TCONS_00055445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055445
Unique NameTCONS_00055445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055445 ID=TCONS_00055445|Name=TCONS_00055445|organism=Clytia hemisphaerica|type=transcript|length=513bp
CTCGAATTTTTGGGAACATTTTGAAAAGGAAGATGCTGAtagtttgtttg
ttgttgtttttggAGGCATCAAGCAAACACATCCAGTATGAAGACCCCAA
ACTAACGAAATACAAAGCCTTTTTGATGAAACTATCACAAGTCAATGATT
ATGAAGATTTCAAGAGAACATTCAAAGTCAGAGAACCAGTAACATTCAAA
AGAACCAATCAGATACCAATGGcTCCAATGAAAGTACCAGAATGCGACAA
ACAAGCACCGAAGCTGGTGACAATGCCGATTGACTTCACCTCATCCACTC
ACTACATCTATCCGGATTGTTTGGAAGTGAAACGATGTACGAATGTTGGT
TGTTGTAAATTACCAAATCAAGAGTGTGGCGGtaaaacaaaaatcaagaa
GCAAGTCAGAGTTTATAAAATTGNgctactgcaggagcttcgaaagttaa
aagtgacgtcaaaaaatcgaatgtttagagcccgaaaacccgggctcaaa
acattcgaaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_253:1073061..1074766+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055445 ID=TCONS_00055445|Name=TCONS_00055445|organism=Clytia hemisphaerica|type=transcript|length=1706bp|location=Sequence derived from alignment at scaffold_253:1073061..1074766+ (Clytia hemisphaerica)
CTCGAATTTTTGGGAACATTTTGAAAAGGAAGATGCTGAtagtttgtttg
ttgttgtttttgggTCAATTCTTAGGTATTTTTTTCACAActttcagatt
aaaaaaaaatcttacttaCTCCCGTAACAACGTGGTAACCTCGATgtaat
ttactaattttctaTTGGATTTTGaataaatgtttatttttatttcacta
AATATTACCAACAGAGTAACCGGTTCACAAAGGTTCACAAAGGTTTTCTT
GCGTGTGGTACGTACTTATAATGTTgatcatgcacttttcatttctttgt
aGAGGCATCAAGCAAACACATCCAGTATGAAGACCCCAAACTAACGGTAT
GTTGTAAAGTACTTTTGCAGTCATTTGCAAACCATCAACCCATATGAAAA
TTAGTTAGGCaattcaatgaaaataaaaatgtttactTTTAGCAAGCGCT
CTGTTATTTTAGTAGTAATACTGCATATTTTAGTGATCTTTGAaccaaga
aaaagtcaaaatctatGGTCGTGCTTGTGGTATTACTCTTCAGTATCCTG
CCAACTAACTGAAATATTTACTCTTTTTCATTTACCATAGAAATACAAAG
CCTTTTTGATGAAACTATCACAAGTCAATGATTATGAAGATTTCAAGAGA
ACATTCAAAGTCAGAGGTAAGCCTCTAAATGACACCAATGTTTTCGAACT
AAAAACCTCCAAATAGAAGAACTTTTGGTTAGGCTTAGGGCCCGTTTACA
TGGATTTTCGGTACGGGGCGTACTGAAATTTTTAGGTATGGTCTACGGTC
TGAAGTCCCATATCGTTTACATGCTAGATTGTTCTGAAATTTCAGTACGC
CCTAACTTTCGTTTCGGTCAAAAAAACCGAGCCGAAAGTTCAGTACGGTC
CAGAAAATCCATCCGGCCTGCTATAGTACTACGACCACCCTGAACCAAAA
TCGAAAATTCAGCCCGCACCGAAACACCTTAATGTAAACAAGAAAGTAAC
TCAGATCGTACCGAAAATAAATGTAAACGGGCCCTTATAAACAAGATACC
AAAATGTTATACAACCAAAAATACATAACTAAACAAATCACTTCAACTAA
AAGACTTAAAATGGATTTCTTTCTCCTCTTTAGAACCAGTAACATTCAAA
AGAACCAATCAGATACCAATGGGTAAGAAACGCCGTATAATCAATCACAC
TTGTTGTTACTTTGTAGAATTAAAgcttgttaaaaaaaaaagttaaatca
atGTAAGAATTGATCAAGTTTTTTAGAAGTAGAAGTTACTTTGGACTGCA
GGATAGCTCCTTCCTCGAAAAGGATATCTAAGTATAAAGCAAAAATTATG
CTCAGCTGGGGGTAAACTACTAGCTGCATGTTTAGTCAGCTTACctgaaa
tttctttcttttcagcTCCAATGAAAGTACCAGAATGCGACAAACAAGCA
CCGAAGCTGGTGACAATGCCGATTGACTTCACCTCATCCACTCACTACAT
CTATCCGGATTGTTTGGAAGTGAAACGATGTACGAATGTTGGTTGTTGTA
AATTACCAAATCAAGAGTGTGGCGGtaaaacaaaaatcaagaaGCAAGTC
AGAGTTTATAAAATTGNgctactgcaggagcttcgaaagttaaaagtgac
gtcaaaaaatcgaatgtttagagcccgaaaacccgggctcaaaacattcg
aaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034890XLOC_034890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055445-exon-scaffold_253-1491911889:1073061..1073123TCONS_00055445-exon-scaffold_253-1491911889:1073061..1073123Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1510915933:1073061..1073123TCONS_00055445-exon-scaffold_253-1510915933:1073061..1073123Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1575043694:1073061..1073123TCONS_00055445-exon-scaffold_253-1575043694:1073061..1073123Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1491911889:1073363..1073406TCONS_00055445-exon-scaffold_253-1491911889:1073363..1073406Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1510915933:1073363..1073406TCONS_00055445-exon-scaffold_253-1510915933:1073363..1073406Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1575043694:1073363..1073406TCONS_00055445-exon-scaffold_253-1575043694:1073363..1073406Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1491911889:1073651..1073726TCONS_00055445-exon-scaffold_253-1491911889:1073651..1073726Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1510915933:1073651..1073726TCONS_00055445-exon-scaffold_253-1510915933:1073651..1073726Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1575043694:1073651..1073726TCONS_00055445-exon-scaffold_253-1575043694:1073651..1073726Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1491911889:1074194..1074232TCONS_00055445-exon-scaffold_253-1491911889:1074194..1074232Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1510915933:1074194..1074232TCONS_00055445-exon-scaffold_253-1510915933:1074194..1074232Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1575043694:1074194..1074232TCONS_00055445-exon-scaffold_253-1575043694:1074194..1074232Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1491911889:1074476..1074766TCONS_00055445-exon-scaffold_253-1491911889:1074476..1074766Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1510915933:1074476..1074766TCONS_00055445-exon-scaffold_253-1510915933:1074476..1074766Clytia hemisphaericaexon
TCONS_00055445-exon-scaffold_253-1575043694:1074476..1074766TCONS_00055445-exon-scaffold_253-1575043694:1074476..1074766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1073061..1074766 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69787	2.00129	0.789521	0.791008	20.7024	12.0466	23.0637	19.4678	9.23592	28.2479	12.3281	8.73847	33.0633	21.3496	15.4733	29.4467	27.2537	10.561	56.3565	61.9251	35.3426	39.6509	27.5722	42.5903	36.1902	37.3584	136.744	127.633	11.0972	12.5061
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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