TCONS_00055473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055473
Unique NameTCONS_00055473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1028

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055473 ID=TCONS_00055473|Name=TCONS_00055473|organism=Clytia hemisphaerica|type=transcript|length=1028bp
GCTCTTTAAAAAGAATAGTTGGGTGATCAAAATGATGTAAACAAATCTGG
ACTTCATGACTTTATGACTtttaaaaatcactaaaatctcTGCATAAAAC
TGTCATCTGGACAAGCAACTTAAGTGAAACAAATGAGCGTGTTCTACATG
TTCATCCAATAATTCATGTCTCGAAGAATTGGCTTAATCAACAAAAAAGG
TATTCAGATACTAATTCATCTTCTAATAATTCATTCGATGATGCTAACAA
GTTGCTGACGTCACGTTTCCCACCGACAAGAACCGTATTAGGTGCTGTAA
TGCATTGTACGGAGTAGAAAATGGTTAATGTGAACATGGTGATTAATATA
AAATGACTCATGGTTTGTTTGgttagtttgttttgttttgtataCCTGAA
AATGAACTGAAATCTATAACATGGTGAAAAATCAGAACTTAAAATTGGTG
TTAcatgtaaaataaaaatgttctaaGTGGTTCGGGATAATTAGCCGATG
AAAAGAATTTCATTtatcgttcttttttttcaaaatctcaagcctatttt
ggtgaaaagaaATGTATGCTGAATCGGTCACGGCTGAATTTGTCTCCATC
TCATTACTGAAACCTCTTTAATTGGAAAGCACTTAATTACTCTCCCTTTA
CCTTCACAAAACCTAAAAACAGACTCGAATCTCTTATAAACGTACCGTAA
GGAACTTGGCAAGAGAAAAATTTACCCGCACGTTTGCTTAGAGACTCGAA
AGTATTCGAATTTGTTCATTTATGttctctacacgtttttttttttaaga
aactagttttaccaagcagcctcaatgtttcttaagaaatcggccttttg
agccttaaatgtttcttacatgtttctaaactttttgacataattagcct
tgttcttatgaaaaaacgaattgaaaaatgttattttctcattctcagcc
tcagcatgtttcttagatgtttcttagtttttaggcattctgagcctcat
gtttcttaaaagtgtgtttcttaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_253:155079..163233-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055473 ID=TCONS_00055473|Name=TCONS_00055473|organism=Clytia hemisphaerica|type=transcript|length=8155bp|location=Sequence derived from alignment at scaffold_253:155079..163233- (Clytia hemisphaerica)
GCTCTTTAAAAAGAATAGTTGGGTGATCAAAATGATGTAAACAAATCTGG ACTTCATGACTTTATGACTTTTAAAAATCACTAAAATCTCTGCATAAAAC TGTCATCTGGACAAGCAACTTAAGTGAAACAAATGAGGTAAGAACATAGA TGTGTTATATTTAAAGAGCTCGATTTCTTTCTCTTATCTTTCTTTATATT CTGAGGACTTTATCTCTTAAAAATATCTCTTTATTTCTTATCTTTATCTC CTCTCTTTGATTTGTCAACTATTTTATTGATTTTGGATGAGGTTTTCAGT ACAGTGACAACTTTTCTTTGTTGTACTCCTGGCATATTGATTGTAATTCT ATATGACAATAACATTTAGCCTCTTTTCATTTTGGATTTCGCCTTGATAC ACTCTGCACTGGTTCTAATTCTATTTCTATTTGTGACACTCTCAACCCAA CCCTCCATTTTATCGTTAATCTTTTAACACAATTCTATTTGGTGCATTGA TTGGTTACATTTTGAGTCTCATCATCGATCAAGGTTTTGGCAGGTGATGT CATTTTTTGTTGAAGTTTGGTGGTTTTTCTCATTTTTTTGTAGATTTGTT AAAATTTCTCCATTTTTTTAAAATCCGAAGTTTTATGACAACCGTTCTGC TCTGACGTCAAGTAAAAATATCTTCAGCATGTCCCATATACTTTTAATGG TACTGTAAGTTGGTCTAGTGTCAGCAACATTCCTCTTCTAATTTCAAAAT CCTTCTTTAGAAATAGGAATAATAGGAAGGTCAGAATCACTGTTGGAATC CCTCAACTGATTGCTATACCGACACTAAAGAAAATTAGTTTCAGCGATTC CAACCTTCCTATTATTCCTATCTCTAAAGTTAAAGAAGATTGTCAAAATT AGATGAGGGATGTCAACATTAGACTAACTTAAGGTATGTATTTCCACATG GCAAATGCATCTTATTTTTCGAAAACCTCAAAACTGTACAAGTGACTCCT CAAAAGTGGATGCCCAGGAAAAGTTTTCACATTATTTAATTTTATAGATT TGAATCTTTGAGAACAAGGTGGATGTGCTTAAACCTAGCGTAGAAATTCA GGCGTTAGAATGGTGATGCTCCTCTCTTCTTGAAAGCTTTGACTTACAGT ACATCAATATCTTAATATCTGCTCCTTACGCCAATACACCAAAAGAAGTA ATTACTCTTTCACTCTGAATATCTTTGGCGTACTGTACACCATTTCTAGA CTGGCTTAATACTTAGGAGCTTAGTATCTCAGGATAAAAAAAGCCTCAAA TTGTTCCAATAAGGCCTAGAACCCACTGAGCCCTACCAAAATTAAATAAT ATAATGGCGATACTTTTGAGCAGGCTGGATACTTCTTTGCTGAGAATTAG CACATTTGCTACTTTGATTTTTGGGGCGGGCTTGGAAAGTTCCCCTGAGG AGGGGTTTTTTTGCTAGATATTTGAATTTTTGTAGAAATTTTGTGCATTT TTTCCTTCTGTAAATTTGTGCAGGACCTATTGTTTTGTTTTTAGGCTTTG GGATGAATTTCCCCCTATTTCTGGAATTTGGGGGGGGGCCTCAGGGTGCC TGCATAGTTGTGATACATGGCTCCGACTGGGGTTCTAGGTCCCCCCGCTA AATTTAGGTCCCCCCTAAGAACAAGGTCCCCCCCAGCCTGATAAAATTTT AGGTCCCAGTATAATAGGGGAAAAATTTTTGATATATAATTTTTTTTCAA TGTGAGTTTTTACCATTTAGTCNTGAAGACATAAAGGTTTTTTAGAGAAA TTAAAAACAGTAAAGAAAAAAATTTAGGAAGTGTTATTTAGCCCCCACAG TTACATAAAATTATGCAGGTCCCCCCCCCAAGATAGAGCTCCCCCCGCCT GTCAGGCAAAAACAAACAGCTCCCACGTATATGGCAAATTTGAGGTGTAG CTCCCCCAGCTCAGGCGGGGGGGGGGTGCGAGCCATGTGATATTTACCAG TACCTTTGATCTGGAGTATATAAATTAGTGCAAGATCAAGAGGTTTCACA TTTGACTCTAATTGTCTGTCCGTCTGATGTATCAATCAAGAATGTATTTT GTCTAGTTAGAAGACACCTGGAAATATTCTTTCTGAGCTGTAAATTGAAA TCATTCTATTCTATTTTTTTTTCGAAGACACCATCATGAGTTTTGATAAT GACTTCAACAAATATGACTCAATCAATGTAACACTTTCAGATGTCTTGGA TGTGAATCTTGGAGTACAATTGAAAGAAAAACAACAAATATTATCTACCA GAGAGAAAAATTTTGATAAGGTTTTTGCACCTAGTACACCTGGCCTTGAG ATTCGAGTTCCTTGTACAACACCAATTTCTGATGATGATTCTTCGGACTC TTATGAAAGTGATGATGAAGGTTTAATACCAGTTCTTCCGTTTGTGATGG TAAATAAAAGTCAGAAACATTTATCTCAAAATAACAAGATGATTTTAAAG AAAATACATGAAAAAAACTTGTCCGTTTCTTCAAAAGCTATCAATGACAG AGAACGTTTAACAGAAAAGCAAACGGCAAAAATTGCCAAATGTTCTACTA TTGTTAAATGTAAATGTGAGTGTCACATTACAAAACCATCGAATGTGAAT AAGAAGACCAACGAGTCATCTAAATCAAAAGAAATTCGTCCTTCATCAGC TTTATCAACAAAGGAATTCACTTTTTCATTGCCCAATGAGCGACTGAATG TAAGGAAACAAAATAAGCCTCCTATGATGAGAAGATCGTTTTCAAGTCAG AATTTACGACCAACTAGTCACTATACGAAATATTCTTCAAATCGACCTTA TTCTGCACTACCACGTACATCAGAAAAACCAAAACAGTTACTGATTCCAA AAATATTGAACATTCAACCATCAGTTATGTTGAAAGGACATTCACTCCCA GTTGGAAAACACACAGTCAAAACATTGAACTACATGCATCATCTTCATCA GAGAGAGCGAACATTATCAAAAAAGATAAATCATCAACACAGTGAAATTG AAATTTGTAAAACTAATAATAGTTTTGAGAGTTTAAGTATATCACCATCA ACTAGAGCAAGTACTCTTAATACCAATAACGTAAAAGATAATTGTGACTT GAATACAAACCAAGGTCATAGACTTTCTAAACATCAACTTGGAGAAGACA TTCAGAATGTTGCTACAGTGAATGATTTCAATACTAATAAGGAACCACAA GAGGAAGTTGTCGACCATTATTATGTGGAAAAGGACGAAAAACATTTCAA ACAATTACCAATACAAAGATCTATCAAAAGTGCCAAGAAACAAGTTCAGT TTAATACAAAACCACCAAGCTGAATTATGTTCAAAAATGATTAACCTCAC TAATCATTGCTAACAGTTAATGGGTTTTGATGGACTATCGAGAATCAATA ACAACTAACAAAATGTCCAAAGATTTAAATCAAGACTTAGTAAGTTTTAT TTTGTCAATACTTACTATATACTAACTTTGAGCTCACATTGAGTCTTAAT AAAAGTATAATTTGTTCATGGTATTTTAGCAGATTTTAACACGGGAAAAA CAAGTGTGCAGTTTTCTTTCTATTTTTAGAAGAATGTTTAAAGTTCATCA TAACTAAAACAACCAGAAGACTTGACCCGGTTAAAAACTTAAGTCAGTGG AGATTGAATTAGGGAACCATATTATTTTGTTTTTAATAAGCGATTTCAAT CAGTATAATTGTTTAAAACTTCAGCTCCGAGTTTTTGACCAATCAGTGAA TTCCAGTCCAGTCCAGCTTTCACTTTTATAAGGAAGATAGTATTTTTAGT GGTGATGGAGATTTTGCATAGGTCTTACCGGGTTTGACAGTTAAATGAAA TTTAATAATTTATTGTTACTTTTTTTCAGCGTGTTCTACATGTTCATCCA ATAATTCATGTCTCGAAGAATTGGCTTAATCAACAAAAAAGGTATATGAT TCATCTTTTTGACTAAACCTTATTGTCGTCAAAGCAAATAGTTTCTATCA AACATAGAGAATAATAGATTTAACATGTTCGTATTTGGAAAGCATAGAGA TTTTATTTCTTCCCTCGAAAACCCATATTGGTGAGGTTAAGTAAATCGGT AAAATCACGACGACGAACGAAAATTTAACAGGCTAGTGAGTTTCAACCAA TCAAATTTCGTATTTTCACTAGCCTTTTACATTTTTGGTCCGTCGTCGTG ATTATCCTTGTATGCTTAACTTCAGTATTGATTAAGATATGCACCACTGG AGAGTCTTCCAAGAATTTTCAAAAATTCCACCCAATACGTCACTTTTTCT ATTGTTTCTATTGTATTGGGTGAAAAATTTGAAAAGTTTTCAGAAGACTC TCCAGTGGTGCATATCATAAATACCGTCAACTAAGGGGTCTCCACTTTAA AAAGTCCTTCTCAACTGTCAACTATCAAAATAACATCACTCAACAAAAAT TTTGAGCATAAACTTTCGTTCTCTTAAAAAAATGACCAGTGCTATGTGAT ACATAAGTAAGAAGTAACTGAAAAATGTAATTATTTTATTTCCTTGAAGC GAAGGTTCCAAATTCCTTTATCTTTGTTCATATCAATCACTATAGAGGCT CACTAAAATAGCTTTTATTATACTTTTCCAGTTTTGACTTTTAACGGTAT ATATACAAAATGTTATTGAGTGCTGCAATAAGACAATCGTCAATTATTTA GATATTACTCTTAACCTTGAAGATGGTTCATTCAAGCCTTACCTGAAACC AGACAACAAACTTCAATATATAAATACTCAATCAAACCACCCTCCAAACG TGATCAGGCAAATACCCAAAACGATCGAACAACGACTGTCAAATCACTCA TCCAACGAACATATCTTCACCGAAGCCAAAAAACCGTACGAGAAAGCGTT GAAAGAAAGCGGCTACAACGTCGAACTTTCGTATAAGCCAACCAATCCAA AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTGTATAGAAT TTTTGACTGAAGATCGTGACGAAAAGTTGCGTGAAACTTTGAGTATCAAA CAATTCTTATCTCAACTTCAATTTATTGTGTACAAAATGTTTACAAATTC TAGTAACCTACAGTACATATTAAAACCAAAATCAATACATATGGCGACCA CGTCTGAGTTTTTCATAATCATTCATGATGTCTACCAGTTGATGTTTTAA ACTCTTCATCTCTCTAGTGACCTAGTAGAGAAAAAAAAGTAGTTTTTAAG AAAAAAAAGCATGGATGAAGATTGGTTCTCTGAAGGTCTATTATTTTCTT GCTAAAAATCACAGAAAGTTTAAACTTGAGTTTGTTAGTTCAAAGTAGAT TTGGTTTGATTTGGTTGATTCATTCAAAGTACACGTTTTTTATAATAACA TACTTTATAAGAACATGAGGCTTCGATGGCCAAAATATTGAAAACAAGCG CAAGACAATTGAGACTTCACGATCTCCAAAATACCGGCAATTTTTTAGAT AACTGCAGAAAAACACTCTCGAAATGGTGAAAATAAGAACATTTTAGGAA CATTTTTATATAGGCTTAAATCTTAAAAAGTTAAGAACATCCGCAGGCTG CAAAATTTTGAATGCTCTTATAAAAAAAAACATGTATACCCCACCCGTTA ACGGTGTTGCGGTAAATTAAGACTCCGGGAGATTAGGACCTCAAAGTCAT GATTTATGACTTCAAGAGCCCTGGCGAAATTCATTGGATTTTCGCCTTTT TGTTGGTAAGGCGAGACCAAATTAATTTCGTAGTTTTCCCGGTTTTAGGA AGGAAAATCTTTCTTTCATATTTTCTAGGGGTTTAACTTATAAGGAATAG ATTTGCACTGTGTCAATGGAATAAGAATTAATCGACCTCTGCTAATTCCA TACTATCCATTCATCATCATCATCATCATCCTTCGATCTATTAGATCTAC ACGTTTTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGAGG CACAAAAATCTAAGAACATTCTAAGAACATACTAAGGCTTTGGAGACTTA AAAACATGCAATTTCTTAAGAAAGTACATCAAAATGCTCAAAAAATGCTG AAAATAAGAACATTTTAAGAACATTTTTAGGCATCAAATCCAAAAAACTA AGAAGATCCGAAGGCTTCGAAAATTTTTGACGTTCTTATAAAAAAAAAAG TGTAGATAACAAACTATCCACTAAAAGGTGCACAAAAAGCCCTTTATTCA AGTCATTCGTGAAATTATTTCATATAAAAAAAATAGAATTGAAACATTTT TACTGAGTCCTAATTGCCCTCCCCGATCTTAATTTACCGGGCATATAGGA CCCCGAAGGGTCTATATTTTCCGGGAAATCAGGACTTTAAAGTCCTAATC TCCTGGGTCTTAATTTACCGCGACACCGGGGGAAAGGTAATTCAAAAATA ACGATTCTACTTACTCTTTTCTTCAGGTATTCAGATACTAATTCATCTTC TAATAATTCATTCGATGATGCTAACAAGTTGCTGACGTCACGTTTCCCAC CGACAAGAACCGTATTAGGTGCTGTAATGCATTGTACGGAGTAGAAAATG GTTAATGTGAACATGGTGATTAATATAAAATGACTCATGGTTTGTTTGGT TAGTTTGTTTTGTTTTGTATACCTGAAAATGAACTGAAATCTATAACATG GTGAAAAATCAGAACTTAAAATTGGTGTTACATGTAAAATAAAAATGTTC TAAGTGGTTCGGGATAATTAGCCGATGAAAAGAATTTCATTTATCGTTCT TTTTTTTCAAAATCTCAAGCCTATTTTGGTGAAAAGAAATGTATGCTGAA TCGGTCACGGCTGAATTTGTCTCCATCTCATTACTGAAACCTCTTTAATT GGAAAGCACTTAATTACTCTCCCTTTACCTTCACAAAACCTAAAAACAGA CTCGAATCTCTTATAAACGTACCGTAAGGAACTTGGCAAGAGAAAAATTT ACCCGCACGTTTGCTTAGAGACTCGAAAGTATTCGAATTTGTTCATTTAT GTTCTCTACACGTTTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTC AATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTCTTACATGT TTCTAAACTTTTTGACATAATTAGCCTTGTTCTTATGAAAAAACGAATTG AAAAATGTTATTTTCTCATTCTCAGCCTCAGCATGTTTCTTAGATGTTTC TTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTA AAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034905XLOC_034905Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055473-exon-scaffold_253-1575043694:163097..163233TCONS_00055473-exon-scaffold_253-1575043694:163097..163233Clytia hemisphaericaexon
TCONS_00055473-exon-scaffold_253-1575043694:159243..159304TCONS_00055473-exon-scaffold_253-1575043694:159243..159304Clytia hemisphaericaexon
TCONS_00055473-exon-scaffold_253-1575043694:155079..155907TCONS_00055473-exon-scaffold_253-1575043694:155079..155907Clytia hemisphaericaexon
TCONS_00055473-exon-scaffold_253-1510915933:163097..163233TCONS_00055473-exon-scaffold_253-1510915933:163097..163233Clytia hemisphaericaexon
TCONS_00055473-exon-scaffold_253-1510915933:159243..159304TCONS_00055473-exon-scaffold_253-1510915933:159243..159304Clytia hemisphaericaexon
TCONS_00055473-exon-scaffold_253-1510915933:155079..155907TCONS_00055473-exon-scaffold_253-1510915933:155079..155907Clytia hemisphaericaexon
TCONS_00055473-exon-scaffold_253-1491911889:163097..163233TCONS_00055473-exon-scaffold_253-1491911889:163097..163233Clytia hemisphaericaexon
TCONS_00055473-exon-scaffold_253-1491911889:159243..159304TCONS_00055473-exon-scaffold_253-1491911889:159243..159304Clytia hemisphaericaexon
TCONS_00055473-exon-scaffold_253-1491911889:155079..155907TCONS_00055473-exon-scaffold_253-1491911889:155079..155907Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:155079..163233 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (6.36709 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.366534 0 0.684567 0.96666 6.36709 4.71128 1.26815 0 1.71326 0.881084 1.40567 1.36048 1.30844 0.906831 0.373618 2.09935 3.31103 1.95994 1.52634 3.5442 0.574634 1.12679 0.382172 0.983436 1.3205 1.99804 1.27526 1.14838 0.657222 0.851622
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
1002003004005006007008009001000Sequence
Match NameE-valueIdentityDescription
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