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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055934 ID=TCONS_00055934|Name=TCONS_00055934|organism=Clytia hemisphaerica|type=transcript|length=2015bp
AACCTACTTCTTTTGCCCTTTAATAAAATTGAgattaaaactaaaatatt
AGATTTTAGCCCACTCTTGTTTTGGCACTTCAACTCATCTCTAACTTATG
CCTAAAAGTTTTCAGGGACAGACCAACTCAACTAACATTTAAATTTTGGG
TGGTTTTAGATGGTGCTTAGACTTTGTTATTTTGTAGGACCTGGAAACCT
TTGTTGCCTGTGCAATGTTTGATTAATAAAAGTTTTATTCTTTCAATTGT
GACCACTGGCCCGTTACTTTTCTTTAACCATTGATAAGTTTTGAAGCTAG
TTTATCTgtgatcaaatttaatttttttctcatttagaTTTAGAGTTTTT
CAAAGATGGCTAGCAAAACAATTGAAACCAGTGAAGCGGCAAGTTGcgat
aaagaaaatttaaatattttatcacGACCCACTAGAACAAGGAAGCCAGT
ACTCACAGAAATTCTAAGCTCAAGTGACATCGAACTTAGTCCTCCCTTAA
ACTATGATGCATTAGAGGAGAATGATGAATATGATCCCAAAAAAAATGAA
TCTGACGATGATTCCGATTTGCCTTCTACACCTCTCACAAAGAAAATAAC
TAAACCAACGAGGGGACGTGGTAGAGGTCGTGGTACAGCATCAACTCGTG
GACGTGGGACATCATTGACTTCTGGGCGGGGAGCAGCAAAAGGAAGTGGA
ACACCAAAAGTAGGACGTGGTAGTCGCAAAAGTNGACTTCTGGGCGGGGA
ACAGCAAAAGGAAGTGGAACACCAAAAGTAGGACGTGGTAGTCGCAAAAG
TGGAGAATTTTCTACAAAAGCATCTCAAAAATtattctacaaaaagttga
gtGGGCTAGACAACAAAACCTTTGTTAGTTTGATCAAAGATCTCATAGAA
AGTGAGCAAGTCTCAATGACTACAGTTAACAATAAAATAAACTCCAACAT
TGATATTGATTCAATTATGAAGGGCTTAGAGAAAGCCAAGAAGGCTATTT
TCAAAGCCATGCCAAACCCATGGAGATTTGGAGGAGGAAGTGCTACTTTT
CAAAGAAATGATTTTGCACGTAAGCGATGTACCTCTTCCCAAAGTGCATT
CAAAACTTTATTCAGAAATAACACAACCAATTTCAAAGGGTTGGATAATG
GTGACCTCATTATTGATTTTGTCTTGAAAGCTTTCCCTGTTGTTTCTGAG
CTCCCACAATGGATTGGTTGTTTTAAACCTTTAAGCTTTCTGAATGATTG
TCTGGATATGTTAGGTGGTCTACTTATGCAAGCTATTCCAAAGCTCTCAA
ATGAAAGACTGCAAGATATTGTTGATGAAGTTACAcgtttctcatctttt
acaggTGAAATGGGTGTCTCtgttgaaaatgaaaagatgGGAGAGGCTTT
AGCTTTACTTAAGTCGAAAATTTGATGCAAAAGACTTACGAAAATGTGTG
TATGTATATTATGTACAATTTGTGTTTCATTTCAAAACAGATATATTTGA
TTCATTATTAggcttttaaacatttttattatatttttaaatgTAGTAAT
CATATGTGATATATATTCCATTCTATATTTActcattttcatcttttacA
GGTGAAATGTCATTTAAATTGGCATTATTAGATTCTAAGATTTGATCGTA
aatttaagtttaaaaaaacatgtatattttTTGTGTATAATATTTCAAGA
tatatttttaggttttcaaacttttcaaagatttttaaatgtaaatagtT
CACAAGGTGCCTAATTTTATCATTATGTGAGTTAGGTATTTTAGGTCCTC
ATATATTTATGATAGGAGTATTTTAGTTTTATTTCAACGTCActattgtt
tttttcaaaaaagatttataaattagGATTTTTGTTTTCTCTCGCAAAGA
AACTCAATTTAGCACTGTAAATGCACATTTATCAGTAGGACATGTCGTTg
ccaaaagtcaattttttcgaaaattgagtcATATAAagtcatatttagaa
ttttataaattcttg Run BLAST on NCBI transcript from alignment at scaffold_266:320339..322353+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055934 ID=TCONS_00055934|Name=TCONS_00055934|organism=Clytia hemisphaerica|type=transcript|length=2015bp|location=Sequence derived from alignment at scaffold_266:320339..322353+ (Clytia hemisphaerica)
AACCTACTTCTTTTGCCCTTTAATAAAATTGAgattaaaactaaaatatt
AGATTTTAGCCCACTCTTGTTTTGGCACTTCAACTCATCTCTAACTTATG
CCTAAAAGTTTTCAGGGACAGACCAACTCAACTAACATTTAAATTTTGGG
TGGTTTTAGATGGTGCTTAGACTTTGTTATTTTGTAGGACCTGGAAACCT
TTGTTGCCTGTGCAATGTTTGATTAATAAAAGTTTTATTCTTTCAATTGT
GACCACTGGCCCGTTACTTTTCTTTAACCATTGATAAGTTTTGAAGCTAG
TTTATCTgtgatcaaatttaatttttttctcatttagaTTTAGAGTTTTT
CAAAGATGGCTAGCAAAACAATTGAAACCAGTGAAGCGGCAAGTTGcgat
aaagaaaatttaaatattttatcacGACCCACTAGAACAAGGAAGCCAGT
ACTCACAGAAATTCTAAGCTCAAGTGACATCGAACTTAGTCCTCCCTTAA
ACTATGATGCATTAGAGGAGAATGATGAATATGATCCCAAAAAAAATGAA
TCTGACGATGATTCCGATTTGCCTTCTACACCTCTCACAAAGAAAATAAC
TAAACCAACGAGGGGACGTGGTAGAGGTCGTGGTACAGCATCAACTCGTG
GACGTGGGACATCATTGACTTCTGGGCGGGGAGCAGCAAAAGGAAGTGGA
ACACCAAAAGTAGGACGTGGTAGTCGCAAAAGTNGACTTCTGGGCGGGGA
ACAGCAAAAGGAAGTGGAACACCAAAAGTAGGACGTGGTAGTCGCAAAAG
TGGAGAATTTTCTACAAAAGCATCTCAAAAATtattctacaaaaagttga
gtGGGCTAGACAACAAAACCTTTGTTAGTTTGATCAAAGATCTCATAGAA
AGTGAGCAAGTCTCAATGACTACAGTTAACAATAAAATAAACTCCAACAT
TGATATTGATTCAATTATGAAGGGCTTAGAGAAAGCCAAGAAGGCTATTT
TCAAAGCCATGCCAAACCCATGGAGATTTGGAGGAGGAAGTGCTACTTTT
CAAAGAAATGATTTTGCACGTAAGCGATGTACCTCTTCCCAAAGTGCATT
CAAAACTTTATTCAGAAATAACACAACCAATTTCAAAGGGTTGGATAATG
GTGACCTCATTATTGATTTTGTCTTGAAAGCTTTCCCTGTTGTTTCTGAG
CTCCCACAATGGATTGGTTGTTTTAAACCTTTAAGCTTTCTGAATGATTG
TCTGGATATGTTAGGTGGTCTACTTATGCAAGCTATTCCAAAGCTCTCAA
ATGAAAGACTGCAAGATATTGTTGATGAAGTTACAcgtttctcatctttt
acaggTGAAATGGGTGTCTCtgttgaaaatgaaaagatgGGAGAGGCTTT
AGCTTTACTTAAGTCGAAAATTTGATGCAAAAGACTTACGAAAATGTGTG
TATGTATATTATGTACAATTTGTGTTTCATTTCAAAACAGATATATTTGA
TTCATTATTAggcttttaaacatttttattatatttttaaatgTAGTAAT
CATATGTGATATATATTCCATTCTATATTTActcattttcatcttttacA
GGTGAAATGTCATTTAAATTGGCATTATTAGATTCTAAGATTTGATCGTA
aatttaagtttaaaaaaacatgtatattttTTGTGTATAATATTTCAAGA
tatatttttaggttttcaaacttttcaaagatttttaaatgtaaatagtT
CACAAGGTGCCTAATTTTATCATTATGTGAGTTAGGTATTTTAGGTCCTC
ATATATTTATGATAGGAGTATTTTAGTTTTATTTCAACGTCActattgtt
tttttcaaaaaagatttataaattagGATTTTTGTTTTCTCTCGCAAAGA
AACTCAATTTAGCACTGTAAATGCACATTTATCAGTAGGACATGTCGTTg
ccaaaagtcaattttttcgaaaattgagtcATATAAagtcatatttagaa
ttttataaattcttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055934-exon-scaffold_266-1491911889:320339..322353 | TCONS_00055934-exon-scaffold_266-1491911889:320339..322353 | Clytia hemisphaerica | exon |
| TCONS_00055934-exon-scaffold_266-1510915933:320339..322353 | TCONS_00055934-exon-scaffold_266-1510915933:320339..322353 | Clytia hemisphaerica | exon |
| TCONS_00055934-exon-scaffold_266-1575043694:320339..322353 | TCONS_00055934-exon-scaffold_266-1575043694:320339..322353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:320339..322353 + |
Blast
The following BLAST results are available for this feature:
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