TCONS_00055977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055977
Unique NameTCONS_00055977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055977 ID=TCONS_00055977|Name=TCONS_00055977|organism=Clytia hemisphaerica|type=transcript|length=1737bp
AAATTAAgtgcacccttattgaaactTCGTCCGCGAAAAGACTTGGTAGA
AACACTCCTTCATGAAATGATTCACGCTTTACTGTTTGTCACAGATAATA
ACAAGgATCACGATGGACATGGACCAGAATTTCACAAACACATGTACCGA
ATCAATAAAGAGACTGGGACCAACATTTCAgtGGATCACCATAGACAACA
TTGGTGGCGTTGTGATGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCA
TCGTCAGGCGTGCTATGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGG
AATGACCACAAACAAAAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCC
AGAGAAACCGGTGAAGCAATCTaagaaaagtaaaaagttaGAAGAAACTG
GACAAAAGCTTGGTTCCTCAAGTTCTGAAAGCAACAAAAATAATAAGAAT
GCAATCACAAACTGGTTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTC
GTCTAATTCATCTAACTCCATCAGCATAGATTGTGAAGAAGATCTGAAAC
CTCCGATAAACCCGTGGGCAGACGATAGTTACACCAGTAATTCAAAGAAC
AGTAAACCAACAAGCAAaactaactctaaccctaagaCAAAAAACAATAC
TTCGAACCATGGAAACCAAAACAAAGGTAAATACCCAGCAGGTTCAACAG
CCGTTAAAGGAGGTGGGTCGCGAACTTCAACTATCACCTCCAAGGGGAAG
AACCCTCCGACCAATGAGAATGACATTTATCGGAGCTCCTCCACAGGTGC
TTCAAGTAATATCTACGGCTTCAAAATGTCTGCTAATAACAAAGAAGACT
CAGCAAAGCAACCCTTAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGC
TCAACAAATGACGAACCTTCGGGAAACAGTGgacgagaaaattttttgaa
acgatTAGAAAATAACATGAAAGGGAATACTCAAAGAAAACCCTCAACAA
ATTCATCACAAATTAGTATCCCTCCCTCTTCAAACACTTTCCGTAAACCA
AAAGATTCTGATTTCTCAATGAAAAACCAAAATAAGGACAGAACTCAAAA
GAAAGAAACCACTGAAAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAA
ATCCTacaacaaaccaaaacaagTCTCCCTATACTAACAAACAACCACAT
AACGCACAATCAAATTTAACAAACACTAAACGAAACCTTTCGTCTTCTTC
TTCACAAAACTCTTCATCAACCTCACCGAAAAAGActaaattttcgaaag
aaacGCACATGGTTATTTCTTCAGACGAAGAGGACAATGTACAGCAACAA
CAAAATCTTGTGGATTGCCCTGCGTGTCCTATGAGAGTTCCtgaacatct
tttgaatgaacacttGGATGAATGCTTAACTTCTTGACACTTCTACCGAT
TGAGAAGCTTCAACCCTACCCAGACCGCAATTTTAACGAGTTTTGTACAG
TATGTGTTGTTGGGACTTCAGTTATTTTCGGACCCTCATTCTTtcgtttc
aatgtttttttttagtttttttagtcatttttaccAGGGTCATCTTGTAT
GTAAGATCATCGTTGCCTTACTGCAAGTATGACTCGTtatattttgtttc
attttttactGTGAATTtagaaaactgaaaatatttattttttatcccAA
AATTATATCAACGATTTCATGAATCATAGAGCCTCGC
Run BLAST on NCBI

transcript from alignment at scaffold_266:117022..119643-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055977 ID=TCONS_00055977|Name=TCONS_00055977|organism=Clytia hemisphaerica|type=transcript|length=2622bp|location=Sequence derived from alignment at scaffold_266:117022..119643- (Clytia hemisphaerica)
AAATTAAGTGCACCCTTATTGAAACTTCGTCCGCGAAAAGACTTGGTAGA AACACTCCTTGTAAGAATACTCTCCTTGTACAATTCTTCCTCTGTCGGGA TTACTATTCACGGCCATGTCTGTCTCTGAAAACTTATTAAGTGAACGTAG TTAAAACTAAATTGAAATTGAATTTAATTGAAACCTTTGTTATTAAATTC ATTTTCGAAAAGCTGGTAAAATTGTTTTTTACTTTTCAGCATGAAATGAT TCACGCTTTACTGTTTGTCACAGATAATAACAAGGTACTGTTCTGTTCTT GTTTATTCGTATTTCCGGGCGGGGGGGGGGGGGGGGGGGGGGGGCNAATA GCACTTTCTGTTGGTTTCTTTAAAGAAGGTAACACAAATTGGTTTTCCGT TGGTTAATGTTCTAATAAAAACTGTCGTGTCCATTTTCGAAACCTTGCTA TCGATTTCGCCCTCGTTAGTTGAATCATAACATGGATCTACATTATGAAC AAAATGTCACGCCTATCCCGACCTTATTTCCGTAGATATGAGATGCAGAC CATTCTACACTTTTTCACTTTTCTTTTGTAGGATCACGATGGACATGGAC CAGAATTTCACAAACACATGTACCGAATCAATAAAGAGACTGGGACCAAC ATTTCAGTATGAATCTTTTCATTATGTTGTGTCGACCATCAAAATTTATG CCAATATTTCAGAGATTTTCCATTTTCACGCGCTTTGAAAATTCCTACAG TGTCTTCTTTCGTGATTTAACCAACAATTAGCTTGTGCGGATGCAAAATT GAGTCCAAATTGATATGACAATCTAAAATATTTGACTTTGATTTCATTTT ATCCACTTTTTAGGTTTATCATTCTTTTCACGACGAGGTAAGCAAGATAT TTGTTTACTATTTGATCTGGATGTCCNTTATCATTCTTTTCACGACGAGG TAAGCAAGATATTTGTTTACTATTTGATCTGGATGTCATTCGCCCATTAA AACCTATTGCATGAACTTCAGTGTGTTTTTTTCAAGCATTGCATCGTAAA TTTATTTTCTTTTAGGTGGATCACCATAGACAACATTGGTGGCGTTGTGA TGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTA TGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGGAATGACCACAAACAA AAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCCAGAGAAACCGGTGAA GCAATCTAAGAAAAGTAAAAAGTTAGAAGAAACTGGACAAAAGCTTGGTT CCTCAAGTTCTGAAAGCAACAAAAATAATAAGAATGCAATCACAAACTGG TTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTCGTCTAATTCATCTAA CTCCATCAGCATAGATTGTGAAGAAGATCTGAAACCTCCGATAAACCCGT GGGCAGACGATAGTTACACCAGTAATTCAAAGAACAGTAAACCAACAAGC AAAACTAACTCTAACCCTAAGACAAAAAACAATACTTCGAACCATGGAAA CCAAAACAAAGGTAAATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTG GGTCGCGAACTTCAACTATCACCTCCAAGGGGAAGAACCCTCCGACCAAT GAGAATGACATTTATCGGAGCTCCTCCACAGGTGCTTCAAGTAATATCTA CGGCTTCAAAATGTCTGCTAATAACAAAGAAGACTCAGCAAAGCAACCCT TAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGCTCAACAAATGACGAA CCTTCGGGAAACAGTGGACGAGAAAATTTTTTGAAACGATTAGAAAATAA CATGAAAGGGAATACTCAAAGAAAACCCTCAACAAATTCATCACAAATTA GTATCCCTCCCTCTTCAAACACTTTCCGTAAACCAAAAGATTCTGATTTC TCAATGAAAAACCAAAATAAGGACAGAACTCAAAAGAAAGAAACCACTGA AAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAAATCCTACAACAAACC AAAACAAGTCTCCCTATACTAACAAACAACCACATAACGCACAATCAAAT TTAACAAACACTAAACGAAACCTTTCGTCTTCTTCTTCACAAAACTCTTC ATCAACCTCACCGAAAAAGACTAAATTTTCGAAAGAAACGCACATGGTTA TTTCTTCAGACGAAGAGGACAATGTACAGCAACAACAAAATCTTGTGGAT TGCCCTGCGTGTCCTATGAGAGTTCCTGAACATCTTTTGAATGAACACTT GGATGAATGCTTAACTTCTTGACACTTCTACCGATTGAGAAGCTTCAACC CTACCCAGACCGCAATTTTAACGAGTTTTGTACAGTATGTGTTGTTGGGA CTTCAGTTATTTTCGGACCCTCATTCTTTCGTTTCAATGTTTTTTTTTAG TTTTTTTAGTCATTTTTACCAGGGTCATCTTGTATGTAAGATCATCGTTG CCTTACTGCAAGTATGACTCGTTATATTTTGTTTCATTTTTTACTGTGAA TTTAGAAAACTGAAAATATTTATTTTTTATCCCAAAATTATATCAACGAT TTCATGAATCATAGAGCCTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035235XLOC_035235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055977-exon-scaffold_266-1575043694:119584..119643TCONS_00055977-exon-scaffold_266-1575043694:119584..119643Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1575043694:119360..119404TCONS_00055977-exon-scaffold_266-1575043694:119360..119404Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1575043694:118988..119062TCONS_00055977-exon-scaffold_266-1575043694:118988..119062Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1575043694:117022..118578TCONS_00055977-exon-scaffold_266-1575043694:117022..118578Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1510915933:119584..119643TCONS_00055977-exon-scaffold_266-1510915933:119584..119643Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1510915933:119360..119404TCONS_00055977-exon-scaffold_266-1510915933:119360..119404Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1510915933:118988..119062TCONS_00055977-exon-scaffold_266-1510915933:118988..119062Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1510915933:117022..118578TCONS_00055977-exon-scaffold_266-1510915933:117022..118578Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1491911889:119584..119643TCONS_00055977-exon-scaffold_266-1491911889:119584..119643Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1491911889:119360..119404TCONS_00055977-exon-scaffold_266-1491911889:119360..119404Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1491911889:118988..119062TCONS_00055977-exon-scaffold_266-1491911889:118988..119062Clytia hemisphaericaexon
TCONS_00055977-exon-scaffold_266-1491911889:117022..118578TCONS_00055977-exon-scaffold_266-1491911889:117022..118578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:117022..119643 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.0281698 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 5.75052e-08 0 0.0281698 0 0 0 0 0 0 0 0 0 4.86042e-09 0 0 0 0 0 0 0 0 7.04433e-10 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
2004006008001000120014001600Expect = 2.25e-48 / Id = 63.93SequenceSPRTN
Match NameE-valueIdentityDescription
SPRTN2.251e-4863.93SprT-like domain-containing protein Spartan OS=Hom... [more]
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