TCONS_00055670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055670
Unique NameTCONS_00055670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055670 ID=TCONS_00055670|Name=TCONS_00055670|organism=Clytia hemisphaerica|type=transcript|length=821bp
TATTTTCGGGAAAAGCACTTACCACATTCCTTACATTTAAAAGATTTGAT
TCAATTGTGCATGTTTGAATGTCGTATCAAGTTACCTCGTTGGGAAAATT
GTTTAccacattttgcacaattaaAACGTTTGATTTCACTTTGCAAGTAC
ATGTGTCTATATAAGTTACCTCTTTCagaaaaacatttaccacattcttt
gCACTCAAAAGGTTGTTCTCCAGAATGTACTCTCATGTGACctttcaaac
tttctttccatgaaaaacatttaccacattcttcacatttGAATGGTTTT
TGTCCGGTGTGTATCCTCGTGTGATCTTTCAAACTGCCTTTCCTTGTAAA
aaatttaccacattcttgacacttGAATGGTTTTTCTCCAGTGTGTCTTT
GGCCACGGTTTTTTTGAGGCAAGATTATTTTTGTGGCAAGATTATTTTTC
CTTTCCCTGGCTTCTGCATTTTCTACTTGTGAATTAGTGGCATCTATTGT
TAAGTTTGTTGGTGGAATTATTTCATCAAGTTCaattttaatatcaaaag
aatCGGATTGATGCTGAGAATCGGATACCTCTTCGACAGGggcaaaataa
ttattttcctcttcaatctttattttcAATAGTATATCATCATCTATGTT
TGTATCAACAAATTCATGCTTTTCCTCTCCAAAGAAAGCTAAAAAAGCAT
CCTCTGGACCAATCTTGATGGAAACCGAATTCACTTTTTGTTCGTCTTTG
AATTCTTTATTCATATCAttagttttcttttgttatctttATCATACCTG
GAataagaaaaaaggaaattg
Run BLAST on NCBI

transcript from alignment at scaffold_256:7819..8639+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055670 ID=TCONS_00055670|Name=TCONS_00055670|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at scaffold_256:7819..8639+ (Clytia hemisphaerica)
TATTTTCGGGAAAAGCACTTACCACATTCCTTACATTTAAAAGATTTGAT TCAATTGTGCATGTTTGAATGTCGTATCAAGTTACCTCGTTGGGAAAATT GTTTAccacattttgcacaattaaAACGTTTGATTTCACTTTGCAAGTAC ATGTGTCTATATAAGTTACCTCTTTCagaaaaacatttaccacattcttt gCACTCAAAAGGTTGTTCTCCAGAATGTACTCTCATGTGACctttcaaac tttctttccatgaaaaacatttaccacattcttcacatttGAATGGTTTT TGTCCGGTGTGTATCCTCGTGTGATCTTTCAAACTGCCTTTCCTTGTAAA aaatttaccacattcttgacacttGAATGGTTTTTCTCCAGTGTGTCTTT GGCCACGGTTTTTTTGAGGCAAGATTATTTTTGTGGCAAGATTATTTTTC CTTTCCCTGGCTTCTGCATTTTCTACTTGTGAATTAGTGGCATCTATTGT TAAGTTTGTTGGTGGAATTATTTCATCAAGTTCaattttaatatcaaaag aatCGGATTGATGCTGAGAATCGGATACCTCTTCGACAGGggcaaaataa ttattttcctcttcaatctttattttcAATAGTATATCATCATCTATGTT TGTATCAACAAATTCATGCTTTTCCTCTCCAAAGAAAGCTAAAAAAGCAT CCTCTGGACCAATCTTGATGGAAACCGAATTCACTTTTTGTTCGTCTTTG AATTCTTTATTCATATCAttagttttcttttgttatctttATCATACCTG GAataagaaaaaaggaaattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035032XLOC_035032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055670-exon-scaffold_256-1491911889:7819..8639TCONS_00055670-exon-scaffold_256-1491911889:7819..8639Clytia hemisphaericaexon
TCONS_00055670-exon-scaffold_256-1510915933:7819..8639TCONS_00055670-exon-scaffold_256-1510915933:7819..8639Clytia hemisphaericaexon
TCONS_00055670-exon-scaffold_256-1575043694:7819..8639TCONS_00055670-exon-scaffold_256-1575043694:7819..8639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:7819..8639 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.10372 5.77172 4.09452 2.7155 0.731349 0.154626 0.670129 0 0.380679 0 0.678618 8.06289e-06 0.161761 0.22232 0.0545919 0.486155 0.45933 0.286361 0.0192859 0.0480205 0.562106 0.377178 3.07144 2.63319 0.774888 1.06872 0.0360704 0 1.22095 0.934226
Blast
BLAST of TCONS_00055670 vs. Swiss-Prot (Human)
Match: ZN418 (Zinc finger protein 418 OS=Homo sapiens GN=ZNF418 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.262e-41
Identity = 70/136 (51.47%), Postives = 99/136 (72.79%), Query Frame = -1
Query:    3 NRGQRHTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 410
            N  + HTG++P++C ECGK F+ KGSL  H R+HTG++P++C ECGK FS K SL  H RVH+GE+P+EC ECGK FS+ G L +H  + +  + + C +CGK F+Q+GNLI+H   H   + ++C+ECGKCFS+K
Sbjct:  247 NHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGERPYECGECGKSFSQNGTLIKHQRVHTGERPYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQK 382          

HSP 2 Score: 147.902 bits (372), Expect = 5.529e-40
Identity = 67/131 (51.15%), Postives = 95/131 (72.52%), Query Frame = -1
Query:    3 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 395
            HTG++P++C ECGK F+ KGSL  H R+HTG++P++C ECGK FS   +L  H RVH+GE+P+EC+ECGKCF+++GNL +H    +  + + C +CGK FSQ+G L  H  +H   + ++C ECGK FSRK
Sbjct:  280 HTGKRPYECGECGKSFSHKGSLVQHQRVHTGERPYECGECGKSFSQNGTLIKHQRVHTGERPYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYECGECGKSFSRK 410          

HSP 3 Score: 145.591 bits (366), Expect = 2.959e-39
Identity = 65/131 (49.62%), Postives = 95/131 (72.52%), Query Frame = -1
Query:    3 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 395
            HTGE+P++C ECGK F++ G+L  H R+HTG++P++CEECGKCF+ K +L  H R H+ E+P+EC+ECGKCFS++G L  H  + +  + + C +CGK FS++G+L  H   H   + ++C ECGK FSRK
Sbjct:  308 HTGERPYECGECGKSFSQNGTLIKHQRVHTGERPYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYECGECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRK 438          

HSP 4 Score: 140.198 bits (352), Expect = 3.199e-37
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = -1
Query:    3 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 395
            HTGE+P++C+ECGK FT+KG+L  H R HT ++P++CEECGKCFS K +L  H RVH+ E+P+EC ECGK FS +G+L  H    +  + + C +CGK FS++GNLI+H   H   + ++C+EC K F  K
Sbjct:  336 HTGERPYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYECGECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYECRECRKLFRGK 466          

HSP 5 Score: 134.035 bits (336), Expect = 4.117e-35
Identity = 65/145 (44.83%), Postives = 98/145 (67.59%), Query Frame = -1
Query:    3 ATKIILPQKNRGQRHTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 437
            +TK +  Q+   QR    +   C ECGK F++  S+ +H R+HTG++P++C ECGK FS K SL  H RVH+G++P+EC ECGK FS +G+L +H  + +  + + C +CGK FSQ G LI+H  +H   + ++C+ECGKCF++K
Sbjct:  213 STKHVFVQQ---QRLPSREECYCWECGKSFSKYDSVSNHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGERPYECGECGKSFSQNGTLIKHQRVHTGERPYECEECGKCFTQK 354          

HSP 6 Score: 130.568 bits (327), Expect = 8.156e-34
Identity = 63/137 (45.99%), Postives = 92/137 (67.15%), Query Frame = -1
Query:   12 LPQKNRGQRHTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCF 422
            L Q  RG  HT E+P++C+ECGK F++KG+L +H R+HT ++P++C ECGK FS K  L+ H R H+GE+P+EC ECGK FS +GNL +H    +  + + C +C K F  + +LI H  +H   + ++C ECGK F
Sbjct:  357 LIQHQRG--HTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYECGECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYECRECRKLFRGKSHLIEHQRVHTGERPYECNECGKSF 491          

HSP 7 Score: 130.183 bits (326), Expect = 1.173e-33
Identity = 59/129 (45.74%), Postives = 85/129 (65.89%), Query Frame = -1
Query:    9 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFS 395
            HTGE+P++C+EC K F  K  L +H R+HTG++P++C ECGK F      + H RVH+GE+PFEC ECGK F +  +L RH  + +  + + C +CGK F Q  +L+RH   H   + ++C+ECGK FS
Sbjct:  448 HTGERPYECRECRKLFRGKSHLIEHQRVHTGERPYECNECGKSFQDSSGFRVHQRVHTGEKPFECSECGKSFPQSCSLLRHRRVHTGERPYECGECGKSFHQSSSLLRHQKTHTAERPYECRECGKFFS 576          

HSP 8 Score: 129.798 bits (325), Expect = 1.499e-33
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = -1
Query:   12 KNRGQRHTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCF 413
            +N  + HTGE+P++C ECGK F+RKG+L  H R HTG++P++C EC K F  K  L  H RVH+GE+P+EC ECGK F +      H  + +  K F C++CGK F Q  +L+RH  +H   + ++C ECGK F
Sbjct:  414 RNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYECRECRKLFRGKSHLIEHQRVHTGERPYECNECGKSFQDSSGFRVHQRVHTGEKPFECSECGKSFPQSCSLLRHRRVHTGERPYECGECGKSF 547          

HSP 9 Score: 124.79 bits (312), Expect = 7.796e-32
Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = -1
Query:    3 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSRK 395
            HTGE+P++C ECGK F      + H R+HTG+KPF+C ECGK F    SL  H RVH+GE+P+EC ECGK F +  +L RH    +  + + C +CGK FS   +L+ H  +H   + ++C+ECGK F+R+
Sbjct:  476 HTGERPYECNECGKSFQDSSGFRVHQRVHTGEKPFECSECGKSFPQSCSLLRHRRVHTGERPYECGECGKSFHQSSSLLRHQKTHTAERPYECRECGKFFS---SLLEHRRVHTGERPYECRECGKTFTRR 603          

HSP 10 Score: 123.635 bits (309), Expect = 2.179e-31
Identity = 59/130 (45.38%), Postives = 86/130 (66.15%), Query Frame = -1
Query:    6 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSR 395
            HTGE+P++C ECGK F +  SL  H + HT ++P++C ECGK FS   SL  H RVH+GE+P+EC+ECGK F+ R   ++H  L +  K + C++CGK F++  +L  H  +H   + ++C ECGK F R
Sbjct:  532 HTGERPYECGECGKSFHQSSSLLRHQKTHTAERPYECRECGKFFS---SLLEHRRVHTGERPYECRECGKTFTRRSAHFKHQRLHTRGKPYECSECGKSFAETFSLTEHRRVHTGERPYECSECGKSFHR 658          

HSP 11 Score: 120.553 bits (301), Expect = 2.603e-30
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = -1
Query:   12 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCF 395
            HT E+P++C ECGK F+RKG L++H R HTG++P++C ECGK FS K +L  H R H+GE+P+EC+EC K F  + +L  H  + +  + + C +CGK F        H  +H   K F+C ECGK F
Sbjct:  392 HTRERPYECGECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYECRECRKLFRGKSHLIEHQRVHTGERPYECNECGKSFQDSSGFRVHQRVHTGEKPFECSECGKSF 519          

HSP 12 Score: 107.457 bits (267), Expect = 7.779e-26
Identity = 48/114 (42.11%), Postives = 78/114 (68.42%), Query Frame = -1
Query:   54 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN 395
            HT E+P++C+ECGKFF+   SL +H R+HTG++P++C ECGK F+ + +   H R+H+  +P+EC ECGK F+E  +L  H  + +  + + C++CGK F +  +L+RH  +H 
Sbjct:  560 HTAERPYECRECGKFFS---SLLEHRRVHTGERPYECRECGKTFTRRSAHFKHQRLHTRGKPYECSECGKSFAETFSLTEHRRVHTGERPYECSECGKSFHRSSSLLRHQRVHT 670          

HSP 13 Score: 97.4413 bits (241), Expect = 2.197e-22
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  135 HTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSE 395
            HTGE+P++C+ECGK FTR+ +   H R+HT  KP++C ECGK F+   SL  H RVH+GE+P+EC ECGK F    +L RH  + +E
Sbjct:  585 HTGERPYECRECGKTFTRRSAHFKHQRLHTRGKPYECSECGKSFAETFSLTEHRRVHTGERPYECSECGKSFHRSSSLLRHQRVHTE 671          

HSP 14 Score: 77.411 bits (189), Expect = 7.306e-16
Identity = 57/210 (27.14%), Postives = 90/210 (42.86%), Query Frame = -1
Query:    6 NLTIDATNSQVENAEARERKNNLATKIILPQKNRGQRHTGEKPFKCQECGKFFTRKGSLKDHTRIHTGQKPFKCEECGKCFSWK-------------------------------------------ESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLQSEIKRFNCAKCGKQFSQRGNLIRHSNMHN*IKSFKCKECGKCFSR 506
            N   D++N   +N    E+    + +  L  K R + H  E+     + GK F     L      HTG+K     EC   F W                                            +S+  H RVH+G++P+EC ECGK FS +G+L +H  + +  + + C +CGK FS +G+L++H  +H   + ++C ECGK FS+
Sbjct:  117 NKLYDSSNRPHQNQYLGEKPYRSSVEEALFVK-RCKFHVSEESSIFIQSGKDFLPSSGLLLQEATHTGEKSNSKPECESPFQWGDTHYSCGECMKHSSTKHVFVQQQRLPSREECYCWECGKSFSKYDSVSNHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVHTGERPYECGECGKSFSQ 325          
The following BLAST results are available for this feature:
BLAST of TCONS_00055670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN4185.262e-4151.47Zinc finger protein 418 OS=Homo sapiens GN=ZNF418 ... [more]
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