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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055550 ID=TCONS_00055550|Name=TCONS_00055550|organism=Clytia hemisphaerica|type=transcript|length=1684bp
ATAGTTTGTCATTTCGAAGTTGACATCGAATCGAGAAAGTAATCGAACAA
ATTTTGActgatattatttattttttgatgaatcGATAATCGATACGGTA
GCAATGCCTCGATCATTTTTAATCAAGAAACCGCCAAAGATTCATTACAA
AGGATACACGGATATCACTGAAGatGAAGAGACCGCTTACTATTCACCTC
TCTCACCTACCTATCCGAAACAAGCATCATCGTCATCATCCACACTCGAA
AGCAATTTGCAAGCTTTACAAAAAGCAAACGAATTGTTGAAGAACTCTTT
GACAAGTCTTCCAAGAAAAGATTTCATCTTCCAAAAAGTGCTTGCAGAAT
CCCAATGTAATACCATGCAAATCTTAACGAGTTTGGAATGTAACGATGAA
CCAATTATTCCATCACCTACCGACACTTACTCTTCAAATTCCTCAGCCGT
CTCATCTGAACCGGATATTCAACTCCGCGGAAACAACCAATCACTGACAG
ATAAGGAAAAGGAGATTTCATACTGGTTGCACACAAGCCGTAAAGAACAT
TATTCACAAACCGATCaaaagaaaatcacaaaaagtcGATCTTCATCAAC
ATCCGACCCAACCAAAGTCTTCCCTTGTCACATTTGCGGTAAAGTTTTCA
ACGCCCATTACAACCTGACACGCCATCTACCAGTCCATACGGGCGCCCGC
CCTTTCAAGTGTAAGATATGTGGCAAAGGTTTCCGCCAAGCAAGCACGTT
GTGTAGACATAAGATTATACATACTCAAGAACGCCCTCATAAGTGCCAAG
AATGTGGCAAATCTTTCAACCGGTCTTCTACATTGAACACTCATATGCGA
ATCCATCTCGGCTACAAACCCTTTATCTGTACAATCTGCAATAAAGGTTT
TCACCAGAAAGGCAATTATAAAAATCATCTATTGACACATTCTCAAGTTA
AGCCGTATAAATGTACAATCTGTTCGAAATCCTTCCATCAAGTTTACAAT
CTGACCTTTCATATGTATACACATAATGATAAGAAGCCGTATTATTGCCA
GTATTGTCAAAAAGGATTCTGTCGGAACTTTGATCTCAAGAAACATATTC
GCAAGATTCATTCTAAGGATTTACCGGTAATGAAGGCACCAGTGATCATT
GGTGATCAGCCAAGGATAATGGAAATTCGCACGtgataaaaaaatgactt
tttgtgTTTGAAAATTGACGGTTTATTTTGTTACGtctttttatgtttga
ttttaagaatttcttaaagttttgaatttttgtaaatatattgTTTTGTA
TCTATTTGAATTAAATTAAGTTGCaatttttgatttcatatcacatcaat
ttatatattgtaaatatttttgaatgtgAAATCTTTATTTATGGTTTGAT
TGTTAATTAATCTAATTTTGTTAAATCTTTTAATTTAAATTCACCGAGTG
ATTTTACGGACCTCTATTTTTTACCACCCCCTGAAGACTTTTGGTTAGCT
AATTTTAAAGATTTTTTGCGGCTATTTTGCTAGCAGGTGAAGTTCAAATA
AAGTGTCTTAAAGTGCTTTTTTTACAAATTTTTATTTAATATTAAATAAA
CATGTGTTTATATATCAAAAGTTTTATTCTTAAAAACTAATAAAATTTAT
AAAATATTAACAAGGAACATGATTAAAATTGAAC Run BLAST on NCBI protein sequence of TCONS_00055550-protein >TCONS_00055550-protein ID=TCONS_00055550-protein|Name=TCONS_00055550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MPRSFLIKKPPKIHYKGYTDITEDEETAYYSPLSPTYPKQASSSSSTLES
NLQALQKANELLKNSLTSLPRKDFIFQKVLAESQCNTMQILTSLECNDEP
IIPSPTDTYSSNSSAVSSEPDIQLRGNNQSLTDKEKEISYWLHTSRKEHY
SQTDQKKITKSRSSSTSDPTKVFPCHICGKVFNAHYNLTRHLPVHTGARP
FKCKICGKGFRQASTLCRHKIIHTQERPHKCQECGKSFNRSSTLNTHMRI
HLGYKPFICTICNKGFHQKGNYKNHLLTHSQVKPYKCTICSKSFHQVYNL
TFHMYTHNDKKPYYCQYCQKGFCRNFDLKKHIRKIHSKDLPVMKAPVIIG
DQPRIMEIRT Run BLAST on NCBI transcript from alignment at scaffold_253:996042..997961- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055550 ID=TCONS_00055550|Name=TCONS_00055550|organism=Clytia hemisphaerica|type=transcript|length=1920bp|location=Sequence derived from alignment at scaffold_253:996042..997961- (Clytia hemisphaerica)
ATAGTTTGTCATTTCGAAGTTGACATCGAATCGAGAAAGTAATCGAACAA
ATTTTGACTGATATTATTTATTTTTTGATGAATCGATAATCGATACGGTA
GCAATGCCTCGATCATTTTTAATCAAGAAACCGCCAAAGATTCATTACAA
AGGATACACGGATATCACTGAAGGTATGTGCAAGTTTATCCCCATCAAAA
CACTAACATGTCACTTAAAAGTCTATCGCCTTTGACTGATCTCATTTTAT
CTGAACTATAAGACGAGACTAAGTTTGCGTTCTGCTCTTCTCGCCTTTTA
ATACCGGGAATTCTGCAATAGCAAGCTCTATACTTAGGCTTAGCCGTTGT
AGATCTTCTTTCATAAGAATATGGAACGCAGTTGAACGGAATTTTATTTT
AACTTTTAGATGAAGAGACCGCTTACTATTCACCTCTCTCACCTACCTAT
CCGAAACAAGCATCATCGTCATCATCCACACTCGAAAGCAATTTGCAAGC
TTTACAAAAAGCAAACGAATTGTTGAAGAACTCTTTGACAAGTCTTCCAA
GAAAAGATTTCATCTTCCAAAAAGTGCTTGCAGAATCCCAATGTAATACC
ATGCAAATCTTAACGAGTTTGGAATGTAACGATGAACCAATTATTCCATC
ACCTACCGACACTTACTCTTCAAATTCCTCAGCCGTCTCATCTGAACCGG
ATATTCAACTCCGCGGAAACAACCAATCACTGACAGATAAGGAAAAGGAG
ATTTCATACTGGTTGCACACAAGCCGTAAAGAACATTATTCACAAACCGA
TCAAAAGAAAATCACAAAAAGTCGATCTTCATCAACATCCGACCCAACCA
AAGTCTTCCCTTGTCACATTTGCGGTAAAGTTTTCAACGCCCATTACAAC
CTGACACGCCATCTACCAGTCCATACGGGCGCCCGCCCTTTCAAGTGTAA
GATATGTGGCAAAGGTTTCCGCCAAGCAAGCACGTTGTGTAGACATAAGA
TTATACATACTCAAGAACGCCCTCATAAGTGCCAAGAATGTGGCAAATCT
TTCAACCGGTCTTCTACATTGAACACTCATATGCGAATCCATCTCGGCTA
CAAACCCTTTATCTGTACAATCTGCAATAAAGGTTTTCACCAGAAAGGCA
ATTATAAAAATCATCTATTGACACATTCTCAAGTTAAGCCGTATAAATGT
ACAATCTGTTCGAAATCCTTCCATCAAGTTTACAATCTGACCTTTCATAT
GTATACACATAATGATAAGAAGCCGTATTATTGCCAGTATTGTCAAAAAG
GATTCTGTCGGAACTTTGATCTCAAGAAACATATTCGCAAGATTCATTCT
AAGGATTTACCGGTAATGAAGGCACCAGTGATCATTGGTGATCAGCCAAG
GATAATGGAAATTCGCACGTGATAAAAAAATGACTTTTTGTGTTTGAAAA
TTGACGGTTTATTTTGTTACGTCTTTTTATGTTTGATTTTAAGAATTTCT
TAAAGTTTTGAATTTTTGTAAATATATTGTTTTGTATCTATTTGAATTAA
ATTAAGTTGCAATTTTTGATTTCATATCACATCAATTTATATATTGTAAA
TATTTTTGAATGTGAAATCTTTATTTATGGTTTGATTGTTAATTAATCTA
ATTTTGTTAAATCTTTTAATTTAAATTCACCGAGTGATTTTACGGACCTC
TATTTTTTACCACCCCCTGAAGACTTTTGGTTAGCTAATTTTAAAGATTT
TTTGCGGCTATTTTGCTAGCAGGTGAAGTTCAAATAAAGTGTCTTAAAGT
GCTTTTTTTACAAATTTTTATTTAATATTAAATAAACATGTGTTTATATA
TCAAAAGTTTTATTCTTAAAAACTAATAAAATTTATAAAATATTAACAAG
GAACATGATTAAAATTGAAC Coding sequence (CDS) from alignment at scaffold_253:996042..997961- >TCONS_00055550 ID=TCONS_00055550|Name=TCONS_00055550|organism=Clytia hemisphaerica|type=CDS|length=2166bp|location=Sequence derived from alignment at scaffold_253:996042..997961- (Clytia hemisphaerica)
ATGAAGAGACCGCTTACTATTCACCTCTCTCACCTACCTATCCGAAACAA
GCATCATCGTCATCATCCACACTCGAAAGCAATTTGCAAGCTTTACAAAA
AGCAAACGAATTGTTGAAGAACTCTTTGACAAGTCTTCCAAGAAAAGATT
TCATCTTCCAAAAAGTGCTTGCAGAATCCCAATGTAATACCATGCAAATC
TTAACGAGTTTGGAATGTAACGATGAACCAATTATTCCATCACCTACCGA
CACTTACTCTTCAAATTCCTCAGCCGTCTCATCTGAACCGGATATTCAAC
TCCGCGGAAACAACCAATCACTGACAGATAAGGAAAAGGAGATTTCATAC
TGGTTGCACACAAGCCGTAAAGAACATTATTCACAAACCGATCAAAAGAA
AATCACAAAAAGTCGATCTTCATCAACATCCGACCCAACCAAAGTCTTCC
CTTGTCACATTTGCGGTAAAGTTTTCAACGCCCATTACAACCTGACACGC
CATCTACCAGTCCATACGGGCGCCCGCCCTTTCAAGTGTAAGATATGTGG
CAAAGGTTTCCGCCAAGCAAGCACGTTGTGTAGACATAAGATTATACATA
CTCAAGAACGCCCTCATAAGTGCCAAGAATGTGGCAAATCTTTCAACCGG
TCTTCTACATTGAACACTCATATGCGAATCCATCTCGGCTACAAACCCTT
TATCTGTACAATCTGCAATAAAGGTTTTCACCAGAAAGGCAATTATAAAA
ATCATCTATTGACACATTCTCAAGTTAAGCCGTATAAATGTACAATCTGT
TCGAAATCCTTCCATCAAGTTTACAATCTGACCTTTCATATGTATACACA
TAATGATAAGAAGCCGTATTATTGCCAGTATTGTCAAAAAGGATTCTGTC
GGAACTTTGATCTCAAGAAACATATTCGCAAGATTCATTCTAAGGATTTA
CCGGTAATGAAGGCACCAGTGATCATTGGTGATCAGCCAAGGATAATGGA
AATTCGCACGTGAATGCCTCGATCATTTTTAATCAAGAAACCGCCAAAGA
TTCATTACAAAGGATACACGGATATCACTGAAGATGAAGAGACCGCTTAC
TATTCACCTCTCTCACCTACCTATCCGAAACAAGCATCATCGTCATCATC
CACACTCGAAAGCAATTTGCAAGCTTTACAAAAAGCAAACGAATTGTTGA
AGAACTCTTTGACAAGTCTTCCAAGAAAAGATTTCATCTTCCAAAAAGTG
CTTGCAGAATCCCAATGTAATACCATGCAAATCTTAACGAGTTTGGAATG
TAACGATGAACCAATTATTCCATCACCTACCGACACTTACTCTTCAAATT
CCTCAGCCGTCTCATCTGAACCGGATATTCAACTCCGCGGAAACAACCAA
TCACTGACAGATAAGGAAAAGGAGATTTCATACTGGTTGCACACAAGCCG
TAAAGAACATTATTCACAAACCGATCAAAAGAAAATCACAAAAAGTCGAT
CTTCATCAACATCCGACCCAACCAAAGTCTTCCCTTGTCACATTTGCGGT
AAAGTTTTCAACGCCCATTACAACCTGACACGCCATCTACCAGTCCATAC
GGGCGCCCGCCCTTTCAAGTGTAAGATATGTGGCAAAGGTTTCCGCCAAG
CAAGCACGTTGTGTAGACATAAGATTATACATACTCAAGAACGCCCTCAT
AAGTGCCAAGAATGTGGCAAATCTTTCAACCGGTCTTCTACATTGAACAC
TCATATGCGAATCCATCTCGGCTACAAACCCTTTATCTGTACAATCTGCA
ATAAAGGTTTTCACCAGAAAGGCAATTATAAAAATCATCTATTGACACAT
TCTCAAGTTAAGCCGTATAAATGTACAATCTGTTCGAAATCCTTCCATCA
AGTTTACAATCTGACCTTTCATATGTATACACATAATGATAAGAAGCCGT
ATTATTGCCAGTATTGTCAAAAAGGATTCTGTCGGAACTTTGATCTCAAG
AAACATATTCGCAAGATTCATTCTAAGGATTTACCGGTAATGAAGGCACC
AGTGATCATTGGTGATCAGCCAAGGATAATGGAAATTCGCACGTGAATGC
CTCGATCATTTTTAATCAAGAAACCGCCAAAGATTCATTACAAAGGATAC
ACGGATATCACTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055550-exon-scaffold_253-1575043694:997789..997961 | TCONS_00055550-exon-scaffold_253-1575043694:997789..997961 | Clytia hemisphaerica | exon |
| TCONS_00055550-exon-scaffold_253-1575043694:996042..997552 | TCONS_00055550-exon-scaffold_253-1575043694:996042..997552 | Clytia hemisphaerica | exon |
| TCONS_00055550-exon-scaffold_253-1510915933:997789..997961 | TCONS_00055550-exon-scaffold_253-1510915933:997789..997961 | Clytia hemisphaerica | exon |
| TCONS_00055550-exon-scaffold_253-1510915933:996042..997552 | TCONS_00055550-exon-scaffold_253-1510915933:996042..997552 | Clytia hemisphaerica | exon |
| TCONS_00055550-exon-scaffold_253-1491911889:997789..997961 | TCONS_00055550-exon-scaffold_253-1491911889:997789..997961 | Clytia hemisphaerica | exon |
| TCONS_00055550-exon-scaffold_253-1491911889:996042..997552 | TCONS_00055550-exon-scaffold_253-1491911889:996042..997552 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:996042..997961 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00055550 vs. Swiss-Prot (Human)
Match: FEZF2 (Fez family zinc finger protein 2 OS=Homo sapiens GN=FEZF2 PE=2 SV=2) HSP 1 Score: 305.449 bits (781), Expect = 1.552e-96 Identity = 135/170 (79.41%), Postives = 149/170 (87.65%), Query Frame = 2
Query: 620 FPCHICGKVFNAHYNLTRHLPVHTGARPFKCKICGKGFRQASTLCRHKIIHTQERPHKCQECGKSFNRSSTLNTHMRIHLGYKPFICTICNKGFHQKGNYKNHLLTHSQVKPYKCTICSKSFHQVYNLTFHMYTHNDKKPYYCQYCQKGFCRNFDLKKHIRKIHSKDLPV 1129
F C +CGKVFNAHYNLTRH+PVHTGARPF CK+CGKGFRQASTLCRHKIIHTQE+PHKC +CGK+FNRSSTLNTH+RIH GYKPF+C C KGFHQKGNYKNH LTHS K YKCTIC+K+FHQVYNLTFHM+THNDKKP+ C C KGFCRNFDLKKH+RK+H P
Sbjct: 277 FTCEVCGKVFNAHYNLTRHMPVHTGARPFVCKVCGKGFRQASTLCRHKIIHTQEKPHKCNQCGKAFNRSSTLNTHIRIHAGYKPFVCEFCGKGFHQKGNYKNHKLTHSGEKQYKCTICNKAFHQVYNLTFHMHTHNDKKPFTCATCGKGFCRNFDLKKHVRKLHDSVGPA 446
The following BLAST results are available for this feature:
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