Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055926 ID=TCONS_00055926|Name=TCONS_00055926|organism=Clytia hemisphaerica|type=transcript|length=3643bpRun BLAST on NCBI transcript from alignment at scaffold_266:182945..194194+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055926 ID=TCONS_00055926|Name=TCONS_00055926|organism=Clytia hemisphaerica|type=transcript|length=11250bp|location=Sequence derived from alignment at scaffold_266:182945..194194+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00055926 vs. Swiss-Prot (Human)
Match: MEGF6 (Multiple epidermal growth factor-like domains protein 6 OS=Homo sapiens GN=MEGF6 PE=1 SV=4) HSP 1 Score: 239.195 bits (609), Expect = 5.783e-64 Identity = 201/594 (33.84%), Postives = 283/594 (47.64%), Query Frame = 1 Query: 259 CNVGYKVDPKDSSKCLDIDECTTSPCQQDCKNTAGSFQ-CSCGVGYKVDPKDLKKC-LDIDECTTK--PCQQNCKNTPGSFQCSCGVGYKVDPKDLTKCLDIDECTTN--PCQQDC-KNTAGSFQCSCKGGYKVDPKDSTKCLDIDECSTK--PCQQNCKNTAGSFKCSCNVGYKVDPKDKTKCLDIDECTT--KSCQQNCKNTAGSFQCSCKDGYKVDPKDKTKCLDIDECTTNPCQQN-------CKNTVGSFQCSCRKGYKVDQKDSTKCLDIDECATKPC-HQNCKNTAGSFKCSCKVGYKVDPKNSSKCLDIDECTTK--PCQQDCKNTAGSFQCSCRDGYRVDPKDRTKCQPTCLE------NGCVQGVCSAPNFC---DCHPGFV---------------GKNCSSE---CSEDTFGKNCSQIC-LCKNGASCDKVNGSCTCTPGWIGEFCEKAC-ENSWGLGCENNFTCVANQTRATDHVTGRCECERGYTGINCEKKCVQGYYGERCRSKCGCISKNTLDCNHESGSCSCKIGWIGSNCSIPYCEGWTHGVNCNSTCQCVRKNTKSCDPLTGECSCNENWESTDC 1890 C G+ P D CL EC+ S C + GS Q C C G++ +C D+DEC T CQ C NTPGS+ C C G+++ D CL I+ C CQ C + T +C C+ G+++ +D C+ C+ + C C+ G +C C+VGY++ D C D+DEC C C NT GSF+C C GY++ D +C I+ N C+ N C +T C+C +GY++D D C+D+D+CA PC Q C N G ++C C GY++ + C D+DEC + C+ C N AGSFQCSC GYR+ +DR C P LE +G + V P+ D P G++ +E C +D+FG +CS C C+NG +C C C GW G C + C +++G C +F+C D VTG C C G +G NCE C +GYYG+ CR KC C ++ C+ G+C C G G C + C W G C+ CQCV+ +T+SCD G CSC + C Sbjct: 110 CCRGWMQQP-DEEGCLSA-ECSASLCFHGGRCVPGSAQPCHCPPGFQG-----PRCQYDVDECRTHNGGCQHRCVNTPGSYLCECKPGFRLH-TDSRTCLAINSCALGNGGCQHHCVQLTITRHRCQCRPGFQLQ-EDGRHCVRRSPCANRNGSCMHRCQVVRGLARCECHVGYQLA-ADGKACEDVDECAAGLAQCAHGCLNTQGSFKCVCHAGYELG-ADGRQCYRIEMEIVNSCEANNGGCSHGCSHTSAGPLCTCPRGYELD-TDQRTCIDVDDCADSPCCQQVCTNNPGGYECGCYAGYRLS-ADGCGCEDVDECASSRGGCEHHCTNLAGSFQCSCEAGYRLH-EDRRGCSP--LEEPMVDLDGELPFVRPLPHIAVLQDELPQLFQDDDVGADEEEAELRGEHTLTEKFVCLDDSFGHDCSLTCDDCRNGGTCLLGLDGCDCPEGWTGLICNETCPPDTFGKNC--SFSCSCQNGGTCDSVTGACRCPPGVSGTNCEDGCPKGYYGKHCRKKCNCANRGR--CHRLYGACLCDPGLYGRFCHL-TCPPWAFGPGCSEECQCVQPHTQSCDKRDGSCSCKAGFRGERC 682 HSP 2 Score: 152.525 bits (384), Expect = 4.811e-37 Identity = 106/310 (34.19%), Postives = 156/310 (50.32%), Query Frame = 1 Query: 166 QGNACPLDIDECTAK--PCQQNCKNTAGSFQCSCNVGYKVDPKDSSKCLDIDECTTS--PCQQDC-KNTAGSFQCSCGVGYKVDPKDLKKCLDIDECTTK--PCQQNCKNTPGSFQCSCGVGYKVDPKDLTKCLDIDECTTN--PCQQDCKNTAGSFQCSCKGGYKVDPKDSTKCLDID-------ECSTKPCQQNCKNTAGSFKCSCNVGYKVDPKDKTKCLDIDECT-TKSCQQNCKNTAGSFQCSCKDGYKVDPKDKTKCLDIDECTTN--PCQQNCKNTVGSFQCSCRKGYKVDQKDSTKCLDIDE 1038 QG C D+DEC CQ C NT GS+ C C G+++ DS CL I+ C CQ C + T +C C G+++ +D + C+ C + C C+ G +C C VGY++ D C D+DEC C C NT GSF+C C GY++ D +C I+ E + C C +T+ C+C GY++D D+ C+D+D+C + CQQ C N G ++C C GY++ D C D+DEC ++ C+ +C N GSFQCSC GY++ +D C ++E Sbjct: 154 QGPRCQYDVDECRTHNGGCQHRCVNTPGSYLCECKPGFRLH-TDSRTCLAINSCALGNGGCQHHCVQLTITRHRCQCRPGFQLQ-EDGRHCVRRSPCANRNGSCMHRCQVVRGLARCECHVGYQLA-ADGKACEDVDECAAGLAQCAHGCLNTQGSFKCVCHAGYELG-ADGRQCYRIEMEIVNSCEANNGGCSHGCSHTSAGPLCTCPRGYELD-TDQRTCIDVDDCADSPCCQQVCTNNPGGYECGCYAGYRLS-ADGCGCEDVDECASSRGGCEHHCTNLAGSFQCSCEAGYRL-HEDRRGCSPLEE 456 HSP 3 Score: 127.872 bits (320), Expect = 1.669e-29 Identity = 75/193 (38.86%), Postives = 97/193 (50.26%), Query Frame = 1 Query: 1315 NFCDCHPGFVGKNCSSECSEDTFGKNCSQICLCKNGASCDKVNGSCTCTPGWIGEFCEKACENS-WGLGCENNFTCVANQTRATDHVTGRCECERGYTGINCEKKCVQGYYGERCRSKCGCISKNTLDCNHESGSCSCKIGWIGSNCSIPYCEGWTHGVNCNSTCQCVRKNTKSCDPLTGECSCNENWESTDC 1890 C C G+VG C +C + FG C Q C C++GA+CD V+G+CTC GW G FCE AC +GL C + C A A D V G C C G G C + C YG C C C N C+ G C C GW+G +C + C +G NC +C C +N +CDP++G C+C E W C Sbjct: 887 GLCLCEAGYVGPRCEQQCPQGHFGPGCEQRCQCQHGAACDHVSGACTCPAGWRGTFCEHACPAGFFGLDCRSACNCTAGA--ACDAVNGSCLCPAGRRGPRCAETCPAHTYGHNCSQACACF--NGASCDPVHGQCHCAPGWMGPSC-LQACPAGLYGDNCRHSCLC--QNGGTCDPVSGHCACPEGWAGLAC 1072 HSP 4 Score: 119.783 bits (299), Expect = 4.688e-27 Identity = 85/235 (36.17%), Postives = 114/235 (48.51%), Query Frame = 1 Query: 1213 CSCRDGYRVDPKDRTKCQPTCLENGCVQ-------GVC-SAPNFCDCHPGFVGKNCSSECSEDTFGKNCSQICLCKNGASCDKVNGSCTCTPGWIGEFCEKAC-ENSWGLGCENNFTCVANQTRATDHVTGRCECERGYTGINCEKKCVQGYYGERCRSKCGCISKNTLDCNHESGSCSCKIGWIGSNCSIPYCEGWTHGVNCNSTCQCVRKNTKSCDPLTGECSCNENWESTDC 1890 CSC GY P + +C P GC Q G C +A C C GF+G +C+ C + FG NC+ +C C GA+CD V G+C C PG G CE+ C +N +G+GCE+ TC G C C G+TG +CE C G YG C +C C + +T C +G+C C G+ G C P C HG C C C ++ CDP++G C C + C Sbjct: 1191 CSCAAGYH-GPSCQQRCPPGRYGPGCEQLCGCLNGGSCDAATGACRCPTGFLGTDCNLTCPQGRFGPNCTHVCGCGQGAACDPVTGTCLCPPGRAGVRCERGCPQNRFGVGCEH--TCSCRNGGLCHASNGSCSCGLGWTGRHCELACPPGRYGAACHLECSCHNNST--CEPATGTCRCGPGFYGQACEHP-CPPGFHGAGCQGLCWC--QHGAPCDPISGRCLCPAGFHGHFC 1417 HSP 5 Score: 118.627 bits (296), Expect = 1.015e-26 Identity = 72/191 (37.70%), Postives = 98/191 (51.31%), Query Frame = 1 Query: 1321 CDCHPGFVGKNCSSECSEDTFGKNCSQICLCKNGASCDKVNGSCTCTPGWIGEFCEKAC-ENSWGLGCENNFTCVANQTRATDHVTGRCECERGYTGINCEKKCVQGYYGERCRSKCGCISKNTLDCNHESGSCSCKIGWIGSNCSIPYCEGWTHGVNCNSTCQCVRKNTKSCDPLTGECSCNENWESTDC 1890 C C PG++G +C C +G NC CLC+NG +CD V+G C C GW G CEK C GC ++ C+ D TGRC C G+TG C+ C++G++GE C +C C C+H +G+C C G+ GS C C + G +C CQC +N +C P TG CSC + C Sbjct: 1018 CHCAPGWMGPSCLQACPAGLYGDNCRHSCLCQNGGTCDPVSGHCACPEGWAGLACEKECLPRDVRAGCRHSGGCLNGGL--CDPHTGRCLCPAGWTGDKCQSPCLRGWFGEACAQRCSCPPGAA--CHHVTGACRCPPGFTGSGCEQ-ACPPGSFGEDCAQMCQCPGEN-PACHPATGTCSCAAGYHGPSC 1202 HSP 6 Score: 104.375 bits (259), Expect = 2.621e-22 Identity = 68/195 (34.87%), Postives = 98/195 (50.26%), Query Frame = 1 Query: 1321 CDCHPGFVGKNCSSECSEDTFGKNCSQIC-LCKNGASCDKVNGSCTCTPGWIGEFCEKACENSW-GLGCENNFTCVANQTRATDHVTGRCECERGYTGINCEKKCVQGYYGERCRSKCGCISKNTLDCNHESGSCSCKIGWIGSNCSIPYCEGWTHGVNCNSTCQCVRKNTKSCDPLTGECSCNENWESTDCSIA 1899 C C PG G++C ++C E +G C +IC C++ A CD G+C C PG++G C+ C W G C+ +C AN TG C C G+TG +C++ C G++G C C C S C+ SG C C+ G++G C C G C CQC ++ +CD ++G C+C W T C A Sbjct: 758 CRCPPGRTGEDCEADCPEGRWGLGCQEICPACQHAARCDPETGACLCLPGFVGSRCQDVCPAGWYGPSCQTRCSC-ANDGHCHP-ATGHCSCAPGWTGFSCQRACDTGHWGPDCSHPCNC-SAGHGSCDAISGLCLCEAGYVGPRCEQ-QCPQGHFGPGCEQRCQC--QHGAACDHVSGACTCPAGWRGTFCEHA 946 HSP 7 Score: 100.908 bits (250), Expect = 2.583e-21 Identity = 70/196 (35.71%), Postives = 97/196 (49.49%), Query Frame = 1 Query: 1321 CDCHPGFVGKNCSSECSEDTFGKNCSQICLCKNGASCDKVNGSC--TCTPGWIGEFCEKACE-NSWGLGCENNFTCVANQTRATDHVTGRCECERGYTGINCEKKCVQGYYGERCRSKCGCISKNTLDCNHESGSCSCKIGWIGSNCSIPYCEGWTHGVNCNSTCQCVRKNTKSCDPLTGECSCNENWESTDCSIA 1899 C C GF G+ C +EC FG C Q C C G +CD V+G C C G+ GE C + C ++G+ C ++ +C VTG+C C G TG +CE C +G +G C+ C ++ C+ E+G+C C G++GS C GW +G +C + C C N C P TG CSC W C A Sbjct: 671 CSCKAGFRGERCQAECELGYFGPGCWQACTCPVGVACDSVSGECGKRCPAGFQGEDCGQECPVGTFGVNCSSSCSCGGAPCHG---VTGQCRCPPGRTGEDCEADCPEGRWGLGCQEICP-ACQHAARCDPETGACLCLPGFVGSRCQDVCPAGW-YGPSCQTRCSCA--NDGHCHPATGHCSCAPGWTGFSCQRA 859 HSP 8 Score: 98.2117 bits (243), Expect = 1.859e-20 Identity = 85/286 (29.72%), Postives = 119/286 (41.61%), Query Frame = 1 Query: 1204 SFQCSCRDGY-------RVDPKD-RTKCQPTCLENGCVQGVCSAPN--FCDCHPGFVGKNCSSECSEDTFGKNCSQICLCKNGASCDKVNGSCTCTPGWIGEFCEKACE-NSWGLGCENNFTCVANQTRATDHVTGRCECERGYTGINCEKKCVQGYYGERCRSKCGCISKNTLDCNHESGSCSCKIGWIGSNCSIPYCEGWTHGVNCNSTCQCVRKNTKSCDPLTG-------------------------------------------ECSCNENWESTDCSIA 1899 S C+C +G+ P+D R C+ + GC+ G P+ C C G+ G C S C FG+ C+Q C C GA+C V G+C C PG+ G CE+AC S+G C C + A TG C C GY G +C+++C G YG C CGC+ N C+ +G+C C G++G++C++ C G NC C C +CDP+TG CSC W C +A Sbjct: 1058 SGHCACPEGWAGLACEKECLPRDVRAGCRHS---GGCLNGGLCDPHTGRCLCPAGWTGDKCQSPCLRGWFGEACAQRCSCPPGAACHHVTGACRCPPGFTGSGCEQACPPGSFGEDCAQMCQC-PGENPACHPATGTCSCAAGYHGPSCQQRCPPGRYGPGCEQLCGCL--NGGSCDAATGACRCPTGFLGTDCNL-TCPQGRFGPNCTHVCGC--GQGAACDPVTGTCLCPPGRAGVRCERGCPQNRFGVGCEHTCSCRNGGLCHASNGSCSCGLGWTGRHCELA 1334 HSP 9 Score: 97.8265 bits (242), Expect = 2.816e-20 Identity = 73/194 (37.63%), Postives = 94/194 (48.45%), Query Frame = 1 Query: 1321 CDCHPGFVGKNCSSECSEDTFGKNCSQICLCKNGASCDKVNGSCTCTPGWIGEFCEKAC-ENSWGLGCENNFTCVANQTRATDHVTGRCECERGYTGINCEKKCVQGYYGERCRSKCGCISKNTLDCNHESGSCSCKIGWIGSNCSIPYCEGWTHGVNCNSTCQCVRKNTKSCDPLTGECS--CNENWESTDCS 1893 CDC G+ G C+ C DTFGKNCS C C+NG +CD V G+C C PG G CE C + +G C C AN+ R + G C C+ G G C C +G C +C C+ +T C+ GSCSCK G+ G C CE G C C C +CD ++GEC C ++ DC Sbjct: 540 CDCPEGWTGLICNETCPPDTFGKNCSFSCSCQNGGTCDSVTGACRCPPGVSGTNCEDGCPKGYYGKHCRKKCNC-ANRGR-CHRLYGACLCDPGLYGRFCHLTCPPWAFGPGCSEECQCVQPHTQSCDKRDGSCSCKAGFRGERCQA-ECELGYFGPGCWQACTC--PVGVACDSVSGECGKRCPAGFQGEDCG 728 HSP 10 Score: 92.8189 bits (229), Expect = 7.657e-19 Identity = 76/250 (30.40%), Postives = 115/250 (46.00%), Query Frame = 1 Query: 1222 RDGYRVD---PKDR--TKCQPTC-LENGCVQGVCSAPNF-CDCHPGFVGKNCSSECSEDTFGKNCSQICLCKNGASCDKVNGSCTCTPGWIGEFCEKACENSW-GLGCENNFTCVANQTRATDHVTGRCECERGYTGINCEKKCVQGYYGERCRSKCGCISKNTLDCNHESGSCSCKIGWIGSNCSIPYCEGWTHGVNCNSTCQCVRKNTKSCDPLTGECSCNENWESTDCSIAIIRTSKAIQTLKDPLV 1947 R G R + P++R C+ TC NG G+C A N C C G+ G++C C +G C C C N ++C+ G+C C PG+ G+ CE C + G GC+ C D ++GRC C G+ G CE+ C G +GE C +C C C+ +G C C G G+ C++ C G +C C C CDP++G+C C + + C R ++ ++P + Sbjct: 1283 RAGVRCERGCPQNRFGVGCEHTCSCRNG---GLCHASNGSCSCGLGWTGRHCELACPPGRYGAACHLECSCHNNSTCEPATGTCRCGPGFYGQACEHPCPPGFHGAGCQG--LCWCQHGAPCDPISGRCLCPAGFHGHFCERGCEPGSFGEGCHQRCDC--DGGAPCDPVTGLCLCPPGRSGATCNL-DCRRGQFGPSCTLHCDC--GGGADCDPVSGQCHCVDGYMGPTC-----REGGPLRLPENPSL 1517 The following BLAST results are available for this feature:
BLAST of TCONS_00055926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|