TCONS_00056229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056229
Unique NameTCONS_00056229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056229 ID=TCONS_00056229|Name=TCONS_00056229|organism=Clytia hemisphaerica|type=transcript|length=893bp
CTTTGCTGTACGTTGTCAATCTCCTCCAATCTTTTGGTCACAGCTTTGAT
TCCCTCCGAACTGAGATTTTGATGAAGTGACAACTGTTGAGCGAGGTTGC
CAATTTTTTGAGTTGTTGAAATTTGGAAATCTGTAACATCTTGAGATAAT
GATGCTTGTTGATTCTCAAGGGCTGCCTGCTTGTTTGCTAGGGTCGTATG
TTTAGTATCTTGGGCGGTCTGTTTGGTAACCAGGGCCGTTTGTTGATCAG
CTTGGGCCGTCTGTTGTTTAGAAAGTGTTTCTTGCTTTCTCTCTAGATAC
AAATACATAGATTTGACAACATTCTCGTACTTTAGGTCCAATGACATTGT
TTTCAGCTGCGTTGTGTCGTAAGTAAAGCCAAGATTGTTGATGATTTGCT
CTCCTTCCATCCATTTCTGATTAAATTctgtttgattgattttatcTGGA
TCTGTGTGGTGAATGTAATTTCGCCATTCTCTTGCACGAATTACAAATGC
ACCGATACTTAAGTCAGTTGCAGGTGGATTTTTGTTTTTCCATCCTTTGA
GAGGAGCAGGAAGATTGGTAAAATTGATAATCAAAATACAGATGAGCGTA
ACATCAAATTGAGAAGAGTCGGTTGCGTTTCTAGTAGGAGGTAGTAATGC
ATCCACTTGATCTTGTTTTAAAACATTTCCTTTCTTCAACTTCTTTATTT
TCGTTTGATGATTGGCATCTGTCGAGAGTTTTTGATATAGTTGTTGAGGG
TCTTGAGGTAGACCATTGTATGAAGGGTCATTAGAGAGGTTATGGAGTAC
ATGAAGTAGAAATGACTTTAGAGGTCCATGAAGGAAAGTGGCAAGTCGTA
ACCAGAATTGGATTGCAGTGATTAGAGCAGCGATCGTCAATGT
Run BLAST on NCBI

protein sequence of TCONS_00056229-protein

>TCONS_00056229-protein ID=TCONS_00056229-protein|Name=TCONS_00056229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
TLTIAALITAIQFWLRLATFLHGPLKSFLLHVLHNLSNDPSYNGLPQDPQ
QLYQKLSTDANHQTKIKKLKKGNVLKQDQVDALLPPTRNATDSSQFDVTL
ICILIINFTNLPAPLKGWKNKNPPATDLSIGAFVIRAREWRNYIHHTDPD
KINQTEFNQKWMEGEQIINNLGFTYDTTQLKTMSLDLKYENVVKSMYLYL
ERKQETLSKQQTAQADQQTALVTKQTAQDTKHTTLANKQAALENQQASLS
QDVTDFQISTTQKIGNLAQQLSLHQNLSSEGIKAVTKRLEEIDNVQQ
Run BLAST on NCBI

transcript from alignment at scaffold_269:149601..150493

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056229 ID=TCONS_00056229|Name=TCONS_00056229|organism=Clytia hemisphaerica|type=transcript|length=893bp|location=Sequence derived from alignment at scaffold_269:149601..150493 (Clytia hemisphaerica)
ACATTGACGATCGCTGCTCTAATCACTGCAATCCAATTCTGGTTACGACT TGCCACTTTCCTTCATGGACCTCTAAAGTCATTTCTACTTCATGTACTCC ATAACCTCTCTAATGACCCTTCATACAATGGTCTACCTCAAGACCCTCAA CAACTATATCAAAAACTCTCGACAGATGCCAATCATCAAACGAAAATAAA GAAGTTGAAGAAAGGAAATGTTTTAAAACAAGATCAAGTGGATGCATTAC TACCTCCTACTAGAAACGCAACCGACTCTTCTCAATTTGATGTTACGCTC ATCTGTATTTTGATTATCAATTTTACCAATCTTCCTGCTCCTCTCAAAGG ATGGAAAAACAAAAATCCACCTGCAACTGACTTAAGTATCGGTGCATTTG TAATTCGTGCAAGAGAATGGCGAAATTACATTCACCACACAGATCCAgat aaaatcaatcaaacagAATTTAATCAGAAATGGATGGAAGGAGAGCAAAT CATCAACAATCTTGGCTTTACTTACGACACAACGCAGCTGAAAACAATGT CATTGGACCTAAAGTACGAGAATGTTGTCAAATCTATGTATTTGTATCTA GAGAGAAAGCAAGAAACACTTTCTAAACAACAGACGGCCCAAGCTGATCA ACAAACGGCCCTGGTTACCAAACAGACCGCCCAAGATACTAAACATACGA CCCTAGCAAACAAGCAGGCAGCCCTTGAGAATCAACAAGCATCATTATCT CAAGATGTTACAGATTTCCAAATTTCAACAACTCAAAAAATTGGCAACCT CGCTCAACAGTTGTCACTTCATCAAAATCTCAGTTCGGAGGGAATCAAAG CTGTGACCAAAAGATTGGAGGAGATTGACAACGTACAGCAAAG

Coding sequence (CDS) from alignment at scaffold_269:149601..150493

>TCONS_00056229 ID=TCONS_00056229|Name=TCONS_00056229|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at scaffold_269:149601..150493 (Clytia hemisphaerica)
ACATTGACGATCGCTGCTCTAATCACTGCAATCCAATTCTGGTTACGACT
TGCCACTTTCCTTCATGGACCTCTAAAGTCATTTCTACTTCATGTACTCC
ATAACCTCTCTAATGACCCTTCATACAATGGTCTACCTCAAGACCCTCAA
CAACTATATCAAAAACTCTCGACAGATGCCAATCATCAAACGAAAATAAA
GAAGTTGAAGAAAGGAAATGTTTTAAAACAAGATCAAGTGGATGCATTAC
TACCTCCTACTAGAAACGCAACCGACTCTTCTCAATTTGATGTTACGCTC
ATCTGTATTTTGATTATCAATTTTACCAATCTTCCTGCTCCTCTCAAAGG
ATGGAAAAACAAAAATCCACCTGCAACTGACTTAAGTATCGGTGCATTTG
TAATTCGTGCAAGAGAATGGCGAAATTACATTCACCACACAGATCCAgat
aaaatcaatcaaacagAATTTAATCAGAAATGGATGGAAGGAGAGCAAAT
CATCAACAATCTTGGCTTTACTTACGACACAACGCAGCTGAAAACAATGT
CATTGGACCTAAAGTACGAGAATGTTGTCAAATCTATGTATTTGTATCTA
GAGAGAAAGCAAGAAACACTTTCTAAACAACAGACGGCCCAAGCTGATCA
ACAAACGGCCCTGGTTACCAAACAGACCGCCCAAGATACTAAACATACGA
CCCTAGCAAACAAGCAGGCAGCCCTTGAGAATCAACAAGCATCATTATCT
CAAGATGTTACAGATTTCCAAATTTCAACAACTCAAAAAATTGGCAACCT
CGCTCAACAGTTGTCACTTCATCAAAATCTCAGTTCGGAGGGAATCAAAG
CTGTGACCAAAAGATTGGAGGAGATTGACAACGTACAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035410XLOC_035410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056229-exon-scaffold_269-1491911889:149601..150493TCONS_00056229-exon-scaffold_269-1491911889:149601..150493Clytia hemisphaericaexon
TCONS_00056229-exon-scaffold_269-1510915933:149601..150493TCONS_00056229-exon-scaffold_269-1510915933:149601..150493Clytia hemisphaericaexon
TCONS_00056229-exon-scaffold_269-1575043694:149601..150493TCONS_00056229-exon-scaffold_269-1575043694:149601..150493Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056229-proteinTCONS_00056229-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:149601..150493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (4.17601 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.432188 0.386911 0.855695 2.3545 0.486904 1.11705 1.3037 0.602198 2.79417 2.72873 1.9995 2.46584 0.760011 1.29931 3.7628 4.03755 2.19549 1.01031 0.724845 1.43003 2.27194 2.59625 4.17601 2.22789 2.75789 1.81737
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
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