Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055670 ID=TCONS_00055670|Name=TCONS_00055670|organism=Clytia hemisphaerica|type=transcript|length=821bpRun BLAST on NCBI transcript from alignment at scaffold_256:7819..8639+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055670 ID=TCONS_00055670|Name=TCONS_00055670|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at scaffold_256:7819..8639+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00055670 vs. Swiss-Prot (Human)
Match: ZN418 (Zinc finger protein 418 OS=Homo sapiens GN=ZNF418 PE=1 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 5.262e-41 Identity = 70/136 (51.47%), Postives = 99/136 (72.79%), Query Frame = -1 Query: 3 NRGQRHTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 410 N + HTG++P++C ECGK F+ KGSL H R+HTG++P++C ECGK FS K SL H RVH+GE+P+EC ECGK FS+ G L +H + + + + C +CGK F+Q+GNLI+H H + ++C+ECGKCFS+K Sbjct: 247 NHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGERPYECGECGKSFSQNGTLIKHQRVHTGERPYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQK 382 HSP 2 Score: 147.902 bits (372), Expect = 5.529e-40 Identity = 67/131 (51.15%), Postives = 95/131 (72.52%), Query Frame = -1 Query: 3 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 395 HTG++P++C ECGK F+ KGSL H R+HTG++P++C ECGK FS +L H RVH+GE+P+EC+ECGKCF+++GNL +H + + + C +CGK FSQ+G L H +H + ++C ECGK FSRK Sbjct: 280 HTGKRPYECGECGKSFSHKGSLVQHQRVHTGERPYECGECGKSFSQNGTLIKHQRVHTGERPYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYECGECGKSFSRK 410 HSP 3 Score: 145.591 bits (366), Expect = 2.959e-39 Identity = 65/131 (49.62%), Postives = 95/131 (72.52%), Query Frame = -1 Query: 3 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 395 HTGE+P++C ECGK F++ G+L H R+HTG++P++CEECGKCF+ K +L H R H+ E+P+EC+ECGKCFS++G L H + + + + C +CGK FS++G+L H H + ++C ECGK FSRK Sbjct: 308 HTGERPYECGECGKSFSQNGTLIKHQRVHTGERPYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYECGECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRK 438 HSP 4 Score: 140.198 bits (352), Expect = 3.199e-37 Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = -1 Query: 3 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 395 HTGE+P++C+ECGK FT+KG+L H R HT ++P++CEECGKCFS K +L H RVH+ E+P+EC ECGK FS +G+L H + + + C +CGK FS++GNLI+H H + ++C+EC K F K Sbjct: 336 HTGERPYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYECGECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYECRECRKLFRGK 466 HSP 5 Score: 134.035 bits (336), Expect = 4.117e-35 Identity = 65/145 (44.83%), Postives = 98/145 (67.59%), Query Frame = -1 Query: 3 ATKIILPQKNRGQRHTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 437 +TK + Q+ QR + C ECGK F++ S+ +H R+HTG++P++C ECGK FS K SL H RVH+G++P+EC ECGK FS +G+L +H + + + + C +CGK FSQ G LI+H +H + ++C+ECGKCF++K Sbjct: 213 STKHVFVQQ---QRLPSREECYCWECGKSFSKYDSVSNHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGERPYECGECGKSFSQNGTLIKHQRVHTGERPYECEECGKCFTQK 354 HSP 6 Score: 130.568 bits (327), Expect = 8.156e-34 Identity = 63/137 (45.99%), Postives = 92/137 (67.15%), Query Frame = -1 Query: 12 LPQKNRGQRHTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCF 422 L Q RG HT E+P++C+ECGK F++KG+L +H R+HT ++P++C ECGK FS K L+ H R H+GE+P+EC ECGK FS +GNL +H + + + C +C K F + +LI H +H + ++C ECGK F Sbjct: 357 LIQHQRG--HTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYECGECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYECRECRKLFRGKSHLIEHQRVHTGERPYECNECGKSF 491 HSP 7 Score: 130.183 bits (326), Expect = 1.173e-33 Identity = 59/129 (45.74%), Postives = 85/129 (65.89%), Query Frame = -1 Query: 9 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFS 395 HTGE+P++C+EC K F K L +H R+HTG++P++C ECGK F + H RVH+GE+PFEC ECGK F + +L RH + + + + C +CGK F Q +L+RH H + ++C+ECGK FS Sbjct: 448 HTGERPYECRECRKLFRGKSHLIEHQRVHTGERPYECNECGKSFQDSSGFRVHQRVHTGEKPFECSECGKSFPQSCSLLRHRRVHTGERPYECGECGKSFHQSSSLLRHQKTHTAERPYECRECGKFFS 576 HSP 8 Score: 129.798 bits (325), Expect = 1.499e-33 Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = -1 Query: 12 KNRGQRHTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCF 413 +N + HTGE+P++C ECGK F+RKG+L H R HTG++P++C EC K F K L H RVH+GE+P+EC ECGK F + H + + K F C++CGK F Q +L+RH +H + ++C ECGK F Sbjct: 414 RNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYECRECRKLFRGKSHLIEHQRVHTGERPYECNECGKSFQDSSGFRVHQRVHTGEKPFECSECGKSFPQSCSLLRHRRVHTGERPYECGECGKSF 547 HSP 9 Score: 124.79 bits (312), Expect = 7.796e-32 Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = -1 Query: 3 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 395 HTGE+P++C ECGK F + H R+HTG+KPF+C ECGK F SL H RVH+GE+P+EC ECGK F + +L RH + + + C +CGK FS +L+ H +H + ++C+ECGK F+R+ Sbjct: 476 HTGERPYECNECGKSFQDSSGFRVHQRVHTGEKPFECSECGKSFPQSCSLLRHRRVHTGERPYECGECGKSFHQSSSLLRHQKTHTAERPYECRECGKFFS---SLLEHRRVHTGERPYECRECGKTFTRR 603 HSP 10 Score: 123.635 bits (309), Expect = 2.179e-31 Identity = 59/130 (45.38%), Postives = 86/130 (66.15%), Query Frame = -1 Query: 6 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSR 395 HTGE+P++C ECGK F + SL H + HT ++P++C ECGK FS SL H RVH+GE+P+EC+ECGK F+ R ++H L + K + C++CGK F++ +L H +H + ++C ECGK F R Sbjct: 532 HTGERPYECGECGKSFHQSSSLLRHQKTHTAERPYECRECGKFFS---SLLEHRRVHTGERPYECRECGKTFTRRSAHFKHQRLHTRGKPYECSECGKSFAETFSLTEHRRVHTGERPYECSECGKSFHR 658 HSP 11 Score: 120.553 bits (301), Expect = 2.603e-30 Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = -1 Query: 12 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCF 395 HT E+P++C ECGK F+RKG L++H R HTG++P++C ECGK FS K +L H R H+GE+P+EC+EC K F + +L H + + + + C +CGK F H +H K F+C ECGK F Sbjct: 392 HTRERPYECGECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYECRECRKLFRGKSHLIEHQRVHTGERPYECNECGKSFQDSSGFRVHQRVHTGEKPFECSECGKSF 519 HSP 12 Score: 107.457 bits (267), Expect = 7.779e-26 Identity = 48/114 (42.11%), Postives = 78/114 (68.42%), Query Frame = -1 Query: 54 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN 395 HT E+P++C+ECGKFF+ SL +H R+HTG++P++C ECGK F+ + + H R+H+ +P+EC ECGK F+E +L H + + + + C++CGK F + +L+RH +H Sbjct: 560 HTAERPYECRECGKFFS---SLLEHRRVHTGERPYECRECGKTFTRRSAHFKHQRLHTRGKPYECSECGKSFAETFSLTEHRRVHTGERPYECSECGKSFHRSSSLLRHQRVHT 670 HSP 13 Score: 97.4413 bits (241), Expect = 2.197e-22 Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = -1 Query: 135 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSE 395 HTGE+P++C+ECGK FTR+ + H R+HT KP++C ECGK F+ SL H RVH+GE+P+EC ECGK F +L RH + +E Sbjct: 585 HTGERPYECRECGKTFTRRSAHFKHQRLHTRGKPYECSECGKSFAETFSLTEHRRVHTGERPYECSECGKSFHRSSSLLRHQRVHTE 671 HSP 14 Score: 77.411 bits (189), Expect = 7.306e-16 Identity = 57/210 (27.14%), Postives = 90/210 (42.86%), Query Frame = -1 Query: 6 NLTIDATNSQVENAEARERKNNLATKIILPQKNRGQRHTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWK-------------------------------------------ESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSR 506 N D++N +N E+ + + L K R + H E+ + GK F L HTG+K EC F W +S+ H RVH+G++P+EC ECGK FS +G+L +H + + + + C +CGK FS +G+L++H +H + ++C ECGK FS+ Sbjct: 117 NKLYDSSNRPHQNQYLGEKPYRSSVEEALFVK-RCKFHVSEESSIFIQSGKDFLPSSGLLLQEATHTGEKSNSKPECESPFQWGDTHYSCGECMKHSSTKHVFVQQQRLPSREECYCWECGKSFSKYDSVSNHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGERPYECGECGKSFSQ 325 The following BLAST results are available for this feature:
BLAST of TCONS_00055670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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