TCONS_00055579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055579
Unique NameTCONS_00055579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1142

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055579 ID=TCONS_00055579|Name=TCONS_00055579|organism=Clytia hemisphaerica|type=transcript|length=1142bp
GGTCTGTGCCGCGTGTCAGCGAGACCAAACACCCAAACAGGATTGGCACG
TCTACCTCTACCACCCTGTTTATAAAAGATAGATTCATAAAATAgatttg
gaaagatatttagaTAGCAAAATTGTGCACACCGAGCTGGTTATGCTAAG
CAAGATATTTTATATAACACAAGACCCTATAACATGCGCTGTCTTTTATC
acaaaattggcacaaaatcgTTGCCAGTTTCAGatgtttgtttgaaatgt
ttgtaCTCCGTAAATGTAGGATATATTGATATATTGTCTAGGGGTGGCAA
AATATGATCAAAACTTGCCTTGTTTGGGGGggtaaatacattttttttgt
aaaaggctaatttcaaaatttgtcttACGCGTTGTCGATGGCGAATCATT
GACTCGTCAACTTGAACCACGAAATTCTGACCACCACCACCAACATTGAT
CGGGTTCCTCTGCAAGTCTCTGGCACATACTTACCAGTCGAAGCAGTTGA
TACATGTCAATTATGACTTGTTTTGACATATTTGTTAACTGTCTGACATA
TTTCACTTGGATGCCATTAGACCAATAATATATGGCCATGAATAATTTGG
GTAATGGCACTTTAGTCCATTGCTGGAATATGGTACCGTCACGTATCTTG
ATTTTTCGCCAACACGGTCTACCACATCTCCTATTAATGAAATATAGAAT
AAAATtcgttttttcttaaaattctaatttttaaaatagGTTAACATGaa
tcaacttttaaaatttgagatGACAGCAGCATGACTGTCGTATTTGAATC
TTCTGAAATAAAATTCAGAACAAGTAATCATCTCAACGATTTCGGAGTGG
GGGTAAGAATTGTAACCGAGATTGAAGAGGTTTCTAAATATCAGACTATC
AAAGACATTGATTAgagGCGGTTGtccgcagatatgtaatttttgcacaa
aaatgtaatttctgcgcagatatgtaattattttgcgcaaaaatgtaatt
tcttgGTTTTTACAAAGTAACTATGGGGTAGTgccaaaatcattttttac
cCTTTTCAGCCctgtttccattcagactttcgtaGTCGGGTGCAACTGCC
GTAATTCTTTTTGCTGGGATAACATATACACACCTGTCTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_253:4048..5189

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055579 ID=TCONS_00055579|Name=TCONS_00055579|organism=Clytia hemisphaerica|type=transcript|length=1142bp|location=Sequence derived from alignment at scaffold_253:4048..5189 (Clytia hemisphaerica)
CTCAGACAGGTGTGTATATGTTATCCCAGCAAAAAGAATTACGGCAGTTG CACCCGACtacgaaagtctgaatggaaacagGGCTGAAAAGggtaaaaaa tgattttggcACTACCCCATAGTTACTTTGTAAAAACcaagaaattacat ttttgcgcaaaataattacatatctgcgcagaaattacatttttgtgcaa aaattacatatctgcggaCAACCGCctcTAATCAATGTCTTTGATAGTCT GATATTTAGAAACCTCTTCAATCTCGGTTACAATTCTTACCCCCACTCCG AAATCGTTGAGATGATTACTTGTTCTGAATTTTATTTCAGAAGATTCAAA TACGACAGTCATGCTGCTGTCatctcaaattttaaaagttgattCATGTT AACctattttaaaaattagaattttaagaaaaaacgaATTTTATTCTATA TTTCATTAATAGGAGATGTGGTAGACCGTGTTGGCGAAAAATCAAGATAC GTGACGGTACCATATTCCAGCAATGGACTAAAGTGCCATTACCCAAATTA TTCATGGCCATATATTATTGGTCTAATGGCATCCAAGTGAAATATGTCAG ACAGTTAACAAATATGTCAAAACAAGTCATAATTGACATGTATCAACTGC TTCGACTGGTAAGTATGTGCCAGAGACTTGCAGAGGAACCCGATCAATGT TGGTGGTGGTGGTCAGAATTTCGTGGTTCAAGTTGACGAGTCAATGATTC GCCATCGACAACGCGTaagacaaattttgaaattagccttttacaaaaaa aatgtatttaccCCCCCAAACAAGGCAAGTTTTGATCATATTTTGCCACC CCTAGACAATATATCAATATATCCTACATTTACGGAGtacaaacatttca aacaaacatCTGAAACTGGCAAcgattttgtgccaattttgtGATAAAAG ACAGCGCATGTTATAGGGTCTTGTGTTATATAAAATATCTTGCTTAGCAT AACCAGCTCGGTGTGCACAATTTTGCTAtctaaatatctttccaaatcTA TTTTATGAATCTATCTTTTATAAACAGGGTGGTAGAGGTAGACGTGCCAA TCCTGTTTGGGTGTTTGGTCTCGCTGACACGCGGCACAGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034951XLOC_034951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055579-exon-scaffold_253-1491911889:4048..5189TCONS_00055579-exon-scaffold_253-1491911889:4048..5189Clytia hemisphaericaexon
TCONS_00055579-exon-scaffold_253-1510915933:4048..5189TCONS_00055579-exon-scaffold_253-1510915933:4048..5189Clytia hemisphaericaexon
TCONS_00055579-exon-scaffold_253-1575043694:4048..5189TCONS_00055579-exon-scaffold_253-1575043694:4048..5189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:4048..5189 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.947348 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0380254 0.0741616 0.172217 0 0.256397 0.324174 0.244439 0.137304 0.0640866 0.119072 0.115575 0.0506495 0.177027 0.262634 0.151145 0.0695149 0.171273 0.0292583 0 0.0422986 0 0.107597 0 0 0 0.947348 0 0 0.0422053 0.0430005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Sequence
Match NameE-valueIdentityDescription
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