TCONS_00055558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055558
Unique NameTCONS_00055558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055558 ID=TCONS_00055558|Name=TCONS_00055558|organism=Clytia hemisphaerica|type=transcript|length=1222bp
ctggcagcctggacacttcaaaaaaggtcggatttggccgaaatttggca
cacttgttccttgggtgaatatctgggggtgtttttttcattttttgaaa
aNGCATAAAGCTGACTATATGAGGGACGAGATCGAGCGAGGGCACGGTTA
CGTCGAGTGCGTTGTCAACTATATCGAATATTTGGTTGGTTTGGAGCAAT
CAACCTCCAAGATGTCTTCTTCTGAAGGCCTTCAAGAGATCTTTCAAATC
ACATCAGATAGTTTGAAACTAGTGGAGTACCTTGTTTCGACTTATGGTCG
AAAAATTGACCCCCTGATAAATACGTATGACAAAAGGTTTctgtttttat
gcttGCGGTTGCAATCCATCCTCAATTTGAAGTTGTATAAAATGAAGAAA
gaacaaacaaagaaaaacagcaAGATTTTGTCAGAGTATTATCGGCAATA
TAAACCAATGAACGCGATTGGTCGATCACCTTATTCTAAACCAAATCAAC
GAGGCACTGGTACACCATCCCCCTCCTCCCCCATTTCTGACCCCTCCCCT
GGTGGGAGCGTGGCATCTACTGGAAGCGCCGGTAGCAATAGTAGTAGTAA
TGGGGTCACCATACCATGTGATATGCATGAGAAGAGTTATCAATACCTTT
CTAATACCAAATATCTTGTCAACGGGCACAGACTTTGGGATGACTCTGAA
AGTTTGACCAATCAAGTGCAAGgTTTCATCCAAAGTTTGTCGAAGAAAGC
AGGGATACTCACCATGCAGAGCACGACGCTACATATCGTCGATTTCACTC
GTCAAGGACTATTAATCATACAAGAATCGAGAAAAGCTGCTGTCTCCTGa
catttgtgagtattttgggTGCTTGGATGCGTTCGTCCTGTGTACAAATT
CTCTCATCTTTCAACAAATTAACATATTAAAGCTTACACAccaaaaatga
gattttgtttATAGTATTTCTTACAGTCCACGTTCCAGAGggcttttaat
ttaaaaaacacCCCCGTTCGAAAAAAGTATAATATTTTGTCTCTTTATAA
ATATCTATTAATAATTATAGTATTACGAATTTTGCTAAAAAGCATTCGga
ttatcaaattttttaaaaagtaatgtCTCCATCGATattttgtttgttgt
tgaattttgaagggaaaaACGTCTGGAGGTCTCAAATTGTAACGAGGTTT
TGTACATTCTATTCAATATTAG
Run BLAST on NCBI

transcript from alignment at scaffold_253:1079854..1085228-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055558 ID=TCONS_00055558|Name=TCONS_00055558|organism=Clytia hemisphaerica|type=transcript|length=5375bp|location=Sequence derived from alignment at scaffold_253:1079854..1085228- (Clytia hemisphaerica)
CTGGCAGCCTGGACACTTCAAAAAAGGTCGGATTTGGCCGAAATTTGGCA
CACTTGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTTGAAA
ANGCATAAAGCTGACTATATGGTATGTCAACTTCATAGTATTGCATTTTA
AAAAACGTTACAATGTACTTGCGTATTAAAGTAGATATGATGAACACAAG
ATAAATCTGTTTTTTTTTAAATCATTCTACGAAAGCATTCTATTTTATGA
TTCAAAGAAAATTGGCAATCCGCACATGATACATGTAACTTCGCTGATTT
CAAATATTGTTTTTAGGTTTTCATAACTTTCTTGAAGCAAAAGTTACAAC
CCTTCAAAGTGGGTCCATTTTGGCCATTTTTGTCAATTTGTGGCCATTTT
TAGCCTACTTTGAAGGGTTGTAACTTTTCTCTAAGAAAGAAAACATATTT
GAAATCAGCGAAGTTTCAATTTCCAGAAAAGTATAAATTCATAATCTTCA
TTTTTCTATCTTTCATTTTCGAATTTTTTGAAAGGATTTGAAGTCTTAAA
ATCATCCGCCTAACATTATCTTTTCAACGGAGGTATTGCTTTTAGAGCAA
TGTATCAAAATGTTTTTTTGGAACAGCCTTTAGGTGTTTCTAAATTTTGG
TTATCAGTCACCTAATTTTTATTTGTATTTCCCATCAGTCTTTTCCCTAC
CCTAATGATTTATGATTGAGGTTTTTGCTATTATGATTTGAATTATTTTT
CTTTGTCAGAGGGACGAGATCGAGCGAGGGCACGGTTACGTCGAGTGCGT
TGTCAACTATATCGAATATTTGGTTGGTTTGGAGCAATCAACCTCCAAGA
TGTCTTCTTCTGAAGGCCTTCAAGAGATCTTTCAAATCACATCAGATAGT
TTGAAACTAGTGGAGTAAGTCCTGTTTGTACTTTTTGTGCCTTTGATGAA
ATTTTTCAGTCATTTTGAAATCTAGATCTTGAATGATGAAATGCTATGTT
CTTGATATTTATAAATTAACGTAATGAAATGATCAAACTAAACTTTAGCC
GGTTTCAGAAAGAATCATTTTTTCATTTTAGTGATAGCCCACTATTAATG
ATTTCCATGTAATTTTAGGTACCTTGTTTCGACTTATGGTCGAAAAATTG
ACCCCCTGATAAATACGTATGACAAAAGGTTTCTGTTTTTATGGTAAGTT
TTAATTCGTCTGTGTCTTACTGTATTTGAAGAAAAAATGAATGATTTAAC
TTACAAAGAAAGAATCGTTTCGAAGTCATCACTCGCGTAACAGTTGCGTT
TTATTCCAAAACAAAACGAACCAATTAATGCCCAGAGATGGATTTATTGT
TTTGGAACAAACAGGAACTGTAACCGGCTGAAAGTGTAGCGAGTTCAAAA
ATATCGCGAAGTAGAATAGAAGCTACTGCGTAAAAGATACCGCGACGTTA
CCGTGCTTTTTCTTTTTTAGCTTGCGGTTGCAATCCATCCTCAATTTGAA
GTTGTATAAAATGAAGAAAGAACAAACAAAGAAAAACAGCAAGGTACGAA
AAATGAAAGGGTTTGATGATGTGAACACCAAACTCGAAACGTCAAAAAGC
ATACCTTACAAAACGGTTTCGTTCAACTATGAACTATGAATCTTTTCCGT
TTTCTTGCTCCGAACCCTTCCAAACCCAATATGAACGATTCTTAATTGTA
ACGGAAACCGTACCGGAGCAATGTAAAACTTTGACATCTGAGATCTATAG
TTTTTCTCTTATTTGACACATTTCTAATGTATTTCACCTTCACTTCTCTC
TTTCAGATTTTGTCAGAGTATTATCGGGTAAGTAACTAGCCCTTCAGTTG
ATTTCAAGGAATAATCGGTAACATTTCTGGTCTAGGTATAACACCTACAG
TCTTGGCCGAAACCGTACCAAAATTTATTTGTTATTTCATTTTCTTCCCA
TTTTGCGATCTAGGTTCTAATTTTTATTGGCGCAAATTCGATTAAAATCT
CAATCTCGATTTTGAAAAGGCATTAAGCAGAAATAATTGTATTGGAGGTT
TTCTACGGAGAGCCATAGCCCAGAATAATCACCATTGATTATGCGCTTTT
AAAAGTTTTCATTTAAATTGTTGTAAATTGGAAATAATAATACCTTCTTT
CATCATTTCAGCAATATAAACCAATGAACGCGATTGGTCGATCACCTTAT
TCTAAACCAAATCAACGAGGGTAAAAGATCATTCAATATCTAACTTTTCC
TTTGCTGCGCCTCACTTGTGACAATGTAATCATCACAAGTCAAAATACTA
CCCCTGTTCTTAGAAGGGAAGTTCTTCATCGGGAAATTGGTTAATGTTTT
CTGCCACAATTCCTTAGAATTTCTTTTCATTGCTGTTGCTTTGAATCCAT
ATTGCATTATGAATAAGAGAGATATACAATGGGAGCAACAAATTTTTAAC
TCGACTTTTTCTTCATTACAGCAGCACTGGTACACCATCCCCCTCCTCCC
CCATTTCTGACCCCTCCCCTGGTGGGAGCGTGGCATCTACTGGAAGCGCC
GGTAGCAATAGTAGTAGTAATGGGGTCACCATACCATGTGATATGCATGA
GAAGAGTTATCAATACCTTTCTAATACCAAATATCTTGTCAACGGGCACA
GACTTTGGGATGACTCTGAAAGTTTGACCAATCAAGTGCAAGGTTTGTTA
TTTTGGATTAGTACTATATTTTCTTTTACACTATCGTTTGATACTAATGA
TACTTAATCTCAAATTGTTCCCTTGTGCTCTGAATTTTTTATTTTTTTGG
ACCTACCCCGGTGGAGGTCCTATAAATTAACCTTTGTCCGTTTGTCCGTT
CGTTCGTTAGTTATTAGCTTTCCTCGCGATTGGCTCGTTAGTTTTTTCTG
ATTTTTTGCACAAAGATGCTTAACTATAAACCCTCGAATGTGACGGAGCC
CGATTTTCAAAAAAAAAGATTTTTGGGCAAAATTGGGCAAAAAAACGGCT
AAAAAACGGGTTTTTTGGACTTTGTGAAAAATTAGGTCGTTAATTTTTTC
TGATTTTTTGTATGAAAGTAGGGTACCATCGTAGGTAAAAGATGGTTTAA
GCAGATTTTTGCAAGAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCT
ATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACT
CAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTTTTCTCATGAGGGCTTACTTTTAAAGAATATGTGTGTTTCGACAT
GAAATTTTGGTTGCTTGGCGTGTTTTTATAGAAAAACTGGCCAAATTCTA
TATATTCTTATAAGCGCATTATCAATTACTTAGGTATTAGCTTTTCTCGA
GATTGGCTCTTTCATTCTTTATGATTTTTTGAACAACAAAGATGCATAAC
TATAAACCCTCGAATGTGACGGAGCCCGATTTTCGAAGAAAAAAACTTGG
GGGCAAATTTGGGCCAAAAAACGGCTAAAAAATGGTTTTTTTGGACTTTG
TGAAAAATTGGATCATTAATTTTTTCTGATTTTTTGCAGGAAAGTAGGGT
ACCATCATACGTAAAAGATGGTTCAAGCAGATTTTTGCAAAAAAATTTTG
TTGGCTCAAAATACGCATGTTTATCTATAAGAATCACTATTAATAAGCAT
ACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTTATGAGATAGATGT
TTTTTTGCTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTTATAGAAAAACTGGCCAAATTCGATATTTTTTTATAAGCACA
CTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTTATTCT
TTATCATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAATGCGACG
GAGCTCGATTTTTGGAGAAAAAAATTTTGGGGTAAATTTCAGCTAAAAAA
TGGCTAAAAAAAGGGTTTTTTGGACTTGTTTTTTTTCTGAATTTTTGCAT
GAAAGTAGATTAAAGATGGCTCAAGCAGATTTTTGTAAAAAAAAGAATTT
TTCAGCTCAAAAAGCGCATATTTATCTATAAGAATCACTATTAATAAGCA
TACATCAATGTTCTGAAAATTACTGAATTTTTTGATGAGATATGTATTTT
TGGTCTCGAAGTATTGAATATGAAAGAATATTTTCAAGAGCATGAAATTT
TGCTTTTTAAACGTGTTTTTTTTATAAGAAACAAACGACTAATTTTGATA
GATCGTCACTATTTGTGTTCTAAATGATTGTTTAATGGTCACGCTTATGT
AGATATTAATTATACATTATATATATGTGTTAAATGCATAACCAGGTAGG
TCCATAAAAGTATCACTTGTTTATTTTTTATCAGGTTTCATCCAAAGTTT
GTCGAAGAAAGCAGGGATACTCACCATGCAGAGGTACTTGGTTAATTTAT
AATTTTTAGGGTGGTCTTCATTTTTCTTTTGCTTTTTCTTCGTCCTCACC
TTTTGTTTCGATACCCTATATATCTTGATTGTAAGCAATCTTAGATCTAC
ACTCACTGTTGTTACCTATCTACCCTCATCTTCGAATTCCTTGCGAACGA
TAAACGTGAAATACCTTTGGTACTGAGTTTCGCAGACCTGGATGAACCGT
CTGAATATCATATTTGCGTGTTTTCAATTCTGAAACGTGTCATAAACATA
TTCCTTTTTTTCATTTTCATCCAGCACGACGCTACATATCGTCGATTTCA
CTCGTCAAGGACTATTAATCATACAAGAATCGAGAAAAGCTGCTGTCTCC
TGACATTTGTGAGTATTTTGGGTGCTTGGATGCGTTCGTCCTGTGTACAA
ATTCTCTCATCTTTCAACAAATTAACATATTAAAGCTTACACACCAAAAA
TGAGATTTTGTTTATAGTATTTCTTACAGTCCACGTTCCAGAGGGCTTTT
AATTTAAAAAACACCCCCGTTCGAAAAAAGTATAATATTTTGTCTCTTTA
TAAATATCTATTAATAATTATAGTATTACGAATTTTGCTAAAAAGCATTC
GGATTATCAAATTTTTTAAAAAGTAATGTCTCCATCGATATTTTGTTTGT
TGTTGAATTTTGAAGGGAAAAACGTCTGGAGGTCTCAAATTGTAACGAGG
TTTTGTACATTCTATTCAATATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034942XLOC_034942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055558-exon-scaffold_253-1575043694:1085108..1085228TCONS_00055558-exon-scaffold_253-1575043694:1085108..1085228Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1575043694:1084315..1084469TCONS_00055558-exon-scaffold_253-1575043694:1084315..1084469Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1575043694:1084036..1084110TCONS_00055558-exon-scaffold_253-1575043694:1084036..1084110Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1575043694:1083686..1083758TCONS_00055558-exon-scaffold_253-1575043694:1083686..1083758Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1575043694:1083402..1083422TCONS_00055558-exon-scaffold_253-1575043694:1083402..1083422Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1575043694:1083009..1083067TCONS_00055558-exon-scaffold_253-1575043694:1083009..1083067Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1575043694:1082537..1082754TCONS_00055558-exon-scaffold_253-1575043694:1082537..1082754Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1575043694:1080596..1080644TCONS_00055558-exon-scaffold_253-1575043694:1080596..1080644Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1575043694:1079854..1080304TCONS_00055558-exon-scaffold_253-1575043694:1079854..1080304Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1510915933:1085108..1085228TCONS_00055558-exon-scaffold_253-1510915933:1085108..1085228Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1510915933:1084315..1084469TCONS_00055558-exon-scaffold_253-1510915933:1084315..1084469Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1510915933:1084036..1084110TCONS_00055558-exon-scaffold_253-1510915933:1084036..1084110Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1510915933:1083686..1083758TCONS_00055558-exon-scaffold_253-1510915933:1083686..1083758Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1510915933:1083402..1083422TCONS_00055558-exon-scaffold_253-1510915933:1083402..1083422Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1510915933:1083009..1083067TCONS_00055558-exon-scaffold_253-1510915933:1083009..1083067Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1510915933:1082537..1082754TCONS_00055558-exon-scaffold_253-1510915933:1082537..1082754Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1510915933:1080596..1080644TCONS_00055558-exon-scaffold_253-1510915933:1080596..1080644Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1510915933:1079854..1080304TCONS_00055558-exon-scaffold_253-1510915933:1079854..1080304Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1491911889:1085108..1085228TCONS_00055558-exon-scaffold_253-1491911889:1085108..1085228Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1491911889:1084315..1084469TCONS_00055558-exon-scaffold_253-1491911889:1084315..1084469Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1491911889:1084036..1084110TCONS_00055558-exon-scaffold_253-1491911889:1084036..1084110Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1491911889:1083686..1083758TCONS_00055558-exon-scaffold_253-1491911889:1083686..1083758Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1491911889:1083402..1083422TCONS_00055558-exon-scaffold_253-1491911889:1083402..1083422Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1491911889:1083009..1083067TCONS_00055558-exon-scaffold_253-1491911889:1083009..1083067Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1491911889:1082537..1082754TCONS_00055558-exon-scaffold_253-1491911889:1082537..1082754Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1491911889:1080596..1080644TCONS_00055558-exon-scaffold_253-1491911889:1080596..1080644Clytia hemisphaericaexon
TCONS_00055558-exon-scaffold_253-1491911889:1079854..1080304TCONS_00055558-exon-scaffold_253-1491911889:1079854..1080304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1079854..1085228 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20085	0.563893	0.343027	0.30121	4.25048	1.2726	2.81142	1.06506	2.63402	2.71109	2.47523	2.41346	2.73166	0.487917	0.454694	2.79312	1.69293	2.39206	0.286418	3.45564	2.28878	2.98841	3.50887	1.66	4.66933	2.52432	4.51518	4.72782	4.88207	6.88524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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