|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055473 ID=TCONS_00055473|Name=TCONS_00055473|organism=Clytia hemisphaerica|type=transcript|length=1028bp
GCTCTTTAAAAAGAATAGTTGGGTGATCAAAATGATGTAAACAAATCTGG
ACTTCATGACTTTATGACTtttaaaaatcactaaaatctcTGCATAAAAC
TGTCATCTGGACAAGCAACTTAAGTGAAACAAATGAGCGTGTTCTACATG
TTCATCCAATAATTCATGTCTCGAAGAATTGGCTTAATCAACAAAAAAGG
TATTCAGATACTAATTCATCTTCTAATAATTCATTCGATGATGCTAACAA
GTTGCTGACGTCACGTTTCCCACCGACAAGAACCGTATTAGGTGCTGTAA
TGCATTGTACGGAGTAGAAAATGGTTAATGTGAACATGGTGATTAATATA
AAATGACTCATGGTTTGTTTGgttagtttgttttgttttgtataCCTGAA
AATGAACTGAAATCTATAACATGGTGAAAAATCAGAACTTAAAATTGGTG
TTAcatgtaaaataaaaatgttctaaGTGGTTCGGGATAATTAGCCGATG
AAAAGAATTTCATTtatcgttcttttttttcaaaatctcaagcctatttt
ggtgaaaagaaATGTATGCTGAATCGGTCACGGCTGAATTTGTCTCCATC
TCATTACTGAAACCTCTTTAATTGGAAAGCACTTAATTACTCTCCCTTTA
CCTTCACAAAACCTAAAAACAGACTCGAATCTCTTATAAACGTACCGTAA
GGAACTTGGCAAGAGAAAAATTTACCCGCACGTTTGCTTAGAGACTCGAA
AGTATTCGAATTTGTTCATTTATGttctctacacgtttttttttttaaga
aactagttttaccaagcagcctcaatgtttcttaagaaatcggccttttg
agccttaaatgtttcttacatgtttctaaactttttgacataattagcct
tgttcttatgaaaaaacgaattgaaaaatgttattttctcattctcagcc
tcagcatgtttcttagatgtttcttagtttttaggcattctgagcctcat
gtttcttaaaagtgtgtttcttaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_253:155079..163233- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055473 ID=TCONS_00055473|Name=TCONS_00055473|organism=Clytia hemisphaerica|type=transcript|length=8155bp|location=Sequence derived from alignment at scaffold_253:155079..163233- (Clytia hemisphaerica)
GCTCTTTAAAAAGAATAGTTGGGTGATCAAAATGATGTAAACAAATCTGG
ACTTCATGACTTTATGACTTTTAAAAATCACTAAAATCTCTGCATAAAAC
TGTCATCTGGACAAGCAACTTAAGTGAAACAAATGAGGTAAGAACATAGA
TGTGTTATATTTAAAGAGCTCGATTTCTTTCTCTTATCTTTCTTTATATT
CTGAGGACTTTATCTCTTAAAAATATCTCTTTATTTCTTATCTTTATCTC
CTCTCTTTGATTTGTCAACTATTTTATTGATTTTGGATGAGGTTTTCAGT
ACAGTGACAACTTTTCTTTGTTGTACTCCTGGCATATTGATTGTAATTCT
ATATGACAATAACATTTAGCCTCTTTTCATTTTGGATTTCGCCTTGATAC
ACTCTGCACTGGTTCTAATTCTATTTCTATTTGTGACACTCTCAACCCAA
CCCTCCATTTTATCGTTAATCTTTTAACACAATTCTATTTGGTGCATTGA
TTGGTTACATTTTGAGTCTCATCATCGATCAAGGTTTTGGCAGGTGATGT
CATTTTTTGTTGAAGTTTGGTGGTTTTTCTCATTTTTTTGTAGATTTGTT
AAAATTTCTCCATTTTTTTAAAATCCGAAGTTTTATGACAACCGTTCTGC
TCTGACGTCAAGTAAAAATATCTTCAGCATGTCCCATATACTTTTAATGG
TACTGTAAGTTGGTCTAGTGTCAGCAACATTCCTCTTCTAATTTCAAAAT
CCTTCTTTAGAAATAGGAATAATAGGAAGGTCAGAATCACTGTTGGAATC
CCTCAACTGATTGCTATACCGACACTAAAGAAAATTAGTTTCAGCGATTC
CAACCTTCCTATTATTCCTATCTCTAAAGTTAAAGAAGATTGTCAAAATT
AGATGAGGGATGTCAACATTAGACTAACTTAAGGTATGTATTTCCACATG
GCAAATGCATCTTATTTTTCGAAAACCTCAAAACTGTACAAGTGACTCCT
CAAAAGTGGATGCCCAGGAAAAGTTTTCACATTATTTAATTTTATAGATT
TGAATCTTTGAGAACAAGGTGGATGTGCTTAAACCTAGCGTAGAAATTCA
GGCGTTAGAATGGTGATGCTCCTCTCTTCTTGAAAGCTTTGACTTACAGT
ACATCAATATCTTAATATCTGCTCCTTACGCCAATACACCAAAAGAAGTA
ATTACTCTTTCACTCTGAATATCTTTGGCGTACTGTACACCATTTCTAGA
CTGGCTTAATACTTAGGAGCTTAGTATCTCAGGATAAAAAAAGCCTCAAA
TTGTTCCAATAAGGCCTAGAACCCACTGAGCCCTACCAAAATTAAATAAT
ATAATGGCGATACTTTTGAGCAGGCTGGATACTTCTTTGCTGAGAATTAG
CACATTTGCTACTTTGATTTTTGGGGCGGGCTTGGAAAGTTCCCCTGAGG
AGGGGTTTTTTTGCTAGATATTTGAATTTTTGTAGAAATTTTGTGCATTT
TTTCCTTCTGTAAATTTGTGCAGGACCTATTGTTTTGTTTTTAGGCTTTG
GGATGAATTTCCCCCTATTTCTGGAATTTGGGGGGGGGCCTCAGGGTGCC
TGCATAGTTGTGATACATGGCTCCGACTGGGGTTCTAGGTCCCCCCGCTA
AATTTAGGTCCCCCCTAAGAACAAGGTCCCCCCCAGCCTGATAAAATTTT
AGGTCCCAGTATAATAGGGGAAAAATTTTTGATATATAATTTTTTTTCAA
TGTGAGTTTTTACCATTTAGTCNTGAAGACATAAAGGTTTTTTAGAGAAA
TTAAAAACAGTAAAGAAAAAAATTTAGGAAGTGTTATTTAGCCCCCACAG
TTACATAAAATTATGCAGGTCCCCCCCCCAAGATAGAGCTCCCCCCGCCT
GTCAGGCAAAAACAAACAGCTCCCACGTATATGGCAAATTTGAGGTGTAG
CTCCCCCAGCTCAGGCGGGGGGGGGGTGCGAGCCATGTGATATTTACCAG
TACCTTTGATCTGGAGTATATAAATTAGTGCAAGATCAAGAGGTTTCACA
TTTGACTCTAATTGTCTGTCCGTCTGATGTATCAATCAAGAATGTATTTT
GTCTAGTTAGAAGACACCTGGAAATATTCTTTCTGAGCTGTAAATTGAAA
TCATTCTATTCTATTTTTTTTTCGAAGACACCATCATGAGTTTTGATAAT
GACTTCAACAAATATGACTCAATCAATGTAACACTTTCAGATGTCTTGGA
TGTGAATCTTGGAGTACAATTGAAAGAAAAACAACAAATATTATCTACCA
GAGAGAAAAATTTTGATAAGGTTTTTGCACCTAGTACACCTGGCCTTGAG
ATTCGAGTTCCTTGTACAACACCAATTTCTGATGATGATTCTTCGGACTC
TTATGAAAGTGATGATGAAGGTTTAATACCAGTTCTTCCGTTTGTGATGG
TAAATAAAAGTCAGAAACATTTATCTCAAAATAACAAGATGATTTTAAAG
AAAATACATGAAAAAAACTTGTCCGTTTCTTCAAAAGCTATCAATGACAG
AGAACGTTTAACAGAAAAGCAAACGGCAAAAATTGCCAAATGTTCTACTA
TTGTTAAATGTAAATGTGAGTGTCACATTACAAAACCATCGAATGTGAAT
AAGAAGACCAACGAGTCATCTAAATCAAAAGAAATTCGTCCTTCATCAGC
TTTATCAACAAAGGAATTCACTTTTTCATTGCCCAATGAGCGACTGAATG
TAAGGAAACAAAATAAGCCTCCTATGATGAGAAGATCGTTTTCAAGTCAG
AATTTACGACCAACTAGTCACTATACGAAATATTCTTCAAATCGACCTTA
TTCTGCACTACCACGTACATCAGAAAAACCAAAACAGTTACTGATTCCAA
AAATATTGAACATTCAACCATCAGTTATGTTGAAAGGACATTCACTCCCA
GTTGGAAAACACACAGTCAAAACATTGAACTACATGCATCATCTTCATCA
GAGAGAGCGAACATTATCAAAAAAGATAAATCATCAACACAGTGAAATTG
AAATTTGTAAAACTAATAATAGTTTTGAGAGTTTAAGTATATCACCATCA
ACTAGAGCAAGTACTCTTAATACCAATAACGTAAAAGATAATTGTGACTT
GAATACAAACCAAGGTCATAGACTTTCTAAACATCAACTTGGAGAAGACA
TTCAGAATGTTGCTACAGTGAATGATTTCAATACTAATAAGGAACCACAA
GAGGAAGTTGTCGACCATTATTATGTGGAAAAGGACGAAAAACATTTCAA
ACAATTACCAATACAAAGATCTATCAAAAGTGCCAAGAAACAAGTTCAGT
TTAATACAAAACCACCAAGCTGAATTATGTTCAAAAATGATTAACCTCAC
TAATCATTGCTAACAGTTAATGGGTTTTGATGGACTATCGAGAATCAATA
ACAACTAACAAAATGTCCAAAGATTTAAATCAAGACTTAGTAAGTTTTAT
TTTGTCAATACTTACTATATACTAACTTTGAGCTCACATTGAGTCTTAAT
AAAAGTATAATTTGTTCATGGTATTTTAGCAGATTTTAACACGGGAAAAA
CAAGTGTGCAGTTTTCTTTCTATTTTTAGAAGAATGTTTAAAGTTCATCA
TAACTAAAACAACCAGAAGACTTGACCCGGTTAAAAACTTAAGTCAGTGG
AGATTGAATTAGGGAACCATATTATTTTGTTTTTAATAAGCGATTTCAAT
CAGTATAATTGTTTAAAACTTCAGCTCCGAGTTTTTGACCAATCAGTGAA
TTCCAGTCCAGTCCAGCTTTCACTTTTATAAGGAAGATAGTATTTTTAGT
GGTGATGGAGATTTTGCATAGGTCTTACCGGGTTTGACAGTTAAATGAAA
TTTAATAATTTATTGTTACTTTTTTTCAGCGTGTTCTACATGTTCATCCA
ATAATTCATGTCTCGAAGAATTGGCTTAATCAACAAAAAAGGTATATGAT
TCATCTTTTTGACTAAACCTTATTGTCGTCAAAGCAAATAGTTTCTATCA
AACATAGAGAATAATAGATTTAACATGTTCGTATTTGGAAAGCATAGAGA
TTTTATTTCTTCCCTCGAAAACCCATATTGGTGAGGTTAAGTAAATCGGT
AAAATCACGACGACGAACGAAAATTTAACAGGCTAGTGAGTTTCAACCAA
TCAAATTTCGTATTTTCACTAGCCTTTTACATTTTTGGTCCGTCGTCGTG
ATTATCCTTGTATGCTTAACTTCAGTATTGATTAAGATATGCACCACTGG
AGAGTCTTCCAAGAATTTTCAAAAATTCCACCCAATACGTCACTTTTTCT
ATTGTTTCTATTGTATTGGGTGAAAAATTTGAAAAGTTTTCAGAAGACTC
TCCAGTGGTGCATATCATAAATACCGTCAACTAAGGGGTCTCCACTTTAA
AAAGTCCTTCTCAACTGTCAACTATCAAAATAACATCACTCAACAAAAAT
TTTGAGCATAAACTTTCGTTCTCTTAAAAAAATGACCAGTGCTATGTGAT
ACATAAGTAAGAAGTAACTGAAAAATGTAATTATTTTATTTCCTTGAAGC
GAAGGTTCCAAATTCCTTTATCTTTGTTCATATCAATCACTATAGAGGCT
CACTAAAATAGCTTTTATTATACTTTTCCAGTTTTGACTTTTAACGGTAT
ATATACAAAATGTTATTGAGTGCTGCAATAAGACAATCGTCAATTATTTA
GATATTACTCTTAACCTTGAAGATGGTTCATTCAAGCCTTACCTGAAACC
AGACAACAAACTTCAATATATAAATACTCAATCAAACCACCCTCCAAACG
TGATCAGGCAAATACCCAAAACGATCGAACAACGACTGTCAAATCACTCA
TCCAACGAACATATCTTCACCGAAGCCAAAAAACCGTACGAGAAAGCGTT
GAAAGAAAGCGGCTACAACGTCGAACTTTCGTATAAGCCAACCAATCCAA
AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTGTATAGAAT
TTTTGACTGAAGATCGTGACGAAAAGTTGCGTGAAACTTTGAGTATCAAA
CAATTCTTATCTCAACTTCAATTTATTGTGTACAAAATGTTTACAAATTC
TAGTAACCTACAGTACATATTAAAACCAAAATCAATACATATGGCGACCA
CGTCTGAGTTTTTCATAATCATTCATGATGTCTACCAGTTGATGTTTTAA
ACTCTTCATCTCTCTAGTGACCTAGTAGAGAAAAAAAAGTAGTTTTTAAG
AAAAAAAAGCATGGATGAAGATTGGTTCTCTGAAGGTCTATTATTTTCTT
GCTAAAAATCACAGAAAGTTTAAACTTGAGTTTGTTAGTTCAAAGTAGAT
TTGGTTTGATTTGGTTGATTCATTCAAAGTACACGTTTTTTATAATAACA
TACTTTATAAGAACATGAGGCTTCGATGGCCAAAATATTGAAAACAAGCG
CAAGACAATTGAGACTTCACGATCTCCAAAATACCGGCAATTTTTTAGAT
AACTGCAGAAAAACACTCTCGAAATGGTGAAAATAAGAACATTTTAGGAA
CATTTTTATATAGGCTTAAATCTTAAAAAGTTAAGAACATCCGCAGGCTG
CAAAATTTTGAATGCTCTTATAAAAAAAAACATGTATACCCCACCCGTTA
ACGGTGTTGCGGTAAATTAAGACTCCGGGAGATTAGGACCTCAAAGTCAT
GATTTATGACTTCAAGAGCCCTGGCGAAATTCATTGGATTTTCGCCTTTT
TGTTGGTAAGGCGAGACCAAATTAATTTCGTAGTTTTCCCGGTTTTAGGA
AGGAAAATCTTTCTTTCATATTTTCTAGGGGTTTAACTTATAAGGAATAG
ATTTGCACTGTGTCAATGGAATAAGAATTAATCGACCTCTGCTAATTCCA
TACTATCCATTCATCATCATCATCATCATCCTTCGATCTATTAGATCTAC
ACGTTTTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGAGG
CACAAAAATCTAAGAACATTCTAAGAACATACTAAGGCTTTGGAGACTTA
AAAACATGCAATTTCTTAAGAAAGTACATCAAAATGCTCAAAAAATGCTG
AAAATAAGAACATTTTAAGAACATTTTTAGGCATCAAATCCAAAAAACTA
AGAAGATCCGAAGGCTTCGAAAATTTTTGACGTTCTTATAAAAAAAAAAG
TGTAGATAACAAACTATCCACTAAAAGGTGCACAAAAAGCCCTTTATTCA
AGTCATTCGTGAAATTATTTCATATAAAAAAAATAGAATTGAAACATTTT
TACTGAGTCCTAATTGCCCTCCCCGATCTTAATTTACCGGGCATATAGGA
CCCCGAAGGGTCTATATTTTCCGGGAAATCAGGACTTTAAAGTCCTAATC
TCCTGGGTCTTAATTTACCGCGACACCGGGGGAAAGGTAATTCAAAAATA
ACGATTCTACTTACTCTTTTCTTCAGGTATTCAGATACTAATTCATCTTC
TAATAATTCATTCGATGATGCTAACAAGTTGCTGACGTCACGTTTCCCAC
CGACAAGAACCGTATTAGGTGCTGTAATGCATTGTACGGAGTAGAAAATG
GTTAATGTGAACATGGTGATTAATATAAAATGACTCATGGTTTGTTTGGT
TAGTTTGTTTTGTTTTGTATACCTGAAAATGAACTGAAATCTATAACATG
GTGAAAAATCAGAACTTAAAATTGGTGTTACATGTAAAATAAAAATGTTC
TAAGTGGTTCGGGATAATTAGCCGATGAAAAGAATTTCATTTATCGTTCT
TTTTTTTCAAAATCTCAAGCCTATTTTGGTGAAAAGAAATGTATGCTGAA
TCGGTCACGGCTGAATTTGTCTCCATCTCATTACTGAAACCTCTTTAATT
GGAAAGCACTTAATTACTCTCCCTTTACCTTCACAAAACCTAAAAACAGA
CTCGAATCTCTTATAAACGTACCGTAAGGAACTTGGCAAGAGAAAAATTT
ACCCGCACGTTTGCTTAGAGACTCGAAAGTATTCGAATTTGTTCATTTAT
GTTCTCTACACGTTTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTC
AATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTCTTACATGT
TTCTAAACTTTTTGACATAATTAGCCTTGTTCTTATGAAAAAACGAATTG
AAAAATGTTATTTTCTCATTCTCAGCCTCAGCATGTTTCTTAGATGTTTC
TTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTA
AAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055473-exon-scaffold_253-1575043694:163097..163233 | TCONS_00055473-exon-scaffold_253-1575043694:163097..163233 | Clytia hemisphaerica | exon |
| TCONS_00055473-exon-scaffold_253-1575043694:159243..159304 | TCONS_00055473-exon-scaffold_253-1575043694:159243..159304 | Clytia hemisphaerica | exon |
| TCONS_00055473-exon-scaffold_253-1575043694:155079..155907 | TCONS_00055473-exon-scaffold_253-1575043694:155079..155907 | Clytia hemisphaerica | exon |
| TCONS_00055473-exon-scaffold_253-1510915933:163097..163233 | TCONS_00055473-exon-scaffold_253-1510915933:163097..163233 | Clytia hemisphaerica | exon |
| TCONS_00055473-exon-scaffold_253-1510915933:159243..159304 | TCONS_00055473-exon-scaffold_253-1510915933:159243..159304 | Clytia hemisphaerica | exon |
| TCONS_00055473-exon-scaffold_253-1510915933:155079..155907 | TCONS_00055473-exon-scaffold_253-1510915933:155079..155907 | Clytia hemisphaerica | exon |
| TCONS_00055473-exon-scaffold_253-1491911889:163097..163233 | TCONS_00055473-exon-scaffold_253-1491911889:163097..163233 | Clytia hemisphaerica | exon |
| TCONS_00055473-exon-scaffold_253-1491911889:159243..159304 | TCONS_00055473-exon-scaffold_253-1491911889:159243..159304 | Clytia hemisphaerica | exon |
| TCONS_00055473-exon-scaffold_253-1491911889:155079..155907 | TCONS_00055473-exon-scaffold_253-1491911889:155079..155907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:155079..163233 - |
Blast
The following BLAST results are available for this feature:
|
