TCONS_00055487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055487
Unique NameTCONS_00055487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055487 ID=TCONS_00055487|Name=TCONS_00055487|organism=Clytia hemisphaerica|type=transcript|length=1559bp
TCGagttcaaaaacttttttattgcaTGTTTTCTCAAACCAattgaattt
tatgtttcacCATAAAATTCAGGTTGTGTATCGCAAAACCACTGAGAAGT
TACAGGCAGTTTGCAGCAGCCTATCAGAGTAGAAAGTTTTTATTGATGTT
TGTGTTATATAAAAGACTACACTATATTCTAGGAGATAATGAGGGAAAGA
AAGCTTAGAGTGAGGCTTGAATTAGTATTAAAATCGACTTTTAAAACACC
AGTAGGAGATAAGAAAATCAATTTCTCCTAAAATACGTCTCATTTTTTAA
TCTTCTCTTTTGACAGAGCTAAAGATAATCTTGTACTAATTATTTCTGTC
CAGTGAGTTCTTCTGAAAAATGGGAAAACAAAACAGTAAACTGAAGCCAG
AAATTATTAATGATCTTATCGAACAAACAGAATTTACTGAGCACGAACTC
CAAGACTGGTACAAAGGTTTCTTGAAGGACTGCCCAGATGGTACTTTAAC
TGTTGAAgaattcaaaaagatttatgGGAACTTCTTTCCATACGGTGATG
CAGCCAAGTTTGCAGAACACGTCTTCAGAACCTTTGATGCAAACGGTGAT
GGTAGAATAGACTTTCGAGAATTCATTTGTGCTCTTTCCGTCACTAGCCG
AGGTACTTTGGAACAGAAACTGAAATGGGCTTTCTCTATGTATGATTTAG
ATGGAAACGGTGATATTTCCCGCGAAGAAATGTTAGAAATCGTTCGCGCC
ATTTACAAAATGGTCGGTAATGTCGTCAAAATGCCGGAAGACGAAAGTAC
GCCTGAGAAGCGAGTGGAGAAAATCTTTAGACAAATGGATAAAAATACGG
ACGGTAAATTGTCGTTACCTGAGTTTATTGAAGGTGCAAAATCTGACCCA
TCCATTGTCCGACTATTACAATGCAATCCGGACACTGGTGCAAGTCGCTG
ATTGGCTGATTTCATCATAACGAGTATTTTATTTGTCTTTTTGTTATTTG
TTGATTTTCAAGACCATGTATAAATGGAATGTTGAGTGGAGGTCGTTGAA
TAAGCTGCAAAGCATCCAAACAATCCAAGGGGACCTTATAGTATATTTAC
CACAATAGAATGGAACAATTATTGCATTTCGGGAATATCATCTTCAGTAT
TGTAGTAGGAGCAGTGGGAATCAAAAACACATTTTCTGAAGAAAATTATA
TATTTAGTGTTAGTTAGTTTCAAAAGCATtgaattttaactttttgattt
cattttttccaacagaataattttcttttcaaatttagcTAGGCGTGCAC
AGATGAAAGTTTCTGATCGAttaaattttattatattttttgatttttcc
ctcTCTGAATCGCCAGTTCGTTCACCGTCagtttaatatttatttttatg
caATCAATCAGTGCAAGTAGCTTACCCTACATTATCATTATGTCTTTaaa
aagaagtttttcttttccaaaatatttcgttcaataattttttaaaactt
gtaCTTAGTGTGAGTTATGGATTCAATtatttgtttacaaaatattttca
ttgctGTCA
Run BLAST on NCBI

protein sequence of TCONS_00055487-protein

>TCONS_00055487-protein ID=TCONS_00055487-protein|Name=TCONS_00055487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MGKQNSKLKPEIINDLIEQTEFTEHELQDWYKGFLKDCPDGTLTVEEFKK
IYGNFFPYGDAAKFAEHVFRTFDANGDGRIDFREFICALSVTSRGTLEQK
LKWAFSMYDLDGNGDISREEMLEIVRAIYKMVGNVVKMPEDESTPEKRVE
KIFRQMDKNTDGKLSLPEFIEGAKSDPSIVRLLQCNPDTGASR
Run BLAST on NCBI

transcript from alignment at scaffold_253:299374..301850-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055487 ID=TCONS_00055487|Name=TCONS_00055487|organism=Clytia hemisphaerica|type=transcript|length=2477bp|location=Sequence derived from alignment at scaffold_253:299374..301850- (Clytia hemisphaerica)
TCGAGTTCAAAAACTTTTTTATTGCATGTTTTCTCAAACCAATTGAATTT
TATGTTTCACCATAAAATTCAGGTTGTGTATCGCAAAACCACTGAGAAGT
TACAGGCAGTTTGCAGCAGCCTATCAGAGTAGAAAGTTTTTATTGATGTT
TGTGTTATATAAAAGACTACACTATATTCTAGGAGATAATGAGGGAAAGA
AAGCTTAGAGTGAGGCTTGAATTAGTATTAAAATCGACTTTTAAAACACC
AGTAGGAGATAAGAAAATCAATTTCTCCTAAAATACGTCTCATTTTTTAA
TCTTCTCTTTTGACAGAGCTAAAGATAATCTTGTACTAATTATTTCTGTC
CAGTGAGTTCTTCTGAAAAATGGGAAAACAAAACAGTAAACTGAAGCCAG
AAATTATTAATGATCTTATCGAACAAACAGAATTTACTGAGCACGAACTC
CAAGACTGGTACAAAGGTGGGTATTTATCATTTTTCTTCATCACTGTCTT
ACTGGGCCGGCTAGAATGTTCAGCAACTAAGTAGCCAAATGCAGATCGGA
TAAACCTCTTCTATGGCTTTGGAATTTTAATCTTGTTACACTTTATAAAA
ACCAGTACAATTTTGTTGAGGCTCGACTGTTCCTTTTTTCGTGGTTAACC
TGAAAGAATTACTGTCTTGTTATTGTTTTTAGCACAAAGTTATTATGATT
TTGGTTACTTTAACTCTTTTTTTTTTTGCATTTTTGAGCCTCGTTGTTTT
TATAAAATTGGTCTAAGAAAAAAGTGTATTCATAAAACTCCAGATGAGAT
GGCCTTAATGTCTTAAAATGTTTTTCTGGCTTTCCCGGTGGAGAGGGTTT
TTTGCTTTAGTTTATTTATCTGTCATATCGTTTACATGGGGTGAAGAATT
GCATCGTTTCTTAGAAATAACTCTCAAACTTCTATTTTGTTGTTAGTTGG
AAAGCTGACAAAGTCGTGGTTTCTTGGTAGTTTTTGATGCTTTATTAAAA
CTAATCAAAAGCTTTTCAAATTTAGACCCATGGGAATCAATAATAAACCA
CTGCCTGCTATTTCTCACTTCCTCTGATTCAATCTTTTAAATCTATAATC
AATATTTTGCTCTTTCTTTCGACCATAGGTTTCTTGAAGGACTGCCCAGA
TGGTACTTTAACTGTTGAAGAATTCAAAAAGATTTATGGGAACTTCTTTC
CATACGGTGATGCAGCCAAGTTTGCAGAACACGTCTTCAGAACCTTTGAT
GCAAACGGTGATGGTAGAATAGACTTTCGAGAATTCATTTGTGCTCTTTC
CGTCACTAGCCGAGGTACTTTGGAACAGAAACTGAAATGGGCTTTCTCTA
TGTATGATTTAGATGGAAACGGGTAAGTTTTTCTATTACTACTTTCTCTT
GTTATAAACTAATGGATCAGATTTTCAATAATTTTGAAACGATTTTCTTC
AGCTTTTTCGTTGTCTGACAACCTTGTAAAATGTTTTTTGCAAAGATGAA
ATTTAATTTGATGTGAACAAAGTTATCATAATTATAAATCTAATTTTATC
TGGTTCCTTTNTGAAATTTGATTTGATGTGAACAAAACTATCATAATTAT
AAATCTAATTTCATCTTGTTCCTTCTAGTGATATTTCCCGCGAAGAAATG
TTAGAAATCGTTCGCGCCATTTACAAAATGGTCGGTAATGTCGTCAAAAT
GCCGGAAGACGAAAGTACGCCTGAGAAGCGAGTGGAGAAAATCTTTAGAC
AAATGGATAAAAATACGGACGGTAAATTGTCGTTACCTGAGTTTATTGAA
GGTGCAAAATCTGACCCATCCATTGTCCGACTATTACAATGCAATCCGGA
CACTGGTGCAAGTCGCTGATTGGCTGATTTCATCATAACGAGTATTTTAT
TTGTCTTTTTGTTATTTGTTGATTTTCAAGACCATGTATAAATGGAATGT
TGAGTGGAGGTCGTTGAATAAGCTGCAAAGCATCCAAACAATCCAAGGGG
ACCTTATAGTATATTTACCACAATAGAATGGAACAATTATTGCATTTCGG
GAATATCATCTTCAGTATTGTAGTAGGAGCAGTGGGAATCAAAAACACAT
TTTCTGAAGAAAATTATATATTTAGTGTTAGTTAGTTTCAAAAGCATTGA
ATTTTAACTTTTTGATTTCATTTTTTCCAACAGAATAATTTTCTTTTCAA
ATTTAGCTAGGCGTGCACAGATGAAAGTTTCTGATCGATTAAATTTTATT
ATATTTTTTGATTTTTCCCTCTCTGAATCGCCAGTTCGTTCACCGTCAGT
TTAATATTTATTTTTATGCAATCAATCAGTGCAAGTAGCTTACCCTACAT
TATCATTATGTCTTTAAAAAGAAGTTTTTCTTTTCCAAAATATTTCGTTC
AATAATTTTTTAAAACTTGTACTTAGTGTGAGTTATGGATTCAATTATTT
GTTTACAAAATATTTTCATTGCTGTCA

Coding sequence (CDS) from alignment at scaffold_253:299374..301850-

>TCONS_00055487 ID=TCONS_00055487|Name=TCONS_00055487|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_253:299374..301850- (Clytia hemisphaerica)
TGATATTTCCCGCGAAGAAATGTTAGAAATCGTTCGCGCCATTTACAAAA
TGGTCGGTAATGTCGTCAAAATGCCGGAAGACGAAAGTACGCCTGAGAAG
CGAGTGGAGAAAATCTTTAGACAAATGGATAAAAATACGGACGGTAAATT
GTCGTTACCTGAGTTTATTGAAGGTGCAAAATCTGACCCATCCATTGTCC
GACTATTACAATGCAATCCGGACACTGGTGCAAGTCGCTGAGTTTCTTGA
AGGACTGCCCAGATGGTACTTTAACTGTTGAAGAATTCAAAAAGATTTAT
GGGAACTTCTTTCCATACGGTGATGCAGCCAAGTTTGCAGAACACGTCTT
CAGAACCTTTGATGCAAACGGTGATGGTAGAATAGACTTTCGAGAATTCA
TTTGTGCTCTTTCCGTCACTAGCCGAGGTACTTTGGAACAGAAACTGAAA
TGGGCTTTCTCTATGTATGATTTAGATGGAAACGGATGGGAAAACAAAAC
AGTAAACTGAAGCCAGAAATTATTAATGATCTTATCGAACAAACAGAATT
TACTGAGCACGAACTCCAAGACTGGTACAAAGTGATATTTCCCGCGAAGA
AATGTTAGAAATCGTTCGCGCCATTTACAAAATGGTCGGTAATGTCGTCA
AAATGCCGGAAGACGAAAGTACGCCTGAGAAGCGAGTGGAGAAAATCTTT
AGACAAATGGATAAAAATACGGACGGTAAATTGTCGTTACCTGAGTTTAT
TGAAGGTGCAAAATCTGACCCATCCATTGTCCGACTATTACAATGCAATC
CGGACACTGGTGCAAGTCGCTGAGTTTCTTGAAGGACTGCCCAGATGGTA
CTTTAACTGTTGAAGAATTCAAAAAGATTTATGGGAACTTCTTTCCATAC
GGTGATGCAGCCAAGTTTGCAGAACACGTCTTCAGAACCTTTGATGCAAA
CGGTGATGGTAGAATAGACTTTCGAGAATTCATTTGTGCTCTTTCCGTCA
CTAGCCGAGGTACTTTGGAACAGAAACTGAAATGGGCTTTCTCTATGTAT
GATTTAGATGGAAACGGATGGGAAAACAAAACAGTAAACTGAAGCCAGAA
ATTATTAATGATCTTATCGAACAAACAGAATTTACTGAGCACGAACTCCA
AGACTGGTACAAAGTGATATTTCCCGCGAAGAAATGTTAGAAATCGTTCG
CGCCATTTACAAAATGGTCGGTAATGTCGTCAAAATGCCGGAAGACGAAA
GTACGCCTGAGAAGCGAGTGGAGAAAATCTTTAGACAAATGGATAAAAAT
ACGGACGGTAAATTGTCGTTACCTGAGTTTATTGAAGGTGCAAAATCTGA
CCCATCCATTGTCCGACTATTACAATGCAATCCGGACACTGGTGCAAGTC
GCTGAGTTTCTTGAAGGACTGCCCAGATGGTACTTTAACTGTTGAAGAAT
TCAAAAAGATTTATGGGAACTTCTTTCCATACGGTGATGCAGCCAAGTTT
GCAGAACACGTCTTCAGAACCTTTGATGCAAACGGTGATGGTAGAATAGA
CTTTCGAGAATTCATTTGTGCTCTTTCCGTCACTAGCCGAGGTACTTTGG
AACAGAAACTGAAATGGGCTTTCTCTATGTATGATTTAGATGGAAACGGA
TGGGAAAACAAAACAGTAAACTGAAGCCAGAAATTATTAATGATCTTATC
GAACAAACAGAATTTACTGAGCACGAACTCCAAGACTGGTACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034910XLOC_034910Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055487-proteinTCONS_00055487-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055487-exon-scaffold_253-1575043694:301385..301850TCONS_00055487-exon-scaffold_253-1575043694:301385..301850Clytia hemisphaericaexon
TCONS_00055487-exon-scaffold_253-1575043694:300479..300722TCONS_00055487-exon-scaffold_253-1575043694:300479..300722Clytia hemisphaericaexon
TCONS_00055487-exon-scaffold_253-1575043694:299374..300222TCONS_00055487-exon-scaffold_253-1575043694:299374..300222Clytia hemisphaericaexon
TCONS_00055487-exon-scaffold_253-1510915933:301385..301850TCONS_00055487-exon-scaffold_253-1510915933:301385..301850Clytia hemisphaericaexon
TCONS_00055487-exon-scaffold_253-1510915933:300479..300722TCONS_00055487-exon-scaffold_253-1510915933:300479..300722Clytia hemisphaericaexon
TCONS_00055487-exon-scaffold_253-1510915933:299374..300222TCONS_00055487-exon-scaffold_253-1510915933:299374..300222Clytia hemisphaericaexon
TCONS_00055487-exon-scaffold_253-1491911889:301385..301850TCONS_00055487-exon-scaffold_253-1491911889:301385..301850Clytia hemisphaericaexon
TCONS_00055487-exon-scaffold_253-1491911889:300479..300722TCONS_00055487-exon-scaffold_253-1491911889:300479..300722Clytia hemisphaericaexon
TCONS_00055487-exon-scaffold_253-1491911889:299374..300222TCONS_00055487-exon-scaffold_253-1491911889:299374..300222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:299374..301850 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
306.528	313.52	402.441	419.489	74.778	62.0591	227.25	244.918	310.701	298.447	220.588	236.665	325.683	298.039	172.699	193.115	305.905	349.394	308.414	345.067	337.404	329.866	228.792	224.661	263.222	265.238	190.336	143.254	114.749	106.926
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00055487 vs. Swiss-Prot (Human)
Match: NCALD (Neurocalcin-delta OS=Homo sapiens GN=NCALD PE=1 SV=2)

HSP 1 Score: 335.88 bits (860), Expect = 1.131e-112
Identity = 156/191 (81.68%), Postives = 173/191 (90.58%), Query Frame = 1 
Query:  370 MGKQNSKLKPEIINDLIEQTEFTEHELQDWYKGFLKDCPDGTLTVEEFKKIYGNFFPYGDAAKFAEHVFRTFDANGDGRIDFREFICALSVTSRGTLEQKLKWAFSMYDLDGNGDISREEMLEIVRAIYKMVGNVVKMPEDESTPEKRVEKIFRQMDKNTDGKLSLPEFIEGAKSDPSIVRLLQCNPDTGA 942
            MGKQNSKL+PE++ DL+E T+FTEHE+Q+WYKGFL+DCP G L++EEFKKIYGNFFPYGDA+KFAEHVFRTFDANGDG IDFREFI ALSVTSRG LEQKLKWAFSMYDLDGNG IS+ EMLEIV+AIYKMV +V+KMPEDESTPEKR EKIFRQMD N DGKLSL EFI GAKSDPSIVRLLQC+P +  
Sbjct:    1 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAG 191
The following BLAST results are available for this feature:
BLAST of TCONS_00055487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCALD1.131e-11281.68Neurocalcin-delta OS=Homo sapiens GN=NCALD PE=1 SV... [more]
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