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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055977 ID=TCONS_00055977|Name=TCONS_00055977|organism=Clytia hemisphaerica|type=transcript|length=1737bp
AAATTAAgtgcacccttattgaaactTCGTCCGCGAAAAGACTTGGTAGA
AACACTCCTTCATGAAATGATTCACGCTTTACTGTTTGTCACAGATAATA
ACAAGgATCACGATGGACATGGACCAGAATTTCACAAACACATGTACCGA
ATCAATAAAGAGACTGGGACCAACATTTCAgtGGATCACCATAGACAACA
TTGGTGGCGTTGTGATGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCA
TCGTCAGGCGTGCTATGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGG
AATGACCACAAACAAAAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCC
AGAGAAACCGGTGAAGCAATCTaagaaaagtaaaaagttaGAAGAAACTG
GACAAAAGCTTGGTTCCTCAAGTTCTGAAAGCAACAAAAATAATAAGAAT
GCAATCACAAACTGGTTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTC
GTCTAATTCATCTAACTCCATCAGCATAGATTGTGAAGAAGATCTGAAAC
CTCCGATAAACCCGTGGGCAGACGATAGTTACACCAGTAATTCAAAGAAC
AGTAAACCAACAAGCAAaactaactctaaccctaagaCAAAAAACAATAC
TTCGAACCATGGAAACCAAAACAAAGGTAAATACCCAGCAGGTTCAACAG
CCGTTAAAGGAGGTGGGTCGCGAACTTCAACTATCACCTCCAAGGGGAAG
AACCCTCCGACCAATGAGAATGACATTTATCGGAGCTCCTCCACAGGTGC
TTCAAGTAATATCTACGGCTTCAAAATGTCTGCTAATAACAAAGAAGACT
CAGCAAAGCAACCCTTAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGC
TCAACAAATGACGAACCTTCGGGAAACAGTGgacgagaaaattttttgaa
acgatTAGAAAATAACATGAAAGGGAATACTCAAAGAAAACCCTCAACAA
ATTCATCACAAATTAGTATCCCTCCCTCTTCAAACACTTTCCGTAAACCA
AAAGATTCTGATTTCTCAATGAAAAACCAAAATAAGGACAGAACTCAAAA
GAAAGAAACCACTGAAAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAA
ATCCTacaacaaaccaaaacaagTCTCCCTATACTAACAAACAACCACAT
AACGCACAATCAAATTTAACAAACACTAAACGAAACCTTTCGTCTTCTTC
TTCACAAAACTCTTCATCAACCTCACCGAAAAAGActaaattttcgaaag
aaacGCACATGGTTATTTCTTCAGACGAAGAGGACAATGTACAGCAACAA
CAAAATCTTGTGGATTGCCCTGCGTGTCCTATGAGAGTTCCtgaacatct
tttgaatgaacacttGGATGAATGCTTAACTTCTTGACACTTCTACCGAT
TGAGAAGCTTCAACCCTACCCAGACCGCAATTTTAACGAGTTTTGTACAG
TATGTGTTGTTGGGACTTCAGTTATTTTCGGACCCTCATTCTTtcgtttc
aatgtttttttttagtttttttagtcatttttaccAGGGTCATCTTGTAT
GTAAGATCATCGTTGCCTTACTGCAAGTATGACTCGTtatattttgtttc
attttttactGTGAATTtagaaaactgaaaatatttattttttatcccAA
AATTATATCAACGATTTCATGAATCATAGAGCCTCGC Run BLAST on NCBI transcript from alignment at scaffold_266:117022..119643- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055977 ID=TCONS_00055977|Name=TCONS_00055977|organism=Clytia hemisphaerica|type=transcript|length=2622bp|location=Sequence derived from alignment at scaffold_266:117022..119643- (Clytia hemisphaerica)
AAATTAAGTGCACCCTTATTGAAACTTCGTCCGCGAAAAGACTTGGTAGA
AACACTCCTTGTAAGAATACTCTCCTTGTACAATTCTTCCTCTGTCGGGA
TTACTATTCACGGCCATGTCTGTCTCTGAAAACTTATTAAGTGAACGTAG
TTAAAACTAAATTGAAATTGAATTTAATTGAAACCTTTGTTATTAAATTC
ATTTTCGAAAAGCTGGTAAAATTGTTTTTTACTTTTCAGCATGAAATGAT
TCACGCTTTACTGTTTGTCACAGATAATAACAAGGTACTGTTCTGTTCTT
GTTTATTCGTATTTCCGGGCGGGGGGGGGGGGGGGGGGGGGGGGCNAATA
GCACTTTCTGTTGGTTTCTTTAAAGAAGGTAACACAAATTGGTTTTCCGT
TGGTTAATGTTCTAATAAAAACTGTCGTGTCCATTTTCGAAACCTTGCTA
TCGATTTCGCCCTCGTTAGTTGAATCATAACATGGATCTACATTATGAAC
AAAATGTCACGCCTATCCCGACCTTATTTCCGTAGATATGAGATGCAGAC
CATTCTACACTTTTTCACTTTTCTTTTGTAGGATCACGATGGACATGGAC
CAGAATTTCACAAACACATGTACCGAATCAATAAAGAGACTGGGACCAAC
ATTTCAGTATGAATCTTTTCATTATGTTGTGTCGACCATCAAAATTTATG
CCAATATTTCAGAGATTTTCCATTTTCACGCGCTTTGAAAATTCCTACAG
TGTCTTCTTTCGTGATTTAACCAACAATTAGCTTGTGCGGATGCAAAATT
GAGTCCAAATTGATATGACAATCTAAAATATTTGACTTTGATTTCATTTT
ATCCACTTTTTAGGTTTATCATTCTTTTCACGACGAGGTAAGCAAGATAT
TTGTTTACTATTTGATCTGGATGTCCNTTATCATTCTTTTCACGACGAGG
TAAGCAAGATATTTGTTTACTATTTGATCTGGATGTCATTCGCCCATTAA
AACCTATTGCATGAACTTCAGTGTGTTTTTTTCAAGCATTGCATCGTAAA
TTTATTTTCTTTTAGGTGGATCACCATAGACAACATTGGTGGCGTTGTGA
TGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTA
TGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGGAATGACCACAAACAA
AAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCCAGAGAAACCGGTGAA
GCAATCTAAGAAAAGTAAAAAGTTAGAAGAAACTGGACAAAAGCTTGGTT
CCTCAAGTTCTGAAAGCAACAAAAATAATAAGAATGCAATCACAAACTGG
TTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTCGTCTAATTCATCTAA
CTCCATCAGCATAGATTGTGAAGAAGATCTGAAACCTCCGATAAACCCGT
GGGCAGACGATAGTTACACCAGTAATTCAAAGAACAGTAAACCAACAAGC
AAAACTAACTCTAACCCTAAGACAAAAAACAATACTTCGAACCATGGAAA
CCAAAACAAAGGTAAATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTG
GGTCGCGAACTTCAACTATCACCTCCAAGGGGAAGAACCCTCCGACCAAT
GAGAATGACATTTATCGGAGCTCCTCCACAGGTGCTTCAAGTAATATCTA
CGGCTTCAAAATGTCTGCTAATAACAAAGAAGACTCAGCAAAGCAACCCT
TAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGCTCAACAAATGACGAA
CCTTCGGGAAACAGTGGACGAGAAAATTTTTTGAAACGATTAGAAAATAA
CATGAAAGGGAATACTCAAAGAAAACCCTCAACAAATTCATCACAAATTA
GTATCCCTCCCTCTTCAAACACTTTCCGTAAACCAAAAGATTCTGATTTC
TCAATGAAAAACCAAAATAAGGACAGAACTCAAAAGAAAGAAACCACTGA
AAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAAATCCTACAACAAACC
AAAACAAGTCTCCCTATACTAACAAACAACCACATAACGCACAATCAAAT
TTAACAAACACTAAACGAAACCTTTCGTCTTCTTCTTCACAAAACTCTTC
ATCAACCTCACCGAAAAAGACTAAATTTTCGAAAGAAACGCACATGGTTA
TTTCTTCAGACGAAGAGGACAATGTACAGCAACAACAAAATCTTGTGGAT
TGCCCTGCGTGTCCTATGAGAGTTCCTGAACATCTTTTGAATGAACACTT
GGATGAATGCTTAACTTCTTGACACTTCTACCGATTGAGAAGCTTCAACC
CTACCCAGACCGCAATTTTAACGAGTTTTGTACAGTATGTGTTGTTGGGA
CTTCAGTTATTTTCGGACCCTCATTCTTTCGTTTCAATGTTTTTTTTTAG
TTTTTTTAGTCATTTTTACCAGGGTCATCTTGTATGTAAGATCATCGTTG
CCTTACTGCAAGTATGACTCGTTATATTTTGTTTCATTTTTTACTGTGAA
TTTAGAAAACTGAAAATATTTATTTTTTATCCCAAAATTATATCAACGAT
TTCATGAATCATAGAGCCTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055977-exon-scaffold_266-1575043694:119584..119643 | TCONS_00055977-exon-scaffold_266-1575043694:119584..119643 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1575043694:119360..119404 | TCONS_00055977-exon-scaffold_266-1575043694:119360..119404 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1575043694:118988..119062 | TCONS_00055977-exon-scaffold_266-1575043694:118988..119062 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1575043694:117022..118578 | TCONS_00055977-exon-scaffold_266-1575043694:117022..118578 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1510915933:119584..119643 | TCONS_00055977-exon-scaffold_266-1510915933:119584..119643 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1510915933:119360..119404 | TCONS_00055977-exon-scaffold_266-1510915933:119360..119404 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1510915933:118988..119062 | TCONS_00055977-exon-scaffold_266-1510915933:118988..119062 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1510915933:117022..118578 | TCONS_00055977-exon-scaffold_266-1510915933:117022..118578 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1491911889:119584..119643 | TCONS_00055977-exon-scaffold_266-1491911889:119584..119643 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1491911889:119360..119404 | TCONS_00055977-exon-scaffold_266-1491911889:119360..119404 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1491911889:118988..119062 | TCONS_00055977-exon-scaffold_266-1491911889:118988..119062 | Clytia hemisphaerica | exon |
| TCONS_00055977-exon-scaffold_266-1491911889:117022..118578 | TCONS_00055977-exon-scaffold_266-1491911889:117022..118578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:117022..119643 - |
Blast
BLAST of TCONS_00055977 vs. Swiss-Prot (Human)
Match: SPRTN (SprT-like domain-containing protein Spartan OS=Homo sapiens GN=SPRTN PE=1 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 2.251e-48 Identity = 78/122 (63.93%), Postives = 94/122 (77.05%), Query Frame = 1
Query: 1 KLSAPLLKLRPRKDLVETLLHEMIHALLFVTDNNKDHDGHGPEFHKHMYRINKETGTNIS--------VDHHRQHWWRCDGPCVKRPPFFGIVRRAMNRAPSPRDRWWNDHKQKCGGAFTKI 342
+LS PLLKLRPRKDLVETLLHEMIHA LFVT+N+KD +GHGPEF KHM+RIN TG NI+ VD +R+HWWRC+GPC RPP++G V+RA NR PS D WW +H++ CGG + KI
Sbjct: 91 RLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYYGYVKRATNREPSAHDYWWAEHQKTCGGTYIKI 212
The following BLAST results are available for this feature:
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