TCONS_00055444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055444
Unique NameTCONS_00055444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1975

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055444 ID=TCONS_00055444|Name=TCONS_00055444|organism=Clytia hemisphaerica|type=transcript|length=1975bp
ATTGTGTTGAGAAATAGAACAAGCGAATGTTAAGAAACCAGCAGCATAGA
GAGCAATATACAGTATAAAAATACCCATCCTACACTTTATAAtagttttt
tttctattatttctcTACTTGTGAGACTGCtgacaaatgttaaaataatt
tgTCCGTCATTAAGCAAAGCAGCTTTATTATTGAGTACTTTTGTAGAAGT
AATGATCAGTTAATAGTTGGTTACCGCTTGGTGAGGAAGTAAACAGAACT
GttgttgacaaaatattttgctttggCTGGTGAAGATGGCATTACAAACA
ATTTGCATCTCAATTCTGATTCTGTTAGTCATGAACTTGACTTTCACGCA
AAACAGACGCCTTGAAGATGAATTTTGGCAAGAGGGAGAGGGAGATTTTC
CAAGAGGAGAAACTATGATTGAAAGACTCGATGATATCACCAACGAAGTC
AGAGATATCAGGGAAGGGTTGAGAGATAGTCCAATAGACGAACAGTCTGA
TTCTTACGGAGATAATAGCAACGATGACGAAAACTATGGAGATAATAATG
AAGAAGATAACGATGTAGAAGAATTGAAGAAAGATGCAATGATTAAGAAA
GCCAAAAAGGCATCAAGCAAACACATCCAGTATGAAGACCCCAAACTAAC
GAAATACAAAGCCTTTTTGATGAAACTATCACAAGTCAATGATTATGAAG
ATTTCAAGAGAACATTCAAAGTCAGAGAACCAGTAACATTCAAAAGAACC
AATCAGATACCAATGGcTCCAATGAAAGTACCAGAATGCGACAAACAAGC
ACCGAAGCTGGTGACAATGCCGATTGACTTCACCTCATCCACTCACTACA
TCTATCCGGATTGTTTGGAAGTGAAACGATGTACGAATGTTGGTTGTTGT
AAATTACCAAATCAAGAGTGTGGCGGtaaaacaaaaatcaagaaGCAAGT
CAGAGTTTATAAAATTGNgctactgcaggagcttcgaaagttaaaagtga
cgtcaaaaaatcgaatgtttagagcccgaaaacccgggctcaaaacattc
gaaaaagtggcaaagtggaatagaccaAAGTGGAATAggcgttaattgcg
taaaaaaacgcaggtgacgtctagtataggctacgtattgggtggaaaat
tttaaaagttctcagaagactctccagtggtgcatatcatgaattagaaa
gattaatataacaatagcgttcagtttgaggtcgttgttgttattgaTTA
TTGTAGTTTGATTATTCGCCcgatagtgtcatttgggcccgacgcgaagc
ggagggcgcaaatggcactaTCNAAAAATCAAGAAGCAAGTCAGAGTTTA
TAAAATTGATCACTCCACCCATGCTGTGGATTTCCACACGGTGAGTTATG
AAGATGATGATGTTTGTGGATGCACTTGCAAAACGAAAGCCGATGATTGC
AAGTCTCCTCATGTCTTGGATTCAACCACTTGTAGATGTGAATGTCCTTT
GAAACCCAAAACTGATTGTGGTGTCAATAAACAGTGGTCGTCATTTTACT
GCGCATGCGTGTGCACCGACAAAAATCCAACTTGTGATCCAAACGAAGTA
TGGGACATCAACAATTGTAAGTGCGAAAAAGCTACTCCGCCAACCTGTCC
ATCTGCTACCATTTTggattccaaaatttgcagatGTCGATAATTTTAAA
TattgttttatgaattttataGCACCTATgaaagaaagttgaaaaaatac
agatttatagattatttttgcttgtttgttgtaaatatgttattttttat
ATCATGCGATAAAAGTTGTGTTGAAAAGgggaataattaaaaaattctgT
TGTCCATAGTTTCCTTCTTACCAATAATATAGTTCAGAATATGCggcaca
ttttttgaaatcttacaAGATATTtgactttcaatccggcgtttgtgtga
aaaccacgcgtaCCACGCATCtcag
Run BLAST on NCBI

protein sequence of TCONS_00055444-protein

>TCONS_00055444-protein ID=TCONS_00055444-protein|Name=TCONS_00055444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MALQTICISILILLVMNLTFTQNRRLEDEFWQEGEGDFPRGETMIERLDD
ITNEVRDIREGLRDSPIDEQSDSYGDNSNDDENYGDNNEEDNDVEELKKD
AMIKKAKKASSKHIQYEDPKLTKYKAFLMKLSQVNDYEDFKRTFKVREPV
TFKRTNQIPMAPMKVPECDKQAPKLVTMPIDFTSSTHYIYPDCLEVKRCT
NVGCCKLPNQECGGKTKIKKQVRVYKIXLLQELRKLKVTSKNRMFRARKP
GLKTFEKVAKWNRPKWNRR
Run BLAST on NCBI

transcript from alignment at scaffold_253:1068843..1076979+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055444 ID=TCONS_00055444|Name=TCONS_00055444|organism=Clytia hemisphaerica|type=transcript|length=8137bp|location=Sequence derived from alignment at scaffold_253:1068843..1076979+ (Clytia hemisphaerica)
ATTGTGTTGAGAAATAGAACAAGCGAATGTTAAGAAACCAGCAGCATAGA
GAGCAATATACAGTATAAAAATACCCATCCTACACTTTATAAtagttttt
tttctattatttctcTACTTGTGAGACTGCtgacaaatgttaaaataatt
tgTCCGTCATTAAGCAAAGCAGCTTTATTATTGAGTACTTTTGTAGAAGT
AATGATCAGTTAATAGTTGGTTACCGCTTGGTGAGGAAGTAAACAGAACT
GttgttgacaaaatattttgctttggCTGGTGAAGGTAAATTCATATGTT
TGTCTCGTATTTCTTTAGGGTAAAAACCAACAATAACACAAAAAGTTGGT
TCTGGACTCATTTAATTGGTTCTTTATTaataaaattaatgaaaatgcga
gtaaaaattcttcaaatttctttgtAAACTGACTTTGAAAAGAAGAGAGT
TATGGTTTACATCCAGATCTTTAGCATCCAGACAGAGTTTCATTCACTAG
GGAAAGATCAGATTCAGCAACTGGCTTTTTGTCGCCAGGTTTTCAGGCTA
GGTATGGAATGGAGTAAAGAAAAAGTGACAACTGAGAGGGCCACGTTTGC
TCGTAGTGATTATTAAAAAACAGACCACACCCTTTCAGCAACAAAAAACC
CCAGTTTTCCAATATTTCTTCCTCTATTTTTGAACAGGCAACATACAAAA
TGTTTCCAAAACCTCAAAGGTTTTCTTATTGAAAGCTTTTCAAGGAATCG
TTGTTATTAAAACTTTGTCATTATTCTTAAAAGACCTCGtaatagaaaaa
agttgccatAAGGAGTCTCATAaactcattttcaaaattgatttcaaatt
tcgattttcaaacaaatttgtgaTAATCAAATGAGGTTATCATTCGTTTA
TGCCATGTCGAAACATCTTTTGAATTGCACGACACCAATAAAAGGGGGGA
AATTCTTGGTCAAACTTCCCAAAGATAACACATGGGCAGATTCGATTCTT
TATATTTTGTTTCCTCCGCCAATATCTATTTTACTTACTATCTACTATTA
CTTTAGGTATCTATATTTCTAGAATTCATATAACTTCCGTTTAAATGCAC
CATCATAGTCATCAATACACTCGTTTTCTACTTTTCTACGTGTAGTTCAT
ACAAAATCCGTTTAATGAtagaaatttgtttaaaaattttggaagctTTG
AATCTTggttgaaataaaaacattagcCATAACAAAATTCCAGGCATAGT
ACTTTCTTATAAGAAACCCtcaggaaatatttttttgtctacAAAACTGT
GTCGCTAAGCTGGAAAGGGTCCTTTGTTAAAATAGCGTCCACCAGGTCAG
TGAGGTAGGGTCATATCCTGAAATGATCTTAATGCAAAAGCTTTGCCAGG
TATGGCGATTACTATTTAAAAGGGATTACATGATGAACGATGGGTGATAA
GGTGCACCTCTAGGATCCAGGGTCCACCCATTGATTGGTCTGATGGGTGA
CCTATGAAGACAAAATGGCACTTACTTCTATCATATAAAGTGACAATAAC
ATACTATTCATGCTTGAAGTTGAACGTAAACTTTGCCGGATAATACCAAA
CTTTCTTTGTTCAGAAATATTGTAGTCCTCGTATGACAATGTCGAACATT
AAGTTTGAAATCCAAATAGCTGCGCATTTAGGTGGTCATTTGGCAAAATT
CAATTATAACTGACAAATCGagattcaatttgaaaaaatatttaaagatt
taAGTACTAGCGAAGGTCTAAGACCAGTTCACTTTTTATTTCAGATGGCA
TTACAAACAATTTGCATCTCAATTCTGATTCTGTTAGTCATGAACTTGAC
TTTCACGCAAAACAGACGCCTTGAAGATGAATTTTGGCAAGAGGGAGAGG
GAGATTTTCCAAGAGGAGAAACTATGATTGAAAGACTCGATGATATCACC
AACGAAGTCAGAGATATCAGGTATCATGTCTATGGCCCGTAGGAAACAAT
TTTAATTCTTAAAGGatgcaaaaattttcaagtgtGTTTGAAACCGCGAC
GAAATACTAACGTGGACATGAATATCACATCAAAAGCAAACGAAATTTAG
AAGGGAAATTCTAACACAATTCCGGTTCTTCTTAGTTCCAAAAGTGCTCG
ATGATATCTTTTATATGTAGCTGTTATAGCTATATAAAATGACTTGTAGA
TCTTGGAAATTATAGGGAAACAGTTACTTCCATACAGCTCTATAGTAACT
GTTAGGAAAACAGTTAAGGCTGTACTAAACTGAAAACATCTGATTCATTG
AAGCAAAGGTGGGGGGAATTTATCATAACGATTAGAAAACAGTTACTTTC
GCTAATTATATAATATGTTTTTGAGGACAACCGATCACAAAACTTTGATA
TGATTTGCGTCGTATCTATCAGCAAAATAatcttatttctttttcttaga
aaattctaaattttgcgCTATGGAGAGCTTTATTAGGATTCTCCTTTCAC
TTTCAGTATTCTTAGAAATGATATAACCCAACAGTCATACAAATAGAATT
GGATATCTTAAGTTGAAAGAAACTAGAAAGGACATATTGTATGGTGTACA
ATGGTGTACAATATGTCCTTCCTAGTTTCTTTCAACTTATTCTATTTGTA
TGACTTATATCAATTCTAAGAATTCTCAGACCCGCTGGGACtccttccca
ctgaaaaaattggccaaaatatcgtccccagtggaaaattatacttcaat
ttttgtccccactgaaaataatcagaaagaaaatcctcactgcaaaatct
TGTGCTATTTcttctatccccactgaattttctgactcgaaaacaatgga
attcagaTCTCAGGCATAAAAAAacataggaatatcaatccccttCGAGT
TATGGTCCGTTAtgtttacccccactggctgaaaaaatcctaccgggtct
gtgagaagggggtgctcttgtattttttttcaattattgttAATATCTTA
CAAGTAGGAGTGTGTCTTTAAGATTTTCTTAACTTCTACTTAAATTGGCT
CGTACAAATATTAAACTATCCTCCCACACACAGCTGTAAAAACTTTGCAA
GGGTttcttaaaataatattttgatactTGAGAAGATTAAGCGATACTGT
CAGGATCTAATCAAGGTGTGGTAATATTGGGTTCTCGAAAAAGACCGAAA
AGGTAATTTAGTGAATTTAGTGACAACATGGAAACTTTCACTTTCGCAGG
GAAGGGTTGAGAGATAGTCCAATAGACGAACAGTCTGATTCTTACGGAGA
TAATAGCAACGATGACGAAAACTATGGAGATAATAATGAAGAAGATAACG
ATGTAGAAGAATTGAAGAAAGATGCAATGATTAAGAAAGCCAAAAGTAAG
TATGACTCAATTTCTACACGTTCAAATTGCGCTGTGTATAATATGCCTTA
GAGGGTTTGACTTGAAAGTTTGAgttaccttattacatgaaaataGGTAC
TTAACGGCCTTGAGGTTAACACGAATAACTAGGACGATGGATAGgatatc
catcggcacgaaatttaaaaagtcaaatttttgcttcatttctTTTTGCT
GGAGAATaattaaagttgcctatctagcccttcgggctttacagatctgt
ggtgtTAAGTACGAAAGGCATGTCTTGGCCAAAGAAACAAAAGTCCGTAA
AACTAGaatgaaatttcaacctttttgaggaaaaaaaacCTAAATCCTTG
AGGTTTCTGTATGTCCTAGGCTTATTTGAGAAGATTTTCTCCGCATTCCT
GCCTATAGTTGTTGAGTACGAAGAAAATCCAGGCTAAATTACTTCCTACG
CTTTCATCGAATAATTGTTGCTATAGCAACCATCACAAACAGTGGCTAAC
GGGAAGTTTGTATTCGAATAGCATATTACATTATATGTTGAAATTAAAGT
CGATTAGATTTTCGATTTATTACATATAGTGGAAAACCTTTTAACTGAAT
TAATCTTCTAAATTTGGTTATATTGCAGGATGTTTGTTAGACTGTGATAT
CTTTAGAGAACAGGTTACGAAATGTGTCGTGTAGAAGCTAAGAAACTTTA
AATAAAGCTGCTAAAACAAATTCGctatatacaataaaaaatgaactaaa
tttgtttttaaagcaaAAGTAAGGTTCTCTTGATTTTCATTTCGTGATAT
TGGTTAAAGGATAAGAGGCTCGAATTTTTGGGAACATTTTGAAAAGGAAG
ATGCTGAtagtttgtttgttgttgtttttgggTCAATTCTTAGGTATTTT
TTTCACAActttcagattaaaaaaaaatcttacttaCTCCCGTAACAACG
TGGTAACCTCGATgtaatttactaattttctaTTGGATTTTGaataaatg
tttatttttatttcactaAATATTACCAACAGAGTAACCGGTTCACAAAG
GTTCACAAAGGTTTTCTTGCGTGTGGTACGTACTTATAATGTTgatcatg
cacttttcatttctttgtaGAGGCATCAAGCAAACACATCCAGTATGAAG
ACCCCAAACTAACGGTATGTTGTAAAGTACTTTTGCAGTCATTTGCAAAC
CATCAACCCATATGAAAATTAGTTAGGCaattcaatgaaaataaaaatgt
ttactTTTAGCAAGCGCTCTGTTATTTTAGTAGTAATACTGCATATTTTA
GTGATCTTTGAaccaagaaaaagtcaaaatctatGGTCGTGCTTGTGGTA
TTACTCTTCAGTATCCTGCCAACTAACTGAAATATTTACTCTTTTTCATT
TACCATAGAAATACAAAGCCTTTTTGATGAAACTATCACAAGTCAATGAT
TATGAAGATTTCAAGAGAACATTCAAAGTCAGAGGTAAGCCTCTAAATGA
CACCAATGTTTTCGAACTAAAAACCTCCAAATAGAAGAACTTTTGGTTAG
GCTTAGGGCCCGTTTACATGGATTTTCGGTACGGGGCGTACTGAAATTTT
TAGGTATGGTCTACGGTCTGAAGTCCCATATCGTTTACATGCTAGATTGT
TCTGAAATTTCAGTACGCCCTAACTTTCGTTTCGGTCAAAAAAACCGAGC
CGAAAGTTCAGTACGGTCCAGAAAATCCATCCGGCCTGCTATAGTACTAC
GACCACCCTGAACCAAAATCGAAAATTCAGCCCGCACCGAAACACCTTAA
TGTAAACAAGAAAGTAACTCAGATCGTACCGAAAATAAATGTAAACGGGC
CCTTATAAACAAGATACCAAAATGTTATACAACCAAAAATACATAACTAA
ACAAATCACTTCAACTAAAAGACTTAAAATGGATTTCTTTCTCCTCTTTA
GAACCAGTAACATTCAAAAGAACCAATCAGATACCAATGGGTAAGAAACG
CCGTATAATCAATCACACTTGTTGTTACTTTGTAGAATTAAAgcttgtta
aaaaaaaaagttaaatcaatGTAAGAATTGATCAAGTTTTTTAGAAGTAG
AAGTTACTTTGGACTGCAGGATAGCTCCTTCCTCGAAAAGGATATCTAAG
TATAAAGCAAAAATTATGCTCAGCTGGGGGTAAACTACTAGCTGCATGTT
TAGTCAGCTTACctgaaatttctttcttttcagcTCCAATGAAAGTACCA
GAATGCGACAAACAAGCACCGAAGCTGGTGACAATGCCGATTGACTTCAC
CTCATCCACTCACTACATCTATCCGGATTGTTTGGAAGTGAAACGATGTA
CGAATGTTGGTTGTTGTAAATTACCAAATCAAGAGTGTGGCGGtaaaaca
aaaatcaagaaGCAAGTCAGAGTTTATAAAATTGNgctactgcaggagct
tcgaaagttaaaagtgacgtcaaaaaatcgaatgtttagagcccgaaaac
ccgggctcaaaacattcgaaaaagtggcaaagtggaatagaccaAAGTGG
AATAggcgttaattgcgtaaaaaaacgcaggtgacgtctagtataggcta
cgtattgggtggaaaattttaaaagttctcagaagactctccagtggtgc
atatcatgaattagaaagattaatataacaatagcgttcagtttgaggtc
gttgttgttattgaTTATTGTAGTTTGATTATTCGCCcgatagtgtcatt
tgggcccgacgcgaagcggagggcgcaaatggcactaTCNAAAAATCAAG
AAGCAAGTCAGAGTTTATAAAATTGATCACTGTAAGTTTGCTAAATTCCC
cctaaattcatgatatgcaccactgcaatgacttcacgaatttttgcaat
ttttctgtttatgttccacccaatacgtcactttttctattattgtttaa
aagtgacgtattgggtagCGAGCACCTAACTAAAAACCGGGaattttcat
ctcgtttcttaatagcgagtttatgtattcgagataaatcgagggcgacg
gtaaaaagcaaagctgacatggagccaaaatcgccgtccactttgctcga
cgacggtaaaaacaccaagataccgtcgtctgtttaggtgagcaaaggcg
atatagagccgtacatgaactatcgactttgttttgtatcgactttactt
accgtcgccctcgatatcctccgataaaTAAACTCGGTAATNNNNNNNNN
NNNNNNNNNNNNNNNNNNagtttttttttctgacgttagtttagtctctt
cgcttcaatgcaacgacttcaatccaattccgagcgggccgcaaatgact
tTATTGCCCTATACCCGGGCCGTTAATGATATTTTAGCCCTCTGAAGCCT
GGCGTTTTAGTTTCCTTAGCGCgggtatgacaatttgagtcacaaaacct
ttcaataccgcccgccgattgaacctttaatggcttacttaatgaccgct
atatggataataatttaTAATATGCGTGCCTCTCCAATGGTTTTGAAGAA
TATAAACTAACTTGTTTgacgcaatttttcaaaaagcgtTCTTATAAAGG
TTGAGATAGATAGTCTACACAAAAGCCTGTAGGCTTTTAGGCTTGAAAAA
ACAATCTGCTATTGGGAATTGGTATCAGAGTGTATTATTTTGAAACAGAT
TTTTGAAGTTTATTACAATCTTACATTCAGCCACCCATGCTGTGGATTTC
CACACGGTGAGTTATGAAGATGATGATGTTTGTGGATGCACTTGCAAAAC
GAAAGCCGATGATTGCAAGTCTCCTCATGTCTTGGATTCAACCACTTGTA
GATGTGAATGTCCTTTGAAACCCAAAACTGATTGTGGTGTCAATAAACAG
GTAACACACGCTTTTTctaagaataattttataagaacatgacgctcatt
ttggccaaaacctaagaagaGATAAGAACAATTCctgatttcaaaaatgg
ttaagaAAATGCTTTAAGTGATTAagtaagaacatattaagaacatttaa
gcctgaaaatcacTTAAGAATTAGAACAACCGAATATCAGCCAAATTCTa
caggttcttataaaaatgtacaaTGAGAATCTATTATTTTTCTAATATTA
AAGGGCAGCCTATAGCCTATAGCCTATTTATATAGAAAAGCTCTATTTCT
CCCAGCACTGCATCAAACAATTTTATATACTGGTTCTTAATTAAAAGTTA
AGTTTTACACGTTTGCAATAACATCAATACCTTTATTTTCTCCAAGTGGT
CGTCATTTTACTGCGCATGCGTGTGCACCGACAAAAATCCAACTTGTGAT
CCAAACGAAGTATGGGACATCAACAATTGTAAGTGCGAAAAAGCTACTCC
GCCAACCTGTCCATCTGCTACCATTTTggattccaaaatttgcagatGTC
GATAATTTTAAATattgttttatgaattttataGCACCTATgaaagaaag
ttgaaaaaatacagatttatagattatttttgcttgtttgttgtaaatat
gttattttttatATCATGCGATAAAAGTTGTGTTGAAAAGgggaataatt
aaaaaattctgTTGTCCATAGTTTCCTTCTTACCAATAATATAGTTCAGA
ATATGCggcacattttttgaaatcttacaAGATATTtgactttcaatccg
gcgtttgtgtgaaaaccacgcgtaCCACGCATCtcag

Coding sequence (CDS) from alignment at scaffold_253:1068843..1076979+

>TCONS_00055444 ID=TCONS_00055444|Name=TCONS_00055444|organism=Clytia hemisphaerica|type=CDS|length=4860bp|location=Sequence derived from alignment at scaffold_253:1068843..1076979+ (Clytia hemisphaerica)
ATGGCATTACAAACAATTTGCATCTCAATTCTGATTCTGTTAGTCATGAA
CTTGACTTTCACGCAAAACAGACGCCTTGAAGATGAATTTTGGCAAGAGG
GAGAGGGAGATTTTCCAAGAGGAGAAACTATGATTGAAAGACTCGATGAT
ATCACCAACGAAGTCAGAGATATCAGGGAAGGGTTGAGAGATAGTCCAAT
AGACGAACAGTCTGATTCTTACGGAGATAATAGCAACGATGACGAAAACT
ATGGAGATAATAATGAAGAAGATAACGATGTAGAAGAATTGAAGAAAGAT
GCAATGATTAAGAAAGCCAAAAAGGCATCAAGCAAACACATCCAGTATGA
AGACCCCAAACTAACGAAATACAAAGCCTTTTTGATGAAACTATCACAAG
TCAATGATTATGAAGATTTCAAGAGAACATTCAAAGTCAGAGAACCAGTA
ACATTCAAAAGAACCAATCAGATACCAATGGcTCCAATGAAAGTACCAGA
ATGCGACAAACAAGCACCGAAGCTGGTGACAATGCCGATTGACTTCACCT
CATCCACTCACTACATCTATCCGGATTGTTTGGAAGTGAAACGATGTACG
AATGTTGGTTGTTGTAAATTACCAAATCAAGAGTGTGGCGGtaaaacaaa
aatcaagaaGCAAGTCAGAGTTTATAAAATTGNgctactgcaggagcttc
gaaagttaaaagtgacgtcaaaaaatcgaatgtttagagcccgaaaaccc
gggctcaaaacattcgaaaaagtggcaaagtggaatagaccaAAGTGGAA
TAggcgttaaATGGCATTACAAACAATTTGCATCTCAATTCTGATTCTGT
TAGTCATGAACTTGACTTTCACGCAAAACAGACGCCTTGAAGATGAATTT
TGGCAAGAGGGAGAGGGAGATTTTCCAAGAGGAGAAACTATGATTGAAAG
ACTCGATGATATCACCAACGAAGTCAGAGATATCAGGGAAGGGTTGAGAG
ATAGTCCAATAGACGAACAGTCTGATTCTTACGGAGATAATAGCAACGAT
GACGAAAACTATGGAGATAATAATGAAGAAGATAACGATGTAGAAGAATT
GAAGAAAGATGCAATGATTAAGAAAGCCAAAAAGGCATCAAGCAAACACA
TCCAGTATGAAGACCCCAAACTAACGAAATACAAAGCCTTTTTGATGAAA
CTATCACAAGTCAATGATTATGAAGATTTCAAGAGAACATTCAAAGTCAG
AGAACCAGTAACATTCAAAAGAACCAATCAGATACCAATGGcTCCAATGA
AAGTACCAGAATGCGACAAACAAGCACCGAAGCTGGTGACAATGCCGATT
GACTTCACCTCATCCACTCACTACATCTATCCGGATTGTTTGGAAGTGAA
ACGATGTACGAATGTTGGTTGTTGTAAATTACCAAATCAAGAGTGTGGCG
GtaaaacaaaaatcaagaaGCAAGTCAGAGTTTATAAAATTGNgctactg
caggagcttcgaaagttaaaagtgacgtcaaaaaatcgaatgtttagagc
ccgaaaacccgggctcaaaacattcgaaaaagtggcaaagtggaatagac
caAAGTGGAATAggcgttaaATGGCATTACAAACAATTTGCATCTCAATT
CTGATTCTGTTAGTCATGAACTTGACTTTCACGCAAAACAGACGCCTTGA
AGATGAATTTTGGCAAGAGGGAGAGGGAGATTTTCCAAGAGGAGAAACTA
TGATTGAAAGACTCGATGATATCACCAACGAAGTCAGAGATATCAGGGAA
GGGTTGAGAGATAGTCCAATAGACGAACAGTCTGATTCTTACGGAGATAA
TAGCAACGATGACGAAAACTATGGAGATAATAATGAAGAAGATAACGATG
TAGAAGAATTGAAGAAAGATGCAATGATTAAGAAAGCCAAAAAGGCATCA
AGCAAACACATCCAGTATGAAGACCCCAAACTAACGAAATACAAAGCCTT
TTTGATGAAACTATCACAAGTCAATGATTATGAAGATTTCAAGAGAACAT
TCAAAGTCAGAGAACCAGTAACATTCAAAAGAACCAATCAGATACCAATG
GcTCCAATGAAAGTACCAGAATGCGACAAACAAGCACCGAAGCTGGTGAC
AATGCCGATTGACTTCACCTCATCCACTCACTACATCTATCCGGATTGTT
TGGAAGTGAAACGATGTACGAATGTTGGTTGTTGTAAATTACCAAATCAA
GAGTGTGGCGGtaaaacaaaaatcaagaaGCAAGTCAGAGTTTATAAAAT
TGNgctactgcaggagcttcgaaagttaaaagtgacgtcaaaaaatcgaa
tgtttagagcccgaaaacccgggctcaaaacattcgaaaaagtggcaaag
tggaatagaccaAAGTGGAATAggcgttaaATGGCATTACAAACAATTTG
CATCTCAATTCTGATTCTGTTAGTCATGAACTTGACTTTCACGCAAAACA
GACGCCTTGAAGATGAATTTTGGCAAGAGGGAGAGGGAGATTTTCCAAGA
GGAGAAACTATGATTGAAAGACTCGATGATATCACCAACGAAGTCAGAGA
TATCAGGGAAGGGTTGAGAGATAGTCCAATAGACGAACAGTCTGATTCTT
ACGGAGATAATAGCAACGATGACGAAAACTATGGAGATAATAATGAAGAA
GATAACGATGTAGAAGAATTGAAGAAAGATGCAATGATTAAGAAAGCCAA
AAAGGCATCAAGCAAACACATCCAGTATGAAGACCCCAAACTAACGAAAT
ACAAAGCCTTTTTGATGAAACTATCACAAGTCAATGATTATGAAGATTTC
AAGAGAACATTCAAAGTCAGAGAACCAGTAACATTCAAAAGAACCAATCA
GATACCAATGGcTCCAATGAAAGTACCAGAATGCGACAAACAAGCACCGA
AGCTGGTGACAATGCCGATTGACTTCACCTCATCCACTCACTACATCTAT
CCGGATTGTTTGGAAGTGAAACGATGTACGAATGTTGGTTGTTGTAAATT
ACCAAATCAAGAGTGTGGCGGtaaaacaaaaatcaagaaGCAAGTCAGAG
TTTATAAAATTGNgctactgcaggagcttcgaaagttaaaagtgacgtca
aaaaatcgaatgtttagagcccgaaaacccgggctcaaaacattcgaaaa
agtggcaaagtggaatagaccaAAGTGGAATAggcgttaaATGGCATTAC
AAACAATTTGCATCTCAATTCTGATTCTGTTAGTCATGAACTTGACTTTC
ACGCAAAACAGACGCCTTGAAGATGAATTTTGGCAAGAGGGAGAGGGAGA
TTTTCCAAGAGGAGAAACTATGATTGAAAGACTCGATGATATCACCAACG
AAGTCAGAGATATCAGGGAAGGGTTGAGAGATAGTCCAATAGACGAACAG
TCTGATTCTTACGGAGATAATAGCAACGATGACGAAAACTATGGAGATAA
TAATGAAGAAGATAACGATGTAGAAGAATTGAAGAAAGATGCAATGATTA
AGAAAGCCAAAAAGGCATCAAGCAAACACATCCAGTATGAAGACCCCAAA
CTAACGAAATACAAAGCCTTTTTGATGAAACTATCACAAGTCAATGATTA
TGAAGATTTCAAGAGAACATTCAAAGTCAGAGAACCAGTAACATTCAAAA
GAACCAATCAGATACCAATGGcTCCAATGAAAGTACCAGAATGCGACAAA
CAAGCACCGAAGCTGGTGACAATGCCGATTGACTTCACCTCATCCACTCA
CTACATCTATCCGGATTGTTTGGAAGTGAAACGATGTACGAATGTTGGTT
GTTGTAAATTACCAAATCAAGAGTGTGGCGGtaaaacaaaaatcaagaaG
CAAGTCAGAGTTTATAAAATTGNgctactgcaggagcttcgaaagttaaa
agtgacgtcaaaaaatcgaatgtttagagcccgaaaacccgggctcaaaa
cattcgaaaaagtggcaaagtggaatagaccaAAGTGGAATAggcgttaa
ATGGCATTACAAACAATTTGCATCTCAATTCTGATTCTGTTAGTCATGAA
CTTGACTTTCACGCAAAACAGACGCCTTGAAGATGAATTTTGGCAAGAGG
GAGAGGGAGATTTTCCAAGAGGAGAAACTATGATTGAAAGACTCGATGAT
ATCACCAACGAAGTCAGAGATATCAGGGAAGGGTTGAGAGATAGTCCAAT
AGACGAACAGTCTGATTCTTACGGAGATAATAGCAACGATGACGAAAACT
ATGGAGATAATAATGAAGAAGATAACGATGTAGAAGAATTGAAGAAAGAT
GCAATGATTAAGAAAGCCAAAAAGGCATCAAGCAAACACATCCAGTATGA
AGACCCCAAACTAACGAAATACAAAGCCTTTTTGATGAAACTATCACAAG
TCAATGATTATGAAGATTTCAAGAGAACATTCAAAGTCAGAGAACCAGTA
ACATTCAAAAGAACCAATCAGATACCAATGGcTCCAATGAAAGTACCAGA
ATGCGACAAACAAGCACCGAAGCTGGTGACAATGCCGATTGACTTCACCT
CATCCACTCACTACATCTATCCGGATTGTTTGGAAGTGAAACGATGTACG
AATGTTGGTTGTTGTAAATTACCAAATCAAGAGTGTGGCGGtaaaacaaa
aatcaagaaGCAAGTCAGAGTTTATAAAATTGNgctactgcaggagcttc
gaaagttaaaagtgacgtcaaaaaatcgaatgtttagagcccgaaaaccc
gggctcaaaacattcgaaaaagtggcaaagtggaatagaccaAAGTGGAA
TAggcgttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034890XLOC_034890Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055444-proteinTCONS_00055444-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055444-exon-scaffold_253-1491911889:1068843..1069127TCONS_00055444-exon-scaffold_253-1491911889:1068843..1069127Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1510915933:1068843..1069127TCONS_00055444-exon-scaffold_253-1510915933:1068843..1069127Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1575043694:1068843..1069127TCONS_00055444-exon-scaffold_253-1575043694:1068843..1069127Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1491911889:1070637..1070812TCONS_00055444-exon-scaffold_253-1491911889:1070637..1070812Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1510915933:1070637..1070812TCONS_00055444-exon-scaffold_253-1510915933:1070637..1070812Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1575043694:1070637..1070812TCONS_00055444-exon-scaffold_253-1575043694:1070637..1070812Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1491911889:1072092..1072237TCONS_00055444-exon-scaffold_253-1491911889:1072092..1072237Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1510915933:1072092..1072237TCONS_00055444-exon-scaffold_253-1510915933:1072092..1072237Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1575043694:1072092..1072237TCONS_00055444-exon-scaffold_253-1575043694:1072092..1072237Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1491911889:1073363..1073406TCONS_00055444-exon-scaffold_253-1491911889:1073363..1073406Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1510915933:1073363..1073406TCONS_00055444-exon-scaffold_253-1510915933:1073363..1073406Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1575043694:1073363..1073406TCONS_00055444-exon-scaffold_253-1575043694:1073363..1073406Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1491911889:1073651..1073726TCONS_00055444-exon-scaffold_253-1491911889:1073651..1073726Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1510915933:1073651..1073726TCONS_00055444-exon-scaffold_253-1510915933:1073651..1073726Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1575043694:1073651..1073726TCONS_00055444-exon-scaffold_253-1575043694:1073651..1073726Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1491911889:1074194..1074232TCONS_00055444-exon-scaffold_253-1491911889:1074194..1074232Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1510915933:1074194..1074232TCONS_00055444-exon-scaffold_253-1510915933:1074194..1074232Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1575043694:1074194..1074232TCONS_00055444-exon-scaffold_253-1575043694:1074194..1074232Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1491911889:1074476..1075073TCONS_00055444-exon-scaffold_253-1491911889:1074476..1075073Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1510915933:1074476..1075073TCONS_00055444-exon-scaffold_253-1510915933:1074476..1075073Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1575043694:1074476..1075073TCONS_00055444-exon-scaffold_253-1575043694:1074476..1075073Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1491911889:1075973..1076142TCONS_00055444-exon-scaffold_253-1491911889:1075973..1076142Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1510915933:1075973..1076142TCONS_00055444-exon-scaffold_253-1510915933:1075973..1076142Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1575043694:1075973..1076142TCONS_00055444-exon-scaffold_253-1575043694:1075973..1076142Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1491911889:1076539..1076979TCONS_00055444-exon-scaffold_253-1491911889:1076539..1076979Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1510915933:1076539..1076979TCONS_00055444-exon-scaffold_253-1510915933:1076539..1076979Clytia hemisphaericaexon
TCONS_00055444-exon-scaffold_253-1575043694:1076539..1076979TCONS_00055444-exon-scaffold_253-1575043694:1076539..1076979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1068843..1076979 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66083	1.68706	0.752242	0.809546	38.7268	27.6661	42.8463	43.3883	16.8539	37.3526	21.5519	14.1421	21.5927	13.5891	14.7173	25.5074	32.8112	9.55683	15.6387	27.9661	16.425	16.3061	20.304	25.0368	40.3915	43.2123	228.065	226.222	11.0617	12.4256
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029034Cystine-knot_cytokine
IPR000072PDGF/VEGF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0008083 growth factor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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