTAAGCAATGATTTCGTAGTG
ATTTTATACTAATGATATTTTAATACCTATAGTggaaaaaacatttgaaa
ataccaaaaaagattgtcgtttttattgttttttttcaagaactttgaCA
GTATAAGAATtatagaaaaaatttcaattccGGAAGACGGATCAAGTTTA
AAATACGTACTttagaatttttcgcgagcagaaactttcgcgaatcacct
tgttaagaattttcaaatgcaTTCACTTTCGCGAGATAGaccaaaattca
cgaaaatcgcgaaagtttgtacgcctaaagtatatggacatttatttgtt
tacatttttcgcATGATTTGTCTAtatacaatttcattttaaaatgaaag
tctacaatcatggacaaaatatttgagacaaaggggatttcccggcGAAA
TTTTGAACActgcaaatgatttttaagcgcctgaaactacagttggaaag
tagagttttaacatgagacttaagaccttaggatctttataaaaactcaa
atttgctcgaataaggcttggaatatacgataaaggtcataatattttga
gaattttggttattttaacgtttttcaagatttaaagttccggcgagaaa
gtcgattttgggctatctctttaatttaatcaaatatttcaatttggaag
gggttggcagacttacaggctatattctgagccttattggactatttttg
agtcttaagtctcatgttaaaactctacccttccaacctacttaaagcac
ttacaaatcgattgtggttcaaaaacttcccggtgtatttcccttttttc
tcaaatattatgagcTTGATtgtagcctagaagccaccgaaaaataaaaa
ttgctaaaatagcaattctcatccgaactttaaattctgaaaaacgttaa
aatacactaaaatgtcaatatatttcgaccatgattgtaaatCAATTAGA
ATATTCGCCTTAAATTTAATTAACCTCATTAAACCAAACGACAAGGTAGC
TTCTTCTTTGTGAACAAGCGCAATTTATAAAATGGTCAGTACTCGTCTAA
TACACAGAATCACTAGTTAAATGGGCGTCTTTGGTATTTAAATTAGTTCA
TATTTTGGCACAATAGCAAGTGGTGGGATCTTGTGATTCTCCAACTCCAC
ATTTCTTAGGGATGCATTGACAACTGCACTTTGTTTTGTCCCATTCTTTC
CTGAAGGGGCATCTTTGAGGTGACGTCTTGCAAAGACACCCACATTCGTT
GTTCGACCACTTAAAGTAAAAGAAGATCAgagcaaaaaatcgaaatttga
cCCTTAGAGACTAAGAAAAAGAGAATTATCAGTAATTACGCTAGGAAAAG
AAGAAGTCGAATTTCCAACATACACGAAGCTCCAAGGGGATAAaaattta
cttcgaataaccgggaatT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055443-exon-scaffold_253-1491911889:1042369..1042417 | TCONS_00055443-exon-scaffold_253-1491911889:1042369..1042417 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1510915933:1042369..1042417 | TCONS_00055443-exon-scaffold_253-1510915933:1042369..1042417 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1575043694:1042369..1042417 | TCONS_00055443-exon-scaffold_253-1575043694:1042369..1042417 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1491911889:1042516..1042626 | TCONS_00055443-exon-scaffold_253-1491911889:1042516..1042626 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1510915933:1042516..1042626 | TCONS_00055443-exon-scaffold_253-1510915933:1042516..1042626 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1575043694:1042516..1042626 | TCONS_00055443-exon-scaffold_253-1575043694:1042516..1042626 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1491911889:1043787..1043921 | TCONS_00055443-exon-scaffold_253-1491911889:1043787..1043921 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1510915933:1043787..1043921 | TCONS_00055443-exon-scaffold_253-1510915933:1043787..1043921 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1575043694:1043787..1043921 | TCONS_00055443-exon-scaffold_253-1575043694:1043787..1043921 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1491911889:1044735..1046337 | TCONS_00055443-exon-scaffold_253-1491911889:1044735..1046337 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1510915933:1044735..1046337 | TCONS_00055443-exon-scaffold_253-1510915933:1044735..1046337 | Clytia hemisphaerica | exon |
| TCONS_00055443-exon-scaffold_253-1575043694:1044735..1046337 | TCONS_00055443-exon-scaffold_253-1575043694:1044735..1046337 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:1042369..1046337 + |
Blast
BLAST of TCONS_00055443 vs. Swiss-Prot (Human)
Match: CISD1 (CDGSH iron-sulfur domain-containing protein 1 OS=Homo sapiens GN=CISD1 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.042e-20 Identity = 33/59 (55.93%), Postives = 48/59 (81.36%), Query Frame = 2
Query: 206 ELDKAKVVNSYDIEDLGDKVAFCRCWKSKKFPYCDGTHNAHNKLTGDNLGPVCLSRKES 382
+ D K+V+++D+EDLGDK +CRCW+SKKFP+CDG H HN+ TGDN+GP+ + +KE+
Sbjct: 50 QKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKET 108
The following BLAST results are available for this feature:
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