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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056031 ID=TCONS_00056031|Name=TCONS_00056031|organism=Clytia hemisphaerica|type=transcript|length=1110bpRun BLAST on NCBI protein sequence of TCONS_00056031-protein >TCONS_00056031-protein ID=TCONS_00056031-protein|Name=TCONS_00056031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp LVGNRYLPPNPETNTEQLLLYILSMFHSRAFLHMRFPPRGSVACLKAINQRun BLAST on NCBI transcript from alignment at scaffold_266:553134..577364- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056031 ID=TCONS_00056031|Name=TCONS_00056031|organism=Clytia hemisphaerica|type=transcript|length=24231bp|location=Sequence derived from alignment at scaffold_266:553134..577364- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:553134..577364- >TCONS_00056031 ID=TCONS_00056031|Name=TCONS_00056031|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at scaffold_266:553134..577364- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00056031 vs. Swiss-Prot (Human)
Match: SELN (Selenoprotein N OS=Homo sapiens GN=SELENON PE=1 SV=5) HSP 1 Score: 293.123 bits (749), Expect = 6.772e-93 Identity = 160/355 (45.07%), Postives = 215/355 (60.56%), Query Frame = 1
Query: 1 LVGNRYLPPNPETNTEQLLLYILSMFHSRAFLHMRFPPRGSVACLKAINQDYYTISFRIHAEFQLNEPPLFPFWFTPASFIGEIIIKKDGTHIQHFDLKLPTRKQLNIDMEWMTSPPKTDGSHGQEVDIGFCPLMRITSTEPSIAL-----------SELSNSEEKVIVWDEI-----LDDQAVFDIMEQDFYPFKKIPYLDFNKTFERAVKEKKLIHHITLWGALDDQSC*GSGRTLREGPLESSPVTEILKEKFISSWSLVADLKDLTRLSGDPKIAKYAQIVLDNYKFPVQSMVISPDDGSVICGVNANELLDQTKGESWEAMTN-------FQDPLTYAYVKFLKDGMVKA 996
L NR+ PP P+ E ++ +LSMFH R F+ RF P+G+VACL AI+ YYT+ FRIHAEFQL+EPP FPFWF+PA F G II+ KD TH++ F L +P + LN+DMEW+ S EVDIG+ P M + +T PS+ S L + E V++EI L + +E YPFKK+ YL F + F+RA E KL+H I LWGALDDQSC GSGRTLRE LESSP+ +L E FIS+WSLV +L++L + K A + L+ Y FPV+ M+ P +G+V+ +NAN LD T + E +N F+DP T Y++FLK+G+ +
Sbjct: 235 LSNNRFYPPPPK-GKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYG---ASESSNMEVDIGYIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRTLRETVLESSPILTLLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLP-NGTVVHHINANYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRG 584 The following BLAST results are available for this feature:
BLAST of TCONS_00056031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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