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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055461 ID=TCONS_00055461|Name=TCONS_00055461|organism=Clytia hemisphaerica|type=transcript|length=3057bp
TTCTTTGACGGTATATTGAATAGAGCCATCGAGACTATTTGCATAACTTT
ACGGTAACCGATTAATCATAACAAAGCCAcgtaaatttttttcgaaagca
CATTGCACCAAAATCTTACATTTTTAACTGATTTGCCGCTGATCGTCTGT
CACTGATATTTTTCCACTGTCAATTCAGGTGAACATCACATCATGAGTGA
CAATGAGAGCGATGATGAATTTCTCAGTGCTGATGAGGGAGAATATGAAG
ATGGAAAGGGAAAAACCTCAATTGATGAAGATGAAGTGGACGAGATTATG
GACTTATTGATGAACAAAGaacaaatttcaaacaaaaatgaaagtttgcT
TTCAGCTAATCCCACtgcaaagaagaaaaattcatcaATTAATGAAACAA
CAACAAATTCAATTAAAAAGCAAGAAGAACCATCAAATGATCAAATAACT
AaagacgaaaataaaaaattgaaaattggggAAGAGAATCAAGAAATTAA
ATCAGCTGAAAGTAATGAATTGAGAAAGAAATTCATGCCAGAAAATGAGA
GACCTCTTGAAGTGAGCAGtgataaagatgaaaatgaaactgAAGAACCT
CCATTAGAAAGCTTGGAAGATATGATTGAAGAGTCTTTGAAAGATGAATC
AAAGACAAACACTGAAAACCAAATTGAAGACACTAAGGAAAATCATGATC
AACTTATAGAGCAGAATGAGGTTGAAGTTGATAATCAAGAATCACCAATC
ATAATGGAAGTTCTGTCTGAGAACAATAAAGAGATTGAATCTTTGGAAAT
TGTCGATGAAAACCAAGCTGGGCAACAAGAATCTtcaaaagaagaaacaa
aaccAAAACAGCCAAATGAACTATCTAGTTTGAAATCCAACGTTAAAGTT
ACTACTGATTCCGATACTATAGAGAAAAATGAGGATTCAACTAGCAGCGA
TAAAAATGTCAAGGAAATTCCTGTAGTTAAGTCTGAAACTAGCATTGAAA
ATGAAGTGGAAAATACCAGACATGACCTTGATGACCTTGATCTGGATGAT
GATTCTGATGaggaagaaaatttaaacaaacCTTGTGAAAATGTTTCTGA
AAATGTTACAGAGGAAGTGCAAGAACAGCCTGTAGCTCAAGATTTGCCTG
TCAAAGAAGTTGAAAATGAGTGTAATGAGTCTACCACTGAAAATGTATTA
AATGAAGATACCCCTACAATTCCTGAGAGTGAGACAAAGGAATGTACTGA
AAGTCAAACAAATGATTCTTGTGATTCCGGAATCTCTGTTGCAAATGATG
ATATTCCGAACTTGGAGAAAAACAAGCAGCTCTCTGGGGAAGATGAAACA
GAATCATCAACACCAACGAGTGAGGATAAACCATGCACTCCTGAAAACGA
TTCTGAAACGCAGGAAGAAACAGAGCCTGAAGGTGTTGACAGCTTTGATG
AAGGAAATGAATGGGGTGATTGGGGAAATGAGGAAATTGAAGTAGAAAAT
AAAAGtgtcaatcaaaacaatgaaaaatctAGCAAGTCGGTCTCTGAAAA
GCCACAAACTCAACCTGAGCCTCCAAAGCAAACGCAACAAAGCCAAGCAG
CTTCTCAACCACACGGAGACTGGGGATGGGATTCATGGGCAGATGATTTT
CTCATACAAGCAGCAGGAAAAGTTAGCAACATGTTGGAATCTGTTGAGGA
TCAACTTGGTATTCCTGATCCTACAAAAATGGCTCATGTTGTTTCTAAAG
AGGAACGGTTATCCCCAAAGCATTCCCCAGCTCACAAAAACAAGGACAAA
GTAAAATCTGTAGAAGTTCCAAAGACCAAAGAAGAACCGCCTGTtcctca
acaacaacaacaacaacaacaaacaccGGCAGCGCCAACAGGTGGTTCAT
CCTGGTTTGGTGGCTTTGGTGCATCACTATCTGGTCTTGTTCAAAACACC
AGTACTGATCTTGTTACTGGAGGTATTGGTGCCTTAGAATTTATTGGAAA
GAAAACAGTTGATATGTTATCAGATGGTGACCCTGGTTTACGTCAAGCAA
GAGACACGATAGCtggcaaaaagaaaacaaacctCTCAGCATTGCTACAA
GAAGCTAAAGAAACATCAGAGAAAAATCCAAGTACACGTGCAAAGACTTC
TGACGAAATGAACTTTAATgattattttgagaaattccaagGCAATATAA
ACTTGGATGCTTTAGAAATGTTATCAAATGAGTGCGATAATAAACTTGAA
CGGATTTTGCGCTTACAATCACATGAAGCAAAACAGGAGACCGAAGAAGT
CCTCGCAGAGACGCAAGAGAAATTTTCACTTCCTGAAGATATCGAGGAAA
GCCAATTCAACTCAGATTTCAAGAAAGATTTATTTGCAACCACAAAAcag
ttgaaaatgaaagtaacatGTTCCAAACTCTTAAACACGTGGACCAAACT
GAAAGAGAAGTCTAAAAATACAGCCACTGAACCTAAAGAGTGCTTCAATA
ATACGATATCTGGTTTAGCAGAACTAACCTCAAAGTGTGTTGAATTTTAT
CGGAAAGTAGCTGATATGTTTTTAGCTACAGACATGCAAGCCAGGGACCT
TGCTTTACAAAGGGCATCAGCTTTACAATCCATATCGGTCATGTTTTTGA
TTGAGTTGACTCAACTGACAAATAATTTTGCACAACAAATAGCTGATAAT
GTCGATCCACAAAAGATTGTCACGGACATTTATTTGGAAGGCTCTAATTG
CAGCTCTATTGTCAGAGATTGTCATGATTTGGTACTGCCTATACTTCAAT
GTTGTATtgtgaaatgagtttattttaaatttattattattaataacTCT
CTTTTCAAGGGTCCAGCTGTTACTTatcacattttgaaaatttgcttttc
ACTCTGGCCCTTCATGAAAGGTTTTGATTGCATGGTCGTTTTTTTAATac
ctccaaaaattttgaattcctGTTCCTTGTGACAAAATTCATTATCTTTC
AGgttcaaattattttctcaaatatttattACCCAATCCGATCTAAATTT
CTGTTGT Run BLAST on NCBI protein sequence of TCONS_00055461-protein >TCONS_00055461-protein ID=TCONS_00055461-protein|Name=TCONS_00055461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=874bp
MSDNESDDEFLSADEGEYEDGKGKTSIDEDEVDEIMDLLMNKEQISNKNE
SLLSANPTAKKKNSSINETTTNSIKKQEEPSNDQITKDENKKLKIGEENQ
EIKSAESNELRKKFMPENERPLEVSSDKDENETEEPPLESLEDMIEESLK
DESKTNTENQIEDTKENHDQLIEQNEVEVDNQESPIIMEVLSENNKEIES
LEIVDENQAGQQESSKEETKPKQPNELSSLKSNVKVTTDSDTIEKNEDST
SSDKNVKEIPVVKSETSIENEVENTRHDLDDLDLDDDSDEEENLNKPCEN
VSENVTEEVQEQPVAQDLPVKEVENECNESTTENVLNEDTPTIPESETKE
CTESQTNDSCDSGISVANDDIPNLEKNKQLSGEDETESSTPTSEDKPCTP
ENDSETQEETEPEGVDSFDEGNEWGDWGNEEIEVENKSVNQNNEKSSKSV
SEKPQTQPEPPKQTQQSQAASQPHGDWGWDSWADDFLIQAAGKVSNMLES
VEDQLGIPDPTKMAHVVSKEERLSPKHSPAHKNKDKVKSVEVPKTKEEPP
VPQQQQQQQQTPAAPTGGSSWFGGFGASLSGLVQNTSTDLVTGGIGALEF
IGKKTVDMLSDGDPGLRQARDTIAGKKKTNLSALLQEAKETSEKNPSTRA
KTSDEMNFNDYFEKFQGNINLDALEMLSNECDNKLERILRLQSHEAKQET
EEVLAETQEKFSLPEDIEESQFNSDFKKDLFATTKQLKMKVTCSKLLNTW
TKLKEKSKNTATEPKECFNNTISGLAELTSKCVEFYRKVADMFLATDMQA
RDLALQRASALQSISVMFLIELTQLTNNFAQQIADNVDPQKIVTDIYLEG
SNCSSIVRDCHDLVLPILQCCIVK Run BLAST on NCBI transcript from alignment at scaffold_253:1278434..1285471+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055461 ID=TCONS_00055461|Name=TCONS_00055461|organism=Clytia hemisphaerica|type=transcript|length=7038bp|location=Sequence derived from alignment at scaffold_253:1278434..1285471+ (Clytia hemisphaerica)
TTCTTTGACGGTATATTGAATAGAGCCATCGAGACTATTTGCATAACTTT
ACGGTAACCGATTAATCATAACAAAGCCAcgtaaatttttttcgaaagca
CATTGCACCAAAATCTTACATTTTTAACTGATTTGCCGCTGATCGTCTGT
CACTGATATTTTTCCACTGTCAATTCAGGTAATAGTTTTCATATATTCAC
TATAAAGTAGTTAGGAATATAAGGTAAGGGATTGTGGTACtagtataaga
attgcgaagtaATCCAAAAACTATGTGTGCAAAGTTTTTTGCAATCAAAA
GTTTTACACAGTTTTACGAGGCGACTAACTTTCAATTCACAAATCCATGA
TATTTTagataccgtgagattgggtaacttgcatctgtggaggctaacat
gcatagccctcaaatgaaataCCTGGCTGGtcactaaaatagaaaaataa
atcaaaacaagaatggtagagtagagctgcgagcggagctgcgtagttgt
attttaatgaccagccaggtcattcatttgagggcttgcttatgcatgtt
agcctccactgatgcaagttacccgatctcacggtactgCATTTTGAAGA
AACAGGGATGGTTAAAATTTTTGCCTTCCATGCCAGCACACAACACACTT
GGTGTACTGTATCAGATATCTTTGTCAATTTCAATGTGTTTAATTTGTAA
TTAGAGTAGAGCCTTATGACAGGAGGCTTTAGCTCTGTagagctctaaaa
cagcatctataaaacatgaaaattggaatatgatttttcaatagaccttt
tcgcctttccatccgccatcttgaattgtatgcaaaaatagaggaacgaa
aaagccttggttggatttagttggaaagtatgcaaaacatatgcaagttt
acacaaagattaaaaagacaacaaagcatcttcaaagaaatattataatc
attagaacaataatagatggaatttctcaatccaaaaagaaatattcaca
gaacaacaaaagccttttagaaatttgttcttaaagacatagcatattct
gttttcatgccattaagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgctt
gttctaagagatgagcgaatataattatttttagttttcaagagaagcaa
atttaatctttcttctacaagattacactttaatacaatgccaattatgc
atttaagttttatattaatactttctttttgcatatgttttgcatacttt
ctaatggaatttcaccacggcaattcggccaccataatttttgcatacaa
ttcaatatggcggatggaaaggcaaaaaggtctattagtatcaaaactat
aaagtgcaaaCATCAATATATACttatataatctagataggaaacaaata
ttaaatttgattctttttttgttcgtatttctaaattaaatTAACTATta
aagaactatttacaaattattttctttaacgggcgttgaatcgacattga
catatttaatgatgtcataatcaatgccgtgcatattttgtcaacatcat
tttcattggataaataccattaaaatatacaagataagtaaacataaatt
tatcgcccgcgagcacagcttagctaagcgcacctatcttattcattatc
taagaattgaagcgggcaaagattatcgcgcgggctgatagcggacaaag
gttatttgaagatattttcagttataatccaaggtagaacaaactaaaca
tagaaagggggtattttttagtgctctatNNatttttgaattctatgttt
agatttttctacccagccctgttgctatgtacgcgcaccctgttgctaag
acctttgcttgaaatcgaaagtgaaaccaagataatttagcgcacactgc
cgttcgCGTATTATCGATAAAGTggaatgaggtcctgactgattGCGTCA
GAGCgaagctttgtttttattttagtttttatctttgaaagacccaatcg
gatttaggcagggctgtcggatttaggaccactacTCACggtatgtcaga
tctaacaaaattaataacggcactgttATCATTGGCAATATgtgagtacg
cgaagcgattctagctttacgatagtgccgcagatcatcagtggatagta
ttcaattattattatccctttattttctttcctaaaacttttgcaaaaaa
aaaggaaaaacaaaaaagttgtattttttactctattcacatactgaact
tgaaagatcttctatgtggcgtttttttgcaaacttcaaaaaactgattt
ttgtcccgcttgCGGGACTTTAGCTTTTAAAGTGCTTGTgtcaggctgca
tcatttgagaATTTCAGGCGTGTGGTCAACTTACATGCATGATTGGCATT
ATATTATTAAGTGTAATCTtttagaagaaaaatcaaatttgcttctcttg
aaaactgaaaataatgtttttgttagAAGAAAAATACCAATGCGTTTCAA
TGCGTTTTATTCAGCAGCATATTATCTAATtcacaaattgaaatattttc
cagGTGAACATCACATCATGAGTGACAATGAGAGCGATGATGAATTTCTC
AGTGCTGATGAGGGAGAATATGAAGATGGAAAGGGAAAAACCTCAATTGA
TGAAGATGAAGTGGACGAGATTATGGACTTATTGATGAACAAAGaacaaa
tttcaaacaaaaatgaaagtttgcTTTCAGCTAATCCCACtgcaaagaag
aaaaattcatcaATTAATGAAACAACAACAAATTCAATTAAAAAGCAAGA
AGAACCATCAAATGATCAAATAACTAaagacgaaaataaaaaattgaaaa
ttggggAAGAGAATCAAGAAATTAAATCAGCTGAAAGTAATGAATTGAGA
AAGAAATTCATGCCAGAAAATGAGAGACCTCTTGAAGTGAGCAGtgataa
agatgaaaatgaaactgAAGAACCTCCATTAGAAAGCTTGGAAGATATGA
TTGAAGAGTCTTTGAAAGATGAATCAAAGACAAACACTGAAAACCAAATT
GAAGACACTAAGGAAAATCATGATCAACTTATAGAGCAGAATGAGGTTGA
AGTTGATAATCAAGAATCACCAATCATAATGGAAGTTCTGTCTGAGAACA
ATAAAGAGATTGAATCTTTGGAAATTGTCGATGAAAACCAAGCTGGGCAA
CAAGAATCTtcaaaagaagaaacaaaaccAAAACAGCCAAATGAACTATC
TAGTTTGAAATCCAACGTTAAAGTTACTACTGATTCCGATACTATAGAGA
AAAATGAGGATTCAACTAGCAGCGATAAAAATGTCAAGGAAATTCCTGTA
GTTAAGTCTGAAACTAGCATTGAAAATGAAGTGGAAAATACCAGACATGA
CCTTGATGACCTTGATCTGGATGATGATTCTGATGaggaagaaaatttaa
acaaacCTTGTGAAAATGTTTCTGAAAATGTTACAGAGGAAGTGCAAGAA
CAGCCTGTAGCTCAAGATTTGCCTGTCAAAGAAGTTGAAAATGAGTGTAA
TGAGTCTACCACTGAAAATGTATTAAATGAAGATACCCCTACAATTCCTG
AGAGTGAGACAAAGGAATGTACTGAAAGTCAAACAAATGATTCTTGTGAT
TCCGGAATCTCTGTTGCAAATGATGATATTCCGAACTTGGAGAAAAACAA
GCAGCTCTCTGGGGAAGATGAAACAGAATCATCAACACCAACGAGTGAGG
ATAAACCATGCACTCCTGAAAACGATTCTGAAACGCAGGAAGAAACAGAG
CCTGAAGGTGTTGACAGCTTTGATGAAGGAAATGAATGGGGTGATTGGGG
AAATGAGGAAATTGAAGTAGAAAATAAAAGGTaattcaacttttttcttt
ctacACTTTTCTAAAGTACTTTTCAACTTATTCTAGCTAAGCtttgataa
attttggcgggtNGGGAAGAGAATCAAGAAATTAAATCAGCTGAAAGTAA
TGAATTGAGAAAGAAATTCATGCCAGAAAATGAGAGACCTCTTGAAGTGA
GCAGtgataaagatgaaaatgaaactgAAGAACCTCCATTAGAAAGCTTG
GAAGATATGATTGANCAAAGTAAACTTTGCTGCAAACTTTAATTGgtgat
gggtcatttatcaaatttggttCATTGGATCAAAAACTACGTTCAAATGA
ATGATAAACTTACTTTTATATTGTGAAGTATTCTATGACTTgaattcaaa
gttttcaaaatattattgatATAATTCATATGAGGAATTTTTTcttattg
ttgttttgttttagtgtcaatcaaaacaatgaaaaatctAGCAAGTCGGT
CTCTGAAAAGCCACAAACTCAACCTGAGCCTCCAAAGCAAACGCAACAAA
GCCAAGCAGCTTCTCAACCACACGGAGACTGGGGATGGGATTCATGGGCA
GATGATTTTCTCATACAAGCAGCAGGAAAAGTTAGCAACATGTTGGAATC
TGTTGAGGATCAACTTGGTATTCCTGATCCTACAAAAATGGCTCATGTTG
TTTCTAAAGAGGAACGGTTATCCCCAAAGCATTCCCCAGCTCACAAAAAC
AAGGACAAAGTAAAATCTGTAGAAGTTCCAAAGACCAAAGAAGAACCGCC
TGTtcctcaacaacaacaacaacaacaacaaacaccGGCAGCGCCAACAG
GTAAATTAATGTCAAGATATATTTCCATCGTTGAAtcgttgtttttctct
tttttagacTCTCCATTTTTGAACTaataaatttttcatagaaaagcaGA
TGGGATCTTCTATTACTTTAAAACATTTCCATATGATTACGTCATATTAA
TAGATTATAGATTTTTGGAGATCTCTGCACTTTTTCAGGTCTGATTGAAA
TCCTCACGTATTCATGCTGAAGTTATTTGATACCagcttgaaaatttctg
atgtttttcttttattttccagGTGGTTCATCCTGGTTTGGTGGCTTTGG
TGCATCACTATCTGGTCTTGTTCAAAACACCAGTACTGATCTTGTTACTG
GAGGTATTGGTGCCTTAGAATTTATTGGAAAGAAAACAGTTGATATGTTA
TCAGATGGTGACCCTGGTTTACGTCAAGCAAGAGACACGATAGCtggcaa
aaagaaaacaaacctCTCAGCATTGCTACAAGAAGCTAAAGAAACATCAG
AGAAAAATCCAAGTACACGTGCAAAGACTTCTGACGAAATGAACTTTAAT
gattattttgagaaattccaagGCAATATAAACTTGGATGCTTTAGAAAT
GTTATCAAATGAGTGCGATAATAAACTTGAACGGATTTTGCGCTTACAAT
CACATGAAGCAAAACAGGAGACCGAAGAAGTCCTCGCAGAGACGCAAGAG
AAATTTTCACTTCCTGAAGATATCGAGGAAAGCCAATTCAACTCAGATTT
CAAGAAAGATTTATTTGCAACCACAAAAcagttgaaaatgaaagtaacat
GTTCCAAACTCTTAAACACGTGGACCAAACTGAAAGAGAAGTCTAAAAAT
ACAGCCACTGAACCTAAAGAGTGCTTCAATAATACGATATCTGGTTTAGC
AGAACTAACCTCAAAGTGTGTTGAATTTTATCGGAAAGTAGCTGATATGT
TTTTAGCTACAGACATGCAAGCCAGGGACCTTGCTTTACAAAGGGCATCA
GCTTTACAATCCATATCGGTCATGTTTTTGATTGAGTTGACTCAACTGAC
AAATAATTTTGCACAACAAATAGCTGATAATGTCGATCCACAAAAGATTG
TCACGGACATTTATTTGGAAGGCTCTAATTGCAGCTCTATTGTCAGAGAT
TGTCATGATTTGGTACTGCCTATACTTCAATGTTGTATtgtgaaatgagt
ttattttaaatttattattattaataacTCTCTTTTCAAGGGTCCAGCTG
TTACTTatcacattttgaaaatttgcttttcACTCTGGCCCTTCATGAAA
GGTTTTGATTGCATGGTCGTTTTTTTAATacctccaaaaattttgaattc
ctGTTCCTTGTGACAAAATTCATTATCTTTCAGgttcaaattattttctc
aaatatttattACCCAATCCGATCTAAATTTCTGTTGT Coding sequence (CDS) from alignment at scaffold_253:1278434..1285471+ >TCONS_00055461 ID=TCONS_00055461|Name=TCONS_00055461|organism=Clytia hemisphaerica|type=CDS|length=7875bp|location=Sequence derived from alignment at scaffold_253:1278434..1285471+ (Clytia hemisphaerica)
ATGAGTGACAATGAGAGCGATGATGAATTTCTCAGTGCTGATGAGGGAGA
ATATGAAGATGGAAAGGGAAAAACCTCAATTGATGAAGATGAAGTGGACG
AGATTATGGACTTATTGATGAACAAAGaacaaatttcaaacaaaaatgaa
agtttgcTTTCAGCTAATCCCACtgcaaagaagaaaaattcatcaATTAA
TGAAACAACAACAAATTCAATTAAAAAGCAAGAAGAACCATCAAATGATC
AAATAACTAaagacgaaaataaaaaattgaaaattggggAAGAGAATCAA
GAAATTAAATCAGCTGAAAGTAATGAATTGAGAAAGAAATTCATGCCAGA
AAATGAGAGACCTCTTGAAGTGAGCAGtgataaagatgaaaatgaaactg
AAGAACCTCCATTAGAAAGCTTGGAAGATATGATTGAAGAGTCTTTGAAA
GATGAATCAAAGACAAACACTGAAAACCAAATTGAAGACACTAAGGAAAA
TCATGATCAACTTATAGAGCAGAATGAGGTTGAAGTTGATAATCAAGAAT
CACCAATCATAATGGAAGTTCTGTCTGAGAACAATAAAGAGATTGAATCT
TTGGAAATTGTCGATGAAAACCAAGCTGGGCAACAAGAATCTtcaaaaga
agaaacaaaaccAAAACAGCCAAATGAACTATCTAGTTTGAAATCCAACG
TTAAAGTTACTACTGATTCCGATACTATAGAGAAAAATGAGGATTCAACT
AGCAGCGATAAAAATGTCAAGGAAATTCCTGTAGTTAAGTCTGAAACTAG
CATTGAAAATGAAGTGGAAAATACCAGACATGACCTTGATGACCTTGATC
TGGATGATGATTCTGATGaggaagaaaatttaaacaaacCTTGTGAAAAT
GTTTCTGAAAATGTTACAGAGGAAGTGCAAGAACAGCCTGTAGCTCAAGA
TTTGCCTGTCAAAGAAGTTGAAAATGAGTGTAATGAGTCTACCACTGAAA
ATGTATTAAATGAAGATACCCCTACAATTCCTGAGAGTGAGACAAAGGAA
TGTACTGAAAGTCAAACAAATGATTCTTGTGATTCCGGAATCTCTGTTGC
AAATGATGATATTCCGAACTTGGAGAAAAACAAGCAGCTCTCTGGGGAAG
ATGAAACAGAATCATCAACACCAACGAGTGAGGATAAACCATGCACTCCT
GAAAACGATTCTGAAACGCAGGAAGAAACAGAGCCTGAAGGTGTTGACAG
CTTTGATGAAGGAAATGAATGGGGTGATTGGGGAAATGAGGAAATTGAAG
TAGAAAATAAAAGtgtcaatcaaaacaatgaaaaatctAGCAAGTCGGTC
TCTGAAAAGCCACAAACTCAACCTGAGCCTCCAAAGCAAACGCAACAAAG
CCAAGCAGCTTCTCAACCACACGGAGACTGGGGATGGGATTCATGGGCAG
ATGATTTTCTCATACAAGCAGCAGGAAAAGTTAGCAACATGTTGGAATCT
GTTGAGGATCAACTTGGTATTCCTGATCCTACAAAAATGGCTCATGTTGT
TTCTAAAGAGGAACGGTTATCCCCAAAGCATTCCCCAGCTCACAAAAACA
AGGACAAAGTAAAATCTGTAGAAGTTCCAAAGACCAAAGAAGAACCGCCT
GTtcctcaacaacaacaacaacaacaacaaacaccGGCAGCGCCAACAGG
TGGTTCATCCTGGTTTGGTGGCTTTGGTGCATCACTATCTGGTCTTGTTC
AAAACACCAGTACTGATCTTGTTACTGGAGGTATTGGTGCCTTAGAATTT
ATTGGAAAGAAAACAGTTGATATGTTATCAGATGGTGACCCTGGTTTACG
TCAAGCAAGAGACACGATAGCtggcaaaaagaaaacaaacctCTCAGCAT
TGCTACAAGAAGCTAAAGAAACATCAGAGAAAAATCCAAGTACACGTGCA
AAGACTTCTGACGAAATGAACTTTAATgattattttgagaaattccaagG
CAATATAAACTTGGATGCTTTAGAAATGTTATCAAATGAGTGCGATAATA
AACTTGAACGGATTTTGCGCTTACAATCACATGAAGCAAAACAGGAGACC
GAAGAAGTCCTCGCAGAGACGCAAGAGAAATTTTCACTTCCTGAAGATAT
CGAGGAAAGCCAATTCAACTCAGATTTCAAGAAAGATTTATTTGCAACCA
CAAAAcagttgaaaatgaaagtaacatGTTCCAAACTCTTAAACACGTGG
ACCAAACTGAAAGAGAAGTCTAAAAATACAGCCACTGAACCTAAAGAGTG
CTTCAATAATACGATATCTGGTTTAGCAGAACTAACCTCAAAGTGTGTTG
AATTTTATCGGAAAGTAGCTGATATGTTTTTAGCTACAGACATGCAAGCC
AGGGACCTTGCTTTACAAAGGGCATCAGCTTTACAATCCATATCGGTCAT
GTTTTTGATTGAGTTGACTCAACTGACAAATAATTTTGCACAACAAATAG
CTGATAATGTCGATCCACAAAAGATTGTCACGGACATTTATTTGGAAGGC
TCTAATTGCAGCTCTATTGTCAGAGATTGTCATGATTTGGTACTGCCTAT
ACTTCAATGTTGTATtgtgaaatgaATGAGTGACAATGAGAGCGATGATG
AATTTCTCAGTGCTGATGAGGGAGAATATGAAGATGGAAAGGGAAAAACC
TCAATTGATGAAGATGAAGTGGACGAGATTATGGACTTATTGATGAACAA
AGaacaaatttcaaacaaaaatgaaagtttgcTTTCAGCTAATCCCACtg
caaagaagaaaaattcatcaATTAATGAAACAACAACAAATTCAATTAAA
AAGCAAGAAGAACCATCAAATGATCAAATAACTAaagacgaaaataaaaa
attgaaaattggggAAGAGAATCAAGAAATTAAATCAGCTGAAAGTAATG
AATTGAGAAAGAAATTCATGCCAGAAAATGAGAGACCTCTTGAAGTGAGC
AGtgataaagatgaaaatgaaactgAAGAACCTCCATTAGAAAGCTTGGA
AGATATGATTGAAGAGTCTTTGAAAGATGAATCAAAGACAAACACTGAAA
ACCAAATTGAAGACACTAAGGAAAATCATGATCAACTTATAGAGCAGAAT
GAGGTTGAAGTTGATAATCAAGAATCACCAATCATAATGGAAGTTCTGTC
TGAGAACAATAAAGAGATTGAATCTTTGGAAATTGTCGATGAAAACCAAG
CTGGGCAACAAGAATCTtcaaaagaagaaacaaaaccAAAACAGCCAAAT
GAACTATCTAGTTTGAAATCCAACGTTAAAGTTACTACTGATTCCGATAC
TATAGAGAAAAATGAGGATTCAACTAGCAGCGATAAAAATGTCAAGGAAA
TTCCTGTAGTTAAGTCTGAAACTAGCATTGAAAATGAAGTGGAAAATACC
AGACATGACCTTGATGACCTTGATCTGGATGATGATTCTGATGaggaaga
aaatttaaacaaacCTTGTGAAAATGTTTCTGAAAATGTTACAGAGGAAG
TGCAAGAACAGCCTGTAGCTCAAGATTTGCCTGTCAAAGAAGTTGAAAAT
GAGTGTAATGAGTCTACCACTGAAAATGTATTAAATGAAGATACCCCTAC
AATTCCTGAGAGTGAGACAAAGGAATGTACTGAAAGTCAAACAAATGATT
CTTGTGATTCCGGAATCTCTGTTGCAAATGATGATATTCCGAACTTGGAG
AAAAACAAGCAGCTCTCTGGGGAAGATGAAACAGAATCATCAACACCAAC
GAGTGAGGATAAACCATGCACTCCTGAAAACGATTCTGAAACGCAGGAAG
AAACAGAGCCTGAAGGTGTTGACAGCTTTGATGAAGGAAATGAATGGGGT
GATTGGGGAAATGAGGAAATTGAAGTAGAAAATAAAAGtgtcaatcaaaa
caatgaaaaatctAGCAAGTCGGTCTCTGAAAAGCCACAAACTCAACCTG
AGCCTCCAAAGCAAACGCAACAAAGCCAAGCAGCTTCTCAACCACACGGA
GACTGGGGATGGGATTCATGGGCAGATGATTTTCTCATACAAGCAGCAGG
AAAAGTTAGCAACATGTTGGAATCTGTTGAGGATCAACTTGGTATTCCTG
ATCCTACAAAAATGGCTCATGTTGTTTCTAAAGAGGAACGGTTATCCCCA
AAGCATTCCCCAGCTCACAAAAACAAGGACAAAGTAAAATCTGTAGAAGT
TCCAAAGACCAAAGAAGAACCGCCTGTtcctcaacaacaacaacaacaac
aacaaacaccGGCAGCGCCAACAGGTGGTTCATCCTGGTTTGGTGGCTTT
GGTGCATCACTATCTGGTCTTGTTCAAAACACCAGTACTGATCTTGTTAC
TGGAGGTATTGGTGCCTTAGAATTTATTGGAAAGAAAACAGTTGATATGT
TATCAGATGGTGACCCTGGTTTACGTCAAGCAAGAGACACGATAGCtggc
aaaaagaaaacaaacctCTCAGCATTGCTACAAGAAGCTAAAGAAACATC
AGAGAAAAATCCAAGTACACGTGCAAAGACTTCTGACGAAATGAACTTTA
ATgattattttgagaaattccaagGCAATATAAACTTGGATGCTTTAGAA
ATGTTATCAAATGAGTGCGATAATAAACTTGAACGGATTTTGCGCTTACA
ATCACATGAAGCAAAACAGGAGACCGAAGAAGTCCTCGCAGAGACGCAAG
AGAAATTTTCACTTCCTGAAGATATCGAGGAAAGCCAATTCAACTCAGAT
TTCAAGAAAGATTTATTTGCAACCACAAAAcagttgaaaatgaaagtaac
atGTTCCAAACTCTTAAACACGTGGACCAAACTGAAAGAGAAGTCTAAAA
ATACAGCCACTGAACCTAAAGAGTGCTTCAATAATACGATATCTGGTTTA
GCAGAACTAACCTCAAAGTGTGTTGAATTTTATCGGAAAGTAGCTGATAT
GTTTTTAGCTACAGACATGCAAGCCAGGGACCTTGCTTTACAAAGGGCAT
CAGCTTTACAATCCATATCGGTCATGTTTTTGATTGAGTTGACTCAACTG
ACAAATAATTTTGCACAACAAATAGCTGATAATGTCGATCCACAAAAGAT
TGTCACGGACATTTATTTGGAAGGCTCTAATTGCAGCTCTATTGTCAGAG
ATTGTCATGATTTGGTACTGCCTATACTTCAATGTTGTATtgtgaaatga
ATGAGTGACAATGAGAGCGATGATGAATTTCTCAGTGCTGATGAGGGAGA
ATATGAAGATGGAAAGGGAAAAACCTCAATTGATGAAGATGAAGTGGACG
AGATTATGGACTTATTGATGAACAAAGaacaaatttcaaacaaaaatgaa
agtttgcTTTCAGCTAATCCCACtgcaaagaagaaaaattcatcaATTAA
TGAAACAACAACAAATTCAATTAAAAAGCAAGAAGAACCATCAAATGATC
AAATAACTAaagacgaaaataaaaaattgaaaattggggAAGAGAATCAA
GAAATTAAATCAGCTGAAAGTAATGAATTGAGAAAGAAATTCATGCCAGA
AAATGAGAGACCTCTTGAAGTGAGCAGtgataaagatgaaaatgaaactg
AAGAACCTCCATTAGAAAGCTTGGAAGATATGATTGAAGAGTCTTTGAAA
GATGAATCAAAGACAAACACTGAAAACCAAATTGAAGACACTAAGGAAAA
TCATGATCAACTTATAGAGCAGAATGAGGTTGAAGTTGATAATCAAGAAT
CACCAATCATAATGGAAGTTCTGTCTGAGAACAATAAAGAGATTGAATCT
TTGGAAATTGTCGATGAAAACCAAGCTGGGCAACAAGAATCTtcaaaaga
agaaacaaaaccAAAACAGCCAAATGAACTATCTAGTTTGAAATCCAACG
TTAAAGTTACTACTGATTCCGATACTATAGAGAAAAATGAGGATTCAACT
AGCAGCGATAAAAATGTCAAGGAAATTCCTGTAGTTAAGTCTGAAACTAG
CATTGAAAATGAAGTGGAAAATACCAGACATGACCTTGATGACCTTGATC
TGGATGATGATTCTGATGaggaagaaaatttaaacaaacCTTGTGAAAAT
GTTTCTGAAAATGTTACAGAGGAAGTGCAAGAACAGCCTGTAGCTCAAGA
TTTGCCTGTCAAAGAAGTTGAAAATGAGTGTAATGAGTCTACCACTGAAA
ATGTATTAAATGAAGATACCCCTACAATTCCTGAGAGTGAGACAAAGGAA
TGTACTGAAAGTCAAACAAATGATTCTTGTGATTCCGGAATCTCTGTTGC
AAATGATGATATTCCGAACTTGGAGAAAAACAAGCAGCTCTCTGGGGAAG
ATGAAACAGAATCATCAACACCAACGAGTGAGGATAAACCATGCACTCCT
GAAAACGATTCTGAAACGCAGGAAGAAACAGAGCCTGAAGGTGTTGACAG
CTTTGATGAAGGAAATGAATGGGGTGATTGGGGAAATGAGGAAATTGAAG
TAGAAAATAAAAGtgtcaatcaaaacaatgaaaaatctAGCAAGTCGGTC
TCTGAAAAGCCACAAACTCAACCTGAGCCTCCAAAGCAAACGCAACAAAG
CCAAGCAGCTTCTCAACCACACGGAGACTGGGGATGGGATTCATGGGCAG
ATGATTTTCTCATACAAGCAGCAGGAAAAGTTAGCAACATGTTGGAATCT
GTTGAGGATCAACTTGGTATTCCTGATCCTACAAAAATGGCTCATGTTGT
TTCTAAAGAGGAACGGTTATCCCCAAAGCATTCCCCAGCTCACAAAAACA
AGGACAAAGTAAAATCTGTAGAAGTTCCAAAGACCAAAGAAGAACCGCCT
GTtcctcaacaacaacaacaacaacaacaaacaccGGCAGCGCCAACAGG
TGGTTCATCCTGGTTTGGTGGCTTTGGTGCATCACTATCTGGTCTTGTTC
AAAACACCAGTACTGATCTTGTTACTGGAGGTATTGGTGCCTTAGAATTT
ATTGGAAAGAAAACAGTTGATATGTTATCAGATGGTGACCCTGGTTTACG
TCAAGCAAGAGACACGATAGCtggcaaaaagaaaacaaacctCTCAGCAT
TGCTACAAGAAGCTAAAGAAACATCAGAGAAAAATCCAAGTACACGTGCA
AAGACTTCTGACGAAATGAACTTTAATgattattttgagaaattccaagG
CAATATAAACTTGGATGCTTTAGAAATGTTATCAAATGAGTGCGATAATA
AACTTGAACGGATTTTGCGCTTACAATCACATGAAGCAAAACAGGAGACC
GAAGAAGTCCTCGCAGAGACGCAAGAGAAATTTTCACTTCCTGAAGATAT
CGAGGAAAGCCAATTCAACTCAGATTTCAAGAAAGATTTATTTGCAACCA
CAAAAcagttgaaaatgaaagtaacatGTTCCAAACTCTTAAACACGTGG
ACCAAACTGAAAGAGAAGTCTAAAAATACAGCCACTGAACCTAAAGAGTG
CTTCAATAATACGATATCTGGTTTAGCAGAACTAACCTCAAAGTGTGTTG
AATTTTATCGGAAAGTAGCTGATATGTTTTTAGCTACAGACATGCAAGCC
AGGGACCTTGCTTTACAAAGGGCATCAGCTTTACAATCCATATCGGTCAT
GTTTTTGATTGAGTTGACTCAACTGACAAATAATTTTGCACAACAAATAG
CTGATAATGTCGATCCACAAAAGATTGTCACGGACATTTATTTGGAAGGC
TCTAATTGCAGCTCTATTGTCAGAGATTGTCATGATTTGGTACTGCCTAT
ACTTCAATGTTGTATtgtgaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055461-exon-scaffold_253-1491911889:1278434..1278611 | TCONS_00055461-exon-scaffold_253-1491911889:1278434..1278611 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1510915933:1278434..1278611 | TCONS_00055461-exon-scaffold_253-1510915933:1278434..1278611 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1575043694:1278434..1278611 | TCONS_00055461-exon-scaffold_253-1575043694:1278434..1278611 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1491911889:1281887..1283213 | TCONS_00055461-exon-scaffold_253-1491911889:1281887..1283213 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1510915933:1281887..1283213 | TCONS_00055461-exon-scaffold_253-1510915933:1281887..1283213 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1575043694:1281887..1283213 | TCONS_00055461-exon-scaffold_253-1575043694:1281887..1283213 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1491911889:1283648..1284033 | TCONS_00055461-exon-scaffold_253-1491911889:1283648..1284033 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1510915933:1283648..1284033 | TCONS_00055461-exon-scaffold_253-1510915933:1283648..1284033 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1575043694:1283648..1284033 | TCONS_00055461-exon-scaffold_253-1575043694:1283648..1284033 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1491911889:1284306..1285471 | TCONS_00055461-exon-scaffold_253-1491911889:1284306..1285471 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1510915933:1284306..1285471 | TCONS_00055461-exon-scaffold_253-1510915933:1284306..1285471 | Clytia hemisphaerica | exon |
| TCONS_00055461-exon-scaffold_253-1575043694:1284306..1285471 | TCONS_00055461-exon-scaffold_253-1575043694:1284306..1285471 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:1278434..1285471 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007998 | DUF719 |
Blast
BLAST of TCONS_00055461 vs. Swiss-Prot (Human)
Match: F1142 (Protein FAM114A2 OS=Homo sapiens GN=FAM114A2 PE=1 SV=4) HSP 1 Score: 139.428 bits (350), Expect = 1.827e-34 Identity = 126/445 (28.31%), Postives = 210/445 (47.19%), Query Frame = 1
Query: 1609 PHGDWG-WDSWADDFLIQAAGKV-------SNMLESVEDQLGIPDPTKMAHVVSKEERLSPKHSPAHKNKDKVKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQNTSTDLVTGGIGALEFIGKKTVDMLSDGDPGLRQARDTIAGKKKTNLSALLQEAKETSEKNPSTR--AKTSDEMNFNDYFEKFQGNINLDALEMLSNECDNKLERILRLQSHEAKQETEEVLAETQEKFSLPE----DIEESQFNSDFKKDLFATTKQLKMKVTCSKLL---NT---WTKL---------KEKSKNTATEPKECFNN---------TISGLAELTSKCVEFYRKVADMFLATDMQARDLALQRASALQSISVMFLIELTQLTNNF--------AQQIADNVDPQKIVTDIYLEGSNCSSIVRDCHDLVLPILQCC 2805
P WG W SW L A+ V SN++E E LGIP P++ +S E + + A +N++ + + G +++S VQ+T +++GG+ ALEFIGKKT+D++++GDPG ++ + + + LS +L+EAKE E S +T + ++ F++FQG +L+ALEMLS E + K++ IL S E + + L + +E FSL E + EE + + DF KD+ QL + KL NT W + +E K + E E N I LAELT+ +E + K A + L Q A++R+ L ++++ EL+ L+ F +++AD ++P ++T ++LE SN +S ++D L+LP+L+
Sbjct: 78 PQTRWGYWGSWGKSILSSASATVATVGQGISNVIEKAETSLGIPGPSE----ISTEVKYVAGETNAKENEN------------------------------SSPVAGAFGVFSTISTAVQSTGKSVISGGLDALEFIGKKTMDVIAEGDPGFKRTKGLM--NRNATLSQVLREAKEKEEIRTSNEVTVETDKKTHYGLLFDEFQGLSHLEALEMLSQESEIKVKSILNSLSGEELETLKVELEQLKETFSLAEFCEEEEEEKKGDEDFTKDITELFSQLHVSSKPEKLARARNTAHEWIRKSLTKPLAENEEGEKQSEAENTEQVNKNSIEDIHAFAIRSLAELTACSIELFHKTAALVLHGRKQ-EVTAIERSQTLSQMTIVLCKELSSLSKEFTTCLTTAGVKEMADVLNP--LITAVFLEASNSASYIQDAFQLLLPVLEIS 483
The following BLAST results are available for this feature:
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