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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055579 ID=TCONS_00055579|Name=TCONS_00055579|organism=Clytia hemisphaerica|type=transcript|length=1142bp
GGTCTGTGCCGCGTGTCAGCGAGACCAAACACCCAAACAGGATTGGCACG
TCTACCTCTACCACCCTGTTTATAAAAGATAGATTCATAAAATAgatttg
gaaagatatttagaTAGCAAAATTGTGCACACCGAGCTGGTTATGCTAAG
CAAGATATTTTATATAACACAAGACCCTATAACATGCGCTGTCTTTTATC
acaaaattggcacaaaatcgTTGCCAGTTTCAGatgtttgtttgaaatgt
ttgtaCTCCGTAAATGTAGGATATATTGATATATTGTCTAGGGGTGGCAA
AATATGATCAAAACTTGCCTTGTTTGGGGGggtaaatacattttttttgt
aaaaggctaatttcaaaatttgtcttACGCGTTGTCGATGGCGAATCATT
GACTCGTCAACTTGAACCACGAAATTCTGACCACCACCACCAACATTGAT
CGGGTTCCTCTGCAAGTCTCTGGCACATACTTACCAGTCGAAGCAGTTGA
TACATGTCAATTATGACTTGTTTTGACATATTTGTTAACTGTCTGACATA
TTTCACTTGGATGCCATTAGACCAATAATATATGGCCATGAATAATTTGG
GTAATGGCACTTTAGTCCATTGCTGGAATATGGTACCGTCACGTATCTTG
ATTTTTCGCCAACACGGTCTACCACATCTCCTATTAATGAAATATAGAAT
AAAATtcgttttttcttaaaattctaatttttaaaatagGTTAACATGaa
tcaacttttaaaatttgagatGACAGCAGCATGACTGTCGTATTTGAATC
TTCTGAAATAAAATTCAGAACAAGTAATCATCTCAACGATTTCGGAGTGG
GGGTAAGAATTGTAACCGAGATTGAAGAGGTTTCTAAATATCAGACTATC
AAAGACATTGATTAgagGCGGTTGtccgcagatatgtaatttttgcacaa
aaatgtaatttctgcgcagatatgtaattattttgcgcaaaaatgtaatt
tcttgGTTTTTACAAAGTAACTATGGGGTAGTgccaaaatcattttttac
cCTTTTCAGCCctgtttccattcagactttcgtaGTCGGGTGCAACTGCC
GTAATTCTTTTTGCTGGGATAACATATACACACCTGTCTGAG Run BLAST on NCBI transcript from alignment at scaffold_253:4048..5189 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055579 ID=TCONS_00055579|Name=TCONS_00055579|organism=Clytia hemisphaerica|type=transcript|length=1142bp|location=Sequence derived from alignment at scaffold_253:4048..5189 (Clytia hemisphaerica)
CTCAGACAGGTGTGTATATGTTATCCCAGCAAAAAGAATTACGGCAGTTG
CACCCGACtacgaaagtctgaatggaaacagGGCTGAAAAGggtaaaaaa
tgattttggcACTACCCCATAGTTACTTTGTAAAAACcaagaaattacat
ttttgcgcaaaataattacatatctgcgcagaaattacatttttgtgcaa
aaattacatatctgcggaCAACCGCctcTAATCAATGTCTTTGATAGTCT
GATATTTAGAAACCTCTTCAATCTCGGTTACAATTCTTACCCCCACTCCG
AAATCGTTGAGATGATTACTTGTTCTGAATTTTATTTCAGAAGATTCAAA
TACGACAGTCATGCTGCTGTCatctcaaattttaaaagttgattCATGTT
AACctattttaaaaattagaattttaagaaaaaacgaATTTTATTCTATA
TTTCATTAATAGGAGATGTGGTAGACCGTGTTGGCGAAAAATCAAGATAC
GTGACGGTACCATATTCCAGCAATGGACTAAAGTGCCATTACCCAAATTA
TTCATGGCCATATATTATTGGTCTAATGGCATCCAAGTGAAATATGTCAG
ACAGTTAACAAATATGTCAAAACAAGTCATAATTGACATGTATCAACTGC
TTCGACTGGTAAGTATGTGCCAGAGACTTGCAGAGGAACCCGATCAATGT
TGGTGGTGGTGGTCAGAATTTCGTGGTTCAAGTTGACGAGTCAATGATTC
GCCATCGACAACGCGTaagacaaattttgaaattagccttttacaaaaaa
aatgtatttaccCCCCCAAACAAGGCAAGTTTTGATCATATTTTGCCACC
CCTAGACAATATATCAATATATCCTACATTTACGGAGtacaaacatttca
aacaaacatCTGAAACTGGCAAcgattttgtgccaattttgtGATAAAAG
ACAGCGCATGTTATAGGGTCTTGTGTTATATAAAATATCTTGCTTAGCAT
AACCAGCTCGGTGTGCACAATTTTGCTAtctaaatatctttccaaatcTA
TTTTATGAATCTATCTTTTATAAACAGGGTGGTAGAGGTAGACGTGCCAA
TCCTGTTTGGGTGTTTGGTCTCGCTGACACGCGGCACAGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055579-exon-scaffold_253-1491911889:4048..5189 | TCONS_00055579-exon-scaffold_253-1491911889:4048..5189 | Clytia hemisphaerica | exon |
| TCONS_00055579-exon-scaffold_253-1510915933:4048..5189 | TCONS_00055579-exon-scaffold_253-1510915933:4048..5189 | Clytia hemisphaerica | exon |
| TCONS_00055579-exon-scaffold_253-1575043694:4048..5189 | TCONS_00055579-exon-scaffold_253-1575043694:4048..5189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:4048..5189 . |
Blast
The following BLAST results are available for this feature:
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