TCONS_00055446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055446
Unique NameTCONS_00055446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055446 ID=TCONS_00055446|Name=TCONS_00055446|organism=Clytia hemisphaerica|type=transcript|length=1441bp
CGAATTTTTGGGAACATTTTGAAAAGGAAGATGCTGAtagtttgtttgtt
gttgtttttgggTCAATTCTTAGAGGCATCAAGCAAACACATCCAGTATG
AAGACCCCAAACTAACGAAATACAAAGCCTTTTTGATGAAACTATCACAA
GTCAATGATTATGAAGATTTCAAGAGAACATTCAAAGTCAGAGAACCAGT
AACATTCAAAAGAACCAATCAGATACCAATGGcTCCAATGAAAGTACCAG
AATGCGACAAACAAGCACCGAAGCTGGTGACAATGCCGATTGACTTCACC
TCATCCACTCACTACATCTATCCGGATTGTTTGGAAGTGAAACGATGTAC
GAATGTTGGTTGTTGTAAATTACCAAATCAAGAGTGTGGCGGtaaaacaa
aaatcaagaaGCAAGTCAGAGTTTATAAAATTGNgctactgcaggagctt
cgaaagttaaaagtgacgtcaaaaaatcgaatgtttagagcccgaaaacc
cgggctcaaaacattcgaaaaagtggcaaagtggaatagaccaAAGTGGA
ATAggcgttaattgcgtaaaaaaacgcaggtgacgtctagtataggctac
gtattgggtggaaaattttaaaagttctcagaagactctccagtggtgca
tatcatgaattagaaagattaatataacaatagcgttcagtttgaggtcg
ttgttgttattgaTTATTGTAGTTTGATTATTCGCCcgatagtgtcattt
gggcccgacgcgaagcggagggcgcaaatggcactaTCNAAAAATCAAGA
AGCAAGTCAGAGTTTATAAAATTGATCACTCCACCCATGCTGTGGATTTC
CACACGGTGAGTTATGAAGATGATGATGTTTGTGGATGCACTTGCAAAAC
GAAAGCCGATGATTGCAAGTCTCCTCATGTCTTGGATTCAACCACTTGTA
GATGTGAATGTCCTTTGAAACCCAAAACTGATTGTGGTGTCAATAAACAG
TGGTCGTCATTTTACTGCGCATGCGTGTGCACCGACAAAAATCCAACTTG
TGATCCAAACGAAGTATGGGACATCAACAATTGTAAGTGCGAAAAAGCTA
CTCCGCCAACCTGTCCATCTGCTACCATTTTggattccaaaatttgcaga
tGTCGATAATTTTAAATattgttttatgaattttataGCACCTATgaaag
aaagttgaaaaaatacagatttatagattatttttgcttgtttgttgtaa
atatgttattttttatATCATGCGATAAAAGTTGTGTTGAAAAGgggaat
aattaaaaaattctgTTGTCCATAGTTTCCTTCTTACCAATAATATAGTT
CAGAATATGCggcacattttttgaaatcttacaAGATATTtgactttcaa
tccggcgtttgtgtgaaaaccacgcgtaCCACGCATCtcag
Run BLAST on NCBI

transcript from alignment at scaffold_253:1073063..1076979+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055446 ID=TCONS_00055446|Name=TCONS_00055446|organism=Clytia hemisphaerica|type=transcript|length=3917bp|location=Sequence derived from alignment at scaffold_253:1073063..1076979+ (Clytia hemisphaerica)
CGAATTTTTGGGAACATTTTGAAAAGGAAGATGCTGAtagtttgtttgtt
gttgtttttgggTCAATTCTTAGGTATTTTTTTCACAActttcagattaa
aaaaaaatcttacttaCTCCCGTAACAACGTGGTAACCTCGATgtaattt
actaattttctaTTGGATTTTGaataaatgtttatttttatttcactaAA
TATTACCAACAGAGTAACCGGTTCACAAAGGTTCACAAAGGTTTTCTTGC
GTGTGGTACGTACTTATAATGTTgatcatgcacttttcatttctttgtaG
AGGCATCAAGCAAACACATCCAGTATGAAGACCCCAAACTAACGGTATGT
TGTAAAGTACTTTTGCAGTCATTTGCAAACCATCAACCCATATGAAAATT
AGTTAGGCaattcaatgaaaataaaaatgtttactTTTAGCAAGCGCTCT
GTTATTTTAGTAGTAATACTGCATATTTTAGTGATCTTTGAaccaagaaa
aagtcaaaatctatGGTCGTGCTTGTGGTATTACTCTTCAGTATCCTGCC
AACTAACTGAAATATTTACTCTTTTTCATTTACCATAGAAATACAAAGCC
TTTTTGATGAAACTATCACAAGTCAATGATTATGAAGATTTCAAGAGAAC
ATTCAAAGTCAGAGGTAAGCCTCTAAATGACACCAATGTTTTCGAACTAA
AAACCTCCAAATAGAAGAACTTTTGGTTAGGCTTAGGGCCCGTTTACATG
GATTTTCGGTACGGGGCGTACTGAAATTTTTAGGTATGGTCTACGGTCTG
AAGTCCCATATCGTTTACATGCTAGATTGTTCTGAAATTTCAGTACGCCC
TAACTTTCGTTTCGGTCAAAAAAACCGAGCCGAAAGTTCAGTACGGTCCA
GAAAATCCATCCGGCCTGCTATAGTACTACGACCACCCTGAACCAAAATC
GAAAATTCAGCCCGCACCGAAACACCTTAATGTAAACAAGAAAGTAACTC
AGATCGTACCGAAAATAAATGTAAACGGGCCCTTATAAACAAGATACCAA
AATGTTATACAACCAAAAATACATAACTAAACAAATCACTTCAACTAAAA
GACTTAAAATGGATTTCTTTCTCCTCTTTAGAACCAGTAACATTCAAAAG
AACCAATCAGATACCAATGGGTAAGAAACGCCGTATAATCAATCACACTT
GTTGTTACTTTGTAGAATTAAAgcttgttaaaaaaaaaagttaaatcaat
GTAAGAATTGATCAAGTTTTTTAGAAGTAGAAGTTACTTTGGACTGCAGG
ATAGCTCCTTCCTCGAAAAGGATATCTAAGTATAAAGCAAAAATTATGCT
CAGCTGGGGGTAAACTACTAGCTGCATGTTTAGTCAGCTTACctgaaatt
tctttcttttcagcTCCAATGAAAGTACCAGAATGCGACAAACAAGCACC
GAAGCTGGTGACAATGCCGATTGACTTCACCTCATCCACTCACTACATCT
ATCCGGATTGTTTGGAAGTGAAACGATGTACGAATGTTGGTTGTTGTAAA
TTACCAAATCAAGAGTGTGGCGGtaaaacaaaaatcaagaaGCAAGTCAG
AGTTTATAAAATTGNgctactgcaggagcttcgaaagttaaaagtgacgt
caaaaaatcgaatgtttagagcccgaaaacccgggctcaaaacattcgaa
aaagtggcaaagtggaatagaccaAAGTGGAATAggcgttaattgcgtaa
aaaaacgcaggtgacgtctagtataggctacgtattgggtggaaaatttt
aaaagttctcagaagactctccagtggtgcatatcatgaattagaaagat
taatataacaatagcgttcagtttgaggtcgttgttgttattgaTTATTG
TAGTTTGATTATTCGCCcgatagtgtcatttgggcccgacgcgaagcgga
gggcgcaaatggcactaTCNAAAAATCAAGAAGCAAGTCAGAGTTTATAA
AATTGATCACTGTAAGTTTGCTAAATTCCCcctaaattcatgatatgcac
cactgcaatgacttcacgaatttttgcaatttttctgtttatgttccacc
caatacgtcactttttctattattgtttaaaagtgacgtattgggtagCG
AGCACCTAACTAAAAACCGGGaattttcatctcgtttcttaatagcgagt
ttatgtattcgagataaatcgagggcgacggtaaaaagcaaagctgacat
ggagccaaaatcgccgtccactttgctcgacgacggtaaaaacaccaaga
taccgtcgtctgtttaggtgagcaaaggcgatatagagccgtacatgaac
tatcgactttgttttgtatcgactttacttaccgtcgccctcgatatcct
ccgataaaTAAACTCGGTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNag
tttttttttctgacgttagtttagtctcttcgcttcaatgcaacgacttc
aatccaattccgagcgggccgcaaatgacttTATTGCCCTATACCCGGGC
CGTTAATGATATTTTAGCCCTCTGAAGCCTGGCGTTTTAGTTTCCTTAGC
GCgggtatgacaatttgagtcacaaaacctttcaataccgcccgccgatt
gaacctttaatggcttacttaatgaccgctatatggataataatttaTAA
TATGCGTGCCTCTCCAATGGTTTTGAAGAATATAAACTAACTTGTTTgac
gcaatttttcaaaaagcgtTCTTATAAAGGTTGAGATAGATAGTCTACAC
AAAAGCCTGTAGGCTTTTAGGCTTGAAAAAACAATCTGCTATTGGGAATT
GGTATCAGAGTGTATTATTTTGAAACAGATTTTTGAAGTTTATTACAATC
TTACATTCAGCCACCCATGCTGTGGATTTCCACACGGTGAGTTATGAAGA
TGATGATGTTTGTGGATGCACTTGCAAAACGAAAGCCGATGATTGCAAGT
CTCCTCATGTCTTGGATTCAACCACTTGTAGATGTGAATGTCCTTTGAAA
CCCAAAACTGATTGTGGTGTCAATAAACAGGTAACACACGCTTTTTctaa
gaataattttataagaacatgacgctcattttggccaaaacctaagaaga
GATAAGAACAATTCctgatttcaaaaatggttaagaAAATGCTTTAAGTG
ATTAagtaagaacatattaagaacatttaagcctgaaaatcacTTAAGAA
TTAGAACAACCGAATATCAGCCAAATTCTacaggttcttataaaaatgta
caaTGAGAATCTATTATTTTTCTAATATTAAAGGGCAGCCTATAGCCTAT
AGCCTATTTATATAGAAAAGCTCTATTTCTCCCAGCACTGCATCAAACAA
TTTTATATACTGGTTCTTAATTAAAAGTTAAGTTTTACACGTTTGCAATA
ACATCAATACCTTTATTTTCTCCAAGTGGTCGTCATTTTACTGCGCATGC
GTGTGCACCGACAAAAATCCAACTTGTGATCCAAACGAAGTATGGGACAT
CAACAATTGTAAGTGCGAAAAAGCTACTCCGCCAACCTGTCCATCTGCTA
CCATTTTggattccaaaatttgcagatGTCGATAATTTTAAATattgttt
tatgaattttataGCACCTATgaaagaaagttgaaaaaatacagatttat
agattatttttgcttgtttgttgtaaatatgttattttttatATCATGCG
ATAAAAGTTGTGTTGAAAAGgggaataattaaaaaattctgTTGTCCATA
GTTTCCTTCTTACCAATAATATAGTTCAGAATATGCggcacattttttga
aatcttacaAGATATTtgactttcaatccggcgtttgtgtgaaaaccacg
cgtaCCACGCATCtcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034890XLOC_034890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055446-exon-scaffold_253-1491911889:1073063..1073135TCONS_00055446-exon-scaffold_253-1491911889:1073063..1073135Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1510915933:1073063..1073135TCONS_00055446-exon-scaffold_253-1510915933:1073063..1073135Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1575043694:1073063..1073135TCONS_00055446-exon-scaffold_253-1575043694:1073063..1073135Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1491911889:1073363..1073406TCONS_00055446-exon-scaffold_253-1491911889:1073363..1073406Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1510915933:1073363..1073406TCONS_00055446-exon-scaffold_253-1510915933:1073363..1073406Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1575043694:1073363..1073406TCONS_00055446-exon-scaffold_253-1575043694:1073363..1073406Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1491911889:1073651..1073726TCONS_00055446-exon-scaffold_253-1491911889:1073651..1073726Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1510915933:1073651..1073726TCONS_00055446-exon-scaffold_253-1510915933:1073651..1073726Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1575043694:1073651..1073726TCONS_00055446-exon-scaffold_253-1575043694:1073651..1073726Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1491911889:1074194..1074232TCONS_00055446-exon-scaffold_253-1491911889:1074194..1074232Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1510915933:1074194..1074232TCONS_00055446-exon-scaffold_253-1510915933:1074194..1074232Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1575043694:1074194..1074232TCONS_00055446-exon-scaffold_253-1575043694:1074194..1074232Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1491911889:1074476..1075073TCONS_00055446-exon-scaffold_253-1491911889:1074476..1075073Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1510915933:1074476..1075073TCONS_00055446-exon-scaffold_253-1510915933:1074476..1075073Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1575043694:1074476..1075073TCONS_00055446-exon-scaffold_253-1575043694:1074476..1075073Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1491911889:1075973..1076142TCONS_00055446-exon-scaffold_253-1491911889:1075973..1076142Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1510915933:1075973..1076142TCONS_00055446-exon-scaffold_253-1510915933:1075973..1076142Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1575043694:1075973..1076142TCONS_00055446-exon-scaffold_253-1575043694:1075973..1076142Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1491911889:1076539..1076979TCONS_00055446-exon-scaffold_253-1491911889:1076539..1076979Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1510915933:1076539..1076979TCONS_00055446-exon-scaffold_253-1510915933:1076539..1076979Clytia hemisphaericaexon
TCONS_00055446-exon-scaffold_253-1575043694:1076539..1076979TCONS_00055446-exon-scaffold_253-1575043694:1076539..1076979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1073063..1076979 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0228636	0	0.611031	1.03116	0	0.129746	0	0	0	0.511427	0.840719	0.18042	8.05539	8.19911	5.65928	4.62851	2.34326	4.01405	35.4377	30.0572	13.7132	14.1098	6.21826	11.8598	0	0	0.552589	0.24692	2.74144	1.06655
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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