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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056007 ID=TCONS_00056007|Name=TCONS_00056007|organism=Clytia hemisphaerica|type=transcript|length=6927bpRun BLAST on NCBI protein sequence of TCONS_00056007-protein >TCONS_00056007-protein ID=TCONS_00056007-protein|Name=TCONS_00056007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1436bp MGSRIPSSERINLSPLCMSAVPSGIQTPVEPGTGQKPLPPSELASVTPPVRun BLAST on NCBI transcript from alignment at scaffold_266:330747..347071- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056007 ID=TCONS_00056007|Name=TCONS_00056007|organism=Clytia hemisphaerica|type=transcript|length=16325bp|location=Sequence derived from alignment at scaffold_266:330747..347071- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:330747..347071- >TCONS_00056007 ID=TCONS_00056007|Name=TCONS_00056007|organism=Clytia hemisphaerica|type=CDS|length=51732bp|location=Sequence derived from alignment at scaffold_266:330747..347071- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056007 vs. Swiss-Prot (Human)
Match: APC (Adenomatous polyposis coli protein OS=Homo sapiens GN=APC PE=1 SV=2) HSP 1 Score: 437.187 bits (1123), Expect = 2.201e-123 Identity = 225/440 (51.14%), Postives = 304/440 (69.09%), Query Frame = 3
Query: 3657 TSHQNMDTRVDMMSSLLSMLGTHDHDDLARTLLAMSSNPDSCVAMRQSQCVPLLIKLLHTENKET-----GEVNWGARQRAGRALHNIVHSGSGDRRSKREVRVLHFLEIIRKHTEDIMQEET------DSFQSDIPI---QQIRPDHGPGSAVAAIMKLSFDEEHKLSICELGGLQSVCELLAVDYRVNKDTTEPSIISLRKYIGMILTNLTYKDAKNKAVLGNMHKTLLAVIGQLRLTSEEDLVQVFAVITQNISWRPDERMQQTLKSINAVRVLMMCIQQLRTETCIRSVLSAVWNLSAHNSENKEEICRTPGSLKYLTYALSYRSPTNTLKVIENAGGILRNISSHIAINPEYRRILRQEGCLQTLVSHLRFPSTRVVSNACGVLWNISARFVEDQEILWDLGAVSILKTLINSKHTSIAASSTAALRNLLAVKPG 4934
TSH + T+V+M+ SLLSMLGTHD DD++RTLLAMSS+ DSC++MRQS C+PLLI+LLH +K++ + AR RA ALHNI+HS D+R +RE+RVLH LE IR + E + + D ++ +P QI P AV +MKLSFDEEH+ ++ ELGGLQ++ ELL VD + T + I+LR+Y GM LTNLT+ D NKA L +M + A++ QL+ SE DL QV A + +N+SWR D ++TL+ + +V+ LM C +++ E+ ++SVLSA+WNLSAH +ENK +IC G+L +L L+YRS TNTL +IE+ GGILRN+SS IA N ++R+ILR+ CLQTL+ HL+ S +VSNACG LWN+SAR +DQE LWD+GAVS+LK LI+SKH IA S AALRNL+A +P
Sbjct: 305 TSH--LGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICP------AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 735 The following BLAST results are available for this feature:
BLAST of TCONS_00056007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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