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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055469 ID=TCONS_00055469|Name=TCONS_00055469|organism=Clytia hemisphaerica|type=transcript|length=1985bpRun BLAST on NCBI protein sequence of TCONS_00055469-protein >TCONS_00055469-protein ID=TCONS_00055469-protein|Name=TCONS_00055469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp MAPTTGDLMDLNDVQASKQHTHAVVRDYISQPRLNYKTVSGVNGPLVILDRun BLAST on NCBI transcript from alignment at scaffold_253:81218..92284- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055469 ID=TCONS_00055469|Name=TCONS_00055469|organism=Clytia hemisphaerica|type=transcript|length=11067bp|location=Sequence derived from alignment at scaffold_253:81218..92284- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:81218..92284- >TCONS_00055469 ID=TCONS_00055469|Name=TCONS_00055469|organism=Clytia hemisphaerica|type=CDS|length=22680bp|location=Sequence derived from alignment at scaffold_253:81218..92284- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055469 vs. Swiss-Prot (Human)
Match: VATB2 (V-type proton ATPase subunit B, brain isoform OS=Homo sapiens GN=ATP6V1B2 PE=1 SV=3) HSP 1 Score: 892.493 bits (2305), Expect = 0.000e+0 Identity = 427/481 (88.77%), Postives = 453/481 (94.18%), Query Frame = 3
Query: 174 ASKQHTHAVVRDYISQPRLNYKTVSGVNGPLVILDQVKFPKFAEIVSLTLPDGTQRSGQVLEVSGSKAVVQVFEGTSGIDAKHTACEFTGDILRTPISSDMLGRVFNGSGKPIDNGPPILAEDYLDINGQPINPWSRIYPEEMIQTGISAIDTMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVKHGKGTMDYSDDNFAIVFAAMGVNRETARFFEQDFKENGSMENVCLFLNLANDPTIERIITPRLALTAAEYLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSDDLLYLEFLQKFEKNFIAQGNYENRTIFESLDIGWKLLRIFPKEMLKRIPAKTLAEFYQRD 1616
+++ AV R+Y+SQPRL YKTVSGVNGPLVILD VKFP++AEIV LTLPDGT+RSGQVLEVSGSKAVVQVFEGTSGIDAK T+CEFTGDILRTP+S DMLGRVFNGSGKPID GP +LAED+LDI GQPINP RIYPEEMIQTGISAID MNSIARGQKIPIFSA+GLPHNEIAAQICRQAGLVK K +DYS++NFAIVFAAMGVN ETARFF+ DF+ENGSM+NVCLFLNLANDPTIERIITPRLALT AE+LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYA YAIGKDVQAMKAVVGEEAL+SDDLLYLEFLQKFE+NFIAQG YENRT+FE+LDIGW+LLRIFPKEMLKRIP TL+EFY RD
Sbjct: 27 GAREQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRD 507 The following BLAST results are available for this feature:
BLAST of TCONS_00055469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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