TCONS_00055730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055730
Unique NameTCONS_00055730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055730 ID=TCONS_00055730|Name=TCONS_00055730|organism=Clytia hemisphaerica|type=transcript|length=1482bp
GGATTGATGTTAACTAGTGGTAAAAGAATCAAGTTCTACACCTTAATATC
AACAATGGACTTGATTGCAAAAGCGCAAATCTTGTGTATGAACCAACATA
ACGGCTTCCATGGTTGCTCAACCTGCCTTATCAAAGGAGTTCATGAAAAC
AATGTTCAAGTATATCCATATTCAGAAGCAATCGATCAGAAGAAAAGTGC
AAAGAGAAATGATGAGAAGACTTTTAATGACGCCATAAAAGCCATCTCAT
CAGGACAAAAAGTCAATGGTATCAAAGGGCCATCTTCCCTTCACCTTATA
CCAGAATTCAGTATAACAGACGGTGTTGTCCCTGACTACATGCATGGAGT
TTTATTGGGTGTCGCAAAGGTCTTAGTTGCATGCTGGTTTGACCCCTCAG
AGCATAGAATcttttataaagaaaacaggacATACCCAGAATATTATATT
GGACACATGCTAATGAATTAAGAACTTGGTTACTGTATTATTCGCTACCC
TGTTTGGAAGGTATACTTTTGCCAATCTACTGGAATCACCTAGCGCTGCT
TGTAGAAGCAACACATATTTTGCTTGGCGAAAAAATCAGCAAGACAGATT
TGGAATGGGCAAATGATTGCTTACAACTCTTCtacaaatattttagtgaa
ttttATGaaagaagaaaaagtggATTGAATATCCACAATTTGATTCACCT
TCCACTTTATGTTGAGTACTGGGGACCTCTATGGGCATATTCATGTTTTG
GTTTCGAAAGCTTGAATGGATCAATTATTAAGCAGGTCCATGGAACGAAA
AATGGTAGTACACAGATCATTAAGACTTTCAATGCACTCAAAGCAATCCA
TATCATGATGCAATCACAAAATACCAAGGAAATTGTGCGAAATGCCTTGT
CATCCATGCTTATGAAAAATCGTAGAAACACAAATTCCTGGAAAGCTGTA
AATGAAAAATGTTCTGTTGGTGGAAAAGCAATGCATCTTGATAAGCAAGA
ACTTGAAAAGTTCAAGTTGAAATCacattgtaaaaaatatttgcaGCTTA
AAAAAAAGGGAGTTTATTTCACCTCATATCAGTACAAGCGTGCCGTTAAA
ACGGTTAACTATTTTGCTATGTGCCACAAGGACGGAGAAAAGGTCATTGC
AAAAATTCACTATTTCGTTGTTGATGatgaaaaagtatatttttgtGCAC
AAGAAGTACAAAGAAACAGTGAATGGAAAGTTGTTCCACAGTGGAATCGT
AGTTGCATCATTAGAATCGAACCTAATGAAAGTGCTCCACTGTTTCTCGC
ACCATCAGATTTCCTCAATGAAAAGCTATTTTTAATGGATGGCAATTTGG
ATTTTATGTGCGTTTGCAAGATTCCTAACACAGTTGAAGGAGATTGATAT
AACAAAGATGTGTTCTATTGGGTTTTTCACTAGACTTTTGTAATCTTCTA
ATTAATAatgtaatttgtaaaatatattgGTT
Run BLAST on NCBI

transcript from alignment at scaffold_258:272554..275089+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055730 ID=TCONS_00055730|Name=TCONS_00055730|organism=Clytia hemisphaerica|type=transcript|length=2536bp|location=Sequence derived from alignment at scaffold_258:272554..275089+ (Clytia hemisphaerica)
GGATTGATGTTAACTAGTGGTAAAAGAATCAAGTTCTACACCTTAATATC
AACAATGGACTTGATTGCAAAAGCGCAAATCTTGTGTATGAACCAACATA
ACGGCTTCCATGGTTGCTCAACCTGCCTTATCAAAGGAGTTCATGAAAAC
AATGTTCAAGTATATCCATATTCAGAAGCAATCGATCAGAAGAAAAGTGC
AAAGAGAAATGATGAGAAGACTTTTAATGACGCCATAAAAGCCATCTCAT
CAGGACAAAAAGTAACTCATTCACATTTAAAGTATTATCATATCCTTTAg
cttgcttttctttttttatctttcattttaagtattttatttaaaaaaga
caTAAGAGTATTATTGTATTACACGTAATCTTTTTAGGTCAATGGTATCA
AAGGGCCATCTTCCCTTCACCTTATACCAGAATTCAGTATAACAGACGGT
GTTGTCCCTGACTACATGCATGGAGTTTTATTGGGTGTCGCAAAGGTCTT
AGTTGCATGCTGGTTTGACCCCTCAGAGCATAGAATcttttataaagaaa
acaggacATACCCAGAATATTATATTGGACACATGGTATGAATTTAAACT
AatgaaaattatgtttttctcaGATATCTTGCTTGCCGCGAGAACAGTTT
TTTTAATGTTCTAGCTAATTAACCTTTGTACACAGTCATAAGAGACTTTG
AATTTTATCTAACTATATCCAGATTCATGATGTAGATGTACGATTAGAAG
GTATGAGGCCAGTGGATTATATATCACGCAGACCAAGACCACTGTCTGGA
AACCTCGGACATCTAAAAGGTTTATAGTAAagtacttttacaaaaaatga
taaACTTGTTCTTTTAAATTCGAAATTCCTAACTACTTTTATGATAATgg
gtttcttttattttcatgatGTAATAACATTAGATCTTGAAAAAAGCAAC
TAACCAAACTATTCATGGAAAAAATGATTTATTGTGCTTTTTTTGCCTAC
ATTGTATCATTATTATGTTGTTCTAGCTAATGAATTAAGAACTTGGTTAC
TGTATTATTCGCTACCCTGTTTGGAAGGTATACTTTTGCCAATCTACTGG
AATCACCTAGCGCTGCTTGTAGAAGCAACACATATTTTGCTTGGCGAAAA
AATCAGCAAGACAGATTTGGAATGGGCAAATGATTGCTTACAACTCTTCt
acaaatattttagtgaattttATGGTATGATTTTTAAAACTCATTTGCAA
ACCTTTTTTTACCATAGAAAGCTCTCTTCTATTTAAagcattttataaaa
attttcatttttgattattgtAATGACTGAATCGTTTTATTaatagaaag
aagaaaaagtggATTGAATATCCACAATTTGATTCACCTTCCACTTTATG
TTGAGTACTGGGGACCTCTATGGGCATATTCATGTTTTGGTTTCGAAAGC
TTGAATGGATCAATTATTAAGCAGGTCCATGGAACGAAAAATGGTAGTAC
ACAGGTAATTCTATAAAGGTCACGTCCAAACCGTACTCTGTCCTGTCCTG
TCAGAATTTTTGTATTGAAAACTGACTTTCTTTTAGAATTTTGGTTGTTc
tcatttgttgttgttgatattTAATGATGTTAGATACTCTACAATTTGTT
TCCATAGATCATTAAGACTTTCAATGCACTCAAAGCAATCCATATCATGA
TGCAATCACAAAATACCAAGGAAATTGTGCGAAATGCCTTGTCATCCATG
CTTATGAAAAATCGTAGGTTAGCAAATTATTTATGTCTTATCTTTGTAAG
TATCATAAACTATATGCACAGAtttcaaataatcaaaataatgtTTCTTG
attatttgaatgtattttttctACATTAGAAACACAAATTCCTGGAAAGC
TGTAAATGAAAAATGTTCTGTTGGTGGAAAAGCAATGCATCTTGATAAGC
AAGAACTTGAAAAGTTCAAGTTGAAATCacattgtaaaaaatatttgcaG
CTTAAAAAAAAGGGAGTTTATTTCACCTCATATCAGTACAAGCGTGCCGT
TAAAACGGTTAACTATTTTGCTATGTGCCACAAGGACGGAGAAAAGGTCA
TTGCAAAAATTCACTATTTCGTTGTTGATGatgaaaaagtatatttttgt
GCACAAGAAGTACAAAGAAACAGTGAATGGAAAGTTGTTCCACAGTGGAA
TCGTAGTTGCATCATTAGAATCGAACCTAATGAAAGGTTAGAACATTTGA
TTTTGCTAATTCtttattaaatttaaaaaaccaAAATGATATGAAACAAA
TTTAAATTATGTATCCTTTGTATTCTTTCTTTACAGTGCTCCACTGTTTC
TCGCACCATCAGATTTCCTCAATGAAAAGCTATTTTTAATGGATGGCAAT
TTGGATTTTATGTGCGTTTGCAAGATTCCTAACACAGTTGAAGGAGATTG
ATATAACAAAGATGTGTTCTATTGGGTTTTTCACTAGACTTTTGTAATCT
TCTAATTAATAatgtaatttgtaaaatatattgGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035076XLOC_035076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055730-exon-scaffold_258-1491911889:272554..272814TCONS_00055730-exon-scaffold_258-1491911889:272554..272814Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1510915933:272554..272814TCONS_00055730-exon-scaffold_258-1510915933:272554..272814Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1575043694:272554..272814TCONS_00055730-exon-scaffold_258-1575043694:272554..272814Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1491911889:272941..273138TCONS_00055730-exon-scaffold_258-1491911889:272941..273138Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1510915933:272941..273138TCONS_00055730-exon-scaffold_258-1510915933:272941..273138Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1575043694:272941..273138TCONS_00055730-exon-scaffold_258-1575043694:272941..273138Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1491911889:273580..273777TCONS_00055730-exon-scaffold_258-1491911889:273580..273777Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1510915933:273580..273777TCONS_00055730-exon-scaffold_258-1510915933:273580..273777Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1575043694:273580..273777TCONS_00055730-exon-scaffold_258-1575043694:273580..273777Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1491911889:273900..274057TCONS_00055730-exon-scaffold_258-1491911889:273900..274057Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1510915933:273900..274057TCONS_00055730-exon-scaffold_258-1510915933:273900..274057Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1575043694:273900..274057TCONS_00055730-exon-scaffold_258-1575043694:273900..274057Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1491911889:274211..274320TCONS_00055730-exon-scaffold_258-1491911889:274211..274320Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1510915933:274211..274320TCONS_00055730-exon-scaffold_258-1510915933:274211..274320Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1575043694:274211..274320TCONS_00055730-exon-scaffold_258-1575043694:274211..274320Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1491911889:274433..274789TCONS_00055730-exon-scaffold_258-1491911889:274433..274789Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1510915933:274433..274789TCONS_00055730-exon-scaffold_258-1510915933:274433..274789Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1575043694:274433..274789TCONS_00055730-exon-scaffold_258-1575043694:274433..274789Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1491911889:274890..275089TCONS_00055730-exon-scaffold_258-1491911889:274890..275089Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1510915933:274890..275089TCONS_00055730-exon-scaffold_258-1510915933:274890..275089Clytia hemisphaericaexon
TCONS_00055730-exon-scaffold_258-1575043694:274890..275089TCONS_00055730-exon-scaffold_258-1575043694:274890..275089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:272554..275089 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36124	0.00357292	0	0	2.53689	3.3314	4.33759	4.46012	5.40607	5.42035	1.89786	4.16574	4.6166	3.8277	3.03868	2.93764	3.27451	3.51548	2.70296	2.19434	2.72168	3.61193	1.17997	2.54523	3.37422	3.18593	3.0992	2.4711	3.40016	2.67878
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top