TCONS_00056296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056296
Unique NameTCONS_00056296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2034

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056296 ID=TCONS_00056296|Name=TCONS_00056296|organism=Clytia hemisphaerica|type=transcript|length=2034bp
AATAACAAAGTCGCGGCTATTGGAAACTTCTTATTATGTTTTAAAAGTGT
TTATATTTTAAACAAGGCAGGTTATTCGATAAATTACAATTTACATTAGT
GCTAGATATAGAAAATGTTTTCGAGTTTTCTCCTAATTGGATTTCGTCCA
CANAATTTACATTAGTGCTAGATATAGAAAATGTTTTCGAGTTTTCTCCA
AATTGGATTTCGTCCACAAGATTCCTGGCAATCTCTTGATATTCAGGTGA
ACAGTTTAGTAAAGAAATTAAGtctttcaatttcgatttgGATTTCACTT
TTAGGTTATGAATCCATGACATTTTTTGTCTCGTCATACTTATATGTTTT
TTCTtcaacattttgttttgatttccaAGTTCTTTTTCCTTGTCAAAGAG
TTCATTGTGTGATACCTTCTTTTTTCGGGCATATTTTTGATTACTTTTTT
GTCTTCGTTCCTTCTTGTCGAGGTCTTTTTGGGACAGTTTTATTCTCTCC
GACTCTGATGTTCCAGTAGGATGAACTATGGTTTTTCCCTTTGAAGCGAA
GTGACTTTGTGTGTCTCCAATGTGGTGCAAAGGTTCATATAGGTTTTGAC
ATCCGCCTTGGTTTGGCAACTGCATATAAATGTGATCTTCGTCAACACAA
CCAGTTCCGTTGAAACGATCTGAACTTTGCATTAACATATCAGTAGTTTT
CAGCAGCATGTTTGAATGATTGGGGAAATTAGTATCTTTCTGTAAACTCG
TTACGTAGTCAgatttttcactttcaaaaaGTTCTCCTTTGAGTACTGGT
AAAGTATCTTGGTAAGAAACCTCTGGTGGTTCCTCGTAAACTATCGACTC
TTTGTTTAAGCATGTTATCGAAGAAGCCAATGAAATATTATCCAACGAAT
TGTCGGGAACAGAATTTTGAAACACATTTTGACGAGGCttaatatcaaaa
taatttttattcggAACTGTTTGCTGTCCCCTCTTAACATTGTTTATGAG
TAAGTTCGTGTTTATTGTCTGTGGATTGTAAATTGTTTTATCACCAAAGT
CTACATGCAGATATGTTTCGGTTCCTTCGTGAAATCCCTCTTGGCTCACT
TGTGATGCAGGAAGTGTTTTCTCGCAGATATTTGCATAAAACGGTGTTGG
GTCTGAAGAAATCGGAAAGGCACTTTGGCAATCGATTTCATCCTCGTGAA
GGCTTTTGACATCTCTTGGTGATGAAATGTTGGAGGAGCTGTAATAAGCA
CTATCGATATCACTTCTATTACAATCGAATTGTGGCTGCGAAGGATAATC
ATAGNATGAAATGTTGGAGGAGCTGTAATAAGCACTATCGATATCACTTC
TATTACAATCGAATTGTGGCTGAGAAGGATAATCATAGACGTTTAAAGTT
GATGAAGACGAAGAAATAGTTGAAAGTCTATCTCTTTCAAATTTATTGGA
ATTCAACGACCAGGACTTGTAAAAATGTGATTGCTTCAACTCTTTGTGAC
CGGCTTGTAATTGTTCACCGTGATTATTCCATTCGGTataattactggaa
gaaaaactGTGACTGTGGCGACCTTCATTTTCATCCATCTTTTTTAACAA
GCACTCAGTATCTCTACCAGAAGGTAACACGACGTCAAGTTCATTATAAT
CATGTAAGTGATCTTGAAAACCTGGCGGGAAACCTGGTAACTGTAATGGC
TGTCTTTTCTCCATGTCGATTGTCGGTCTTGGTCGTAATGTATGCTGTTT
atggaaaatcaaaaaagtttcaacgtCCGAAATAATCTTGTCCAGTTTTT
CTTTCAACGGTAAATTCTTTTCCTCTAATACCAACAAAGGATCGATGCTC
AGTGCATCCAAtttagaaaacaatttattaataaattttacttttttact
aCTCCTTGGCTTTCTTGAGAAACATGGCATTGCATTTCGAAAAGTCGTTG
AGGTTGATCTGCACCCTTCCAAACATAATGATCGACTATTGGTCTTGCAA
TCATTTCTACCAACTTTAAGCAATGAATCATATT
Run BLAST on NCBI

protein sequence of TCONS_00056296-protein

>TCONS_00056296-protein ID=TCONS_00056296-protein|Name=TCONS_00056296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=663bp
YDSLLKVGRNDCKTNSRSLCLEGCRSTSTTFRNAMPCFSRKPRSSKKVKF
INKLFSKLDALSIDPLLVLEEKNLPLKEKLDKIISDVETFLIFHKQHTLR
PRPTIDMEKRQPLQLPGFPPGFQDHLHDYNELDVVLPSGRDTECLLKKMD
ENEGRHSHSFSSSNYTEWNNHGEQLQAGHKELKQSHFYKSWSLNSNKFER
DRLSTISSSSSTLNVYDYPSQPQFDCNRSDIDSAYYSSSNISXYDYPSQP
QFDCNRSDIDSAYYSSSNISSPRDVKSLHEDEIDCQSAFPISSDPTPFYA
NICEKTLPASQVSQEGFHEGTETYLHVDFGDKTIYNPQTINTNLLINNVK
RGQQTVPNKNYFDIKPRQNVFQNSVPDNSLDNISLASSITCLNKESIVYE
EPPEVSYQDTLPVLKGELFESEKSDYVTSLQKDTNFPNHSNMLLKTTDML
MQSSDRFNGTGCVDEDHIYMQLPNQGGCQNLYEPLHHIGDTQSHFASKGK
TIVHPTGTSESERIKLSQKDLDKKERRQKSNQKYARKKKVSHNELFDKEK
ELGNQNKMLKKKHISMTRQKMSWIHNLKVKSKSKLKDLISLLNCSPEYQE
IARNLVDEIQFGENSKTFSISSTNVNXVDEIQLGENSKTFSISSTNVNCN
LSNNLPCLKYKHF
Run BLAST on NCBI

transcript from alignment at scaffold_271:28201..30234

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056296 ID=TCONS_00056296|Name=TCONS_00056296|organism=Clytia hemisphaerica|type=transcript|length=2034bp|location=Sequence derived from alignment at scaffold_271:28201..30234 (Clytia hemisphaerica)
AATATGATTCATTGCTTAAAGTTGGTAGAAATGATTGCAAGACCAATAGT CGATCATTATGTTTGGAAGGGTGCAGATCAACCTCAACGACTTTTCGAAA TGCAATGCCATGTTTCTCAAGAAAGCCAAGGAGtagtaaaaaagtaaaat ttattaataaattgttttctaaaTTGGATGCACTGAGCATCGATCCTTTG TTGGTATTAGAGGAAAAGAATTTACCGTTGAAAGAAAAACTGGACAAGAT TATTTCGGacgttgaaacttttttgattttccatAAACAGCATACATTAC GACCAAGACCGACAATCGACATGGAGAAAAGACAGCCATTACAGTTACCA GGTTTCCCGCCAGGTTTTCAAGATCACTTACATGATTATAATGAACTTGA CGTCGTGTTACCTTCTGGTAGAGATACTGAGTGCTTGTTAAAAAAGATGG ATGAAAATGAAGGTCGCCACAGTCACagtttttcttccagtaattatACC GAATGGAATAATCACGGTGAACAATTACAAGCCGGTCACAAAGAGTTGAA GCAATCACATTTTTACAAGTCCTGGTCGTTGAATTCCAATAAATTTGAAA GAGATAGACTTTCAACTATTTCTTCGTCTTCATCAACTTTAAACGTCTAT GATTATCCTTCTCAGCCACAATTCGATTGTAATAGAAGTGATATCGATAG TGCTTATTACAGCTCCTCCAACATTTCATNCTATGATTATCCTTCGCAGC CACAATTCGATTGTAATAGAAGTGATATCGATAGTGCTTATTACAGCTCC TCCAACATTTCATCACCAAGAGATGTCAAAAGCCTTCACGAGGATGAAAT CGATTGCCAAAGTGCCTTTCCGATTTCTTCAGACCCAACACCGTTTTATG CAAATATCTGCGAGAAAACACTTCCTGCATCACAAGTGAGCCAAGAGGGA TTTCACGAAGGAACCGAAACATATCTGCATGTAGACTTTGGTGATAAAAC AATTTACAATCCACAGACAATAAACACGAACTTACTCATAAACAATGTTA AGAGGGGACAGCAAACAGTTccgaataaaaattattttgatattaaGCCT CGTCAAAATGTGTTTCAAAATTCTGTTCCCGACAATTCGTTGGATAATAT TTCATTGGCTTCTTCGATAACATGCTTAAACAAAGAGTCGATAGTTTACG AGGAACCACCAGAGGTTTCTTACCAAGATACTTTACCAGTACTCAAAGGA GAACtttttgaaagtgaaaaatcTGACTACGTAACGAGTTTACAGAAAGA TACTAATTTCCCCAATCATTCAAACATGCTGCTGAAAACTACTGATATGT TAATGCAAAGTTCAGATCGTTTCAACGGAACTGGTTGTGTTGACGAAGAT CACATTTATATGCAGTTGCCAAACCAAGGCGGATGTCAAAACCTATATGA ACCTTTGCACCACATTGGAGACACACAAAGTCACTTCGCTTCAAAGGGAA AAACCATAGTTCATCCTACTGGAACATCAGAGTCGGAGAGAATAAAACTG TCCCAAAAAGACCTCGACAAGAAGGAACGAAGACAAAAAAGTAATCAAAA ATATGCCCGAAAAAAGAAGGTATCACACAATGAACTCTTTGACAAGGAAA AAGAACTtggaaatcaaaacaaaatgttgaAGAAAAAACATATAAGTATG ACGAGACAAAAAATGTCATGGATTCATAACCTAAAAGTGAAATCcaaatc gaaattgaaagaCTTAATTTCTTTACTAAACTGTTCACCTGAATATCAAG AGATTGCCAGGAATCTTGTGGACGAAATCCAATTTGGAGAAAACTCGAAA ACATTTTCTATATCTAGCACTAATGTAAATTNTGTGGACGAAATCCAATT AGGAGAAAACTCGAAAACATTTTCTATATCTAGCACTAATGTAAATTGTA ATTTATCGAATAACCTGCCTTGTTTAAAATATAAACACTTTTAAAACATA ATAAGAAGTTTCCAATAGCCGCGACTTTGTTATT

Coding sequence (CDS) from alignment at scaffold_271:28201..30234

>TCONS_00056296 ID=TCONS_00056296|Name=TCONS_00056296|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_271:28201..30234 (Clytia hemisphaerica)
TATGATTCATTGCTTAAAGTTGGTAGAAATGATTGCAAGACCAATAGTCG
ATCATTATGTTTGGAAGGGTGCAGATCAACCTCAACGACTTTTCGAAATG
CAATGCCATGTTTCTCAAGAAAGCCAAGGAGtagtaaaaaagtaaaattt
attaataaattgttttctaaaTTGGATGCACTGAGCATCGATCCTTTGTT
GGTATTAGAGGAAAAGAATTTACCGTTGAAAGAAAAACTGGACAAGATTA
TTTCGGacgttgaaacttttttgattttccatAAACAGCATACATTACGA
CCAAGACCGACAATCGACATGGAGAAAAGACAGCCATTACAGTTACCAGG
TTTCCCGCCAGGTTTTCAAGATCACTTACATGATTATAATGAACTTGACG
TCGTGTTACCTTCTGGTAGAGATACTGAGTGCTTGTTAAAAAAGATGGAT
GAAAATGAAGGTCGCCACAGTCACagtttttcttccagtaattatACCGA
ATGGAATAATCACGGTGAACAATTACAAGCCGGTCACAAAGAGTTGAAGC
AATCACATTTTTACAAGTCCTGGTCGTTGAATTCCAATAAATTTGAAAGA
GATAGACTTTCAACTATTTCTTCGTCTTCATCAACTTTAAACGTCTATGA
TTATCCTTCTCAGCCACAATTCGATTGTAATAGAAGTGATATCGATAGTG
CTTATTACAGCTCCTCCAACATTTCATNCTATGATTATCCTTCGCAGCCA
CAATTCGATTGTAATAGAAGTGATATCGATAGTGCTTATTACAGCTCCTC
CAACATTTCATCACCAAGAGATGTCAAAAGCCTTCACGAGGATGAAATCG
ATTGCCAAAGTGCCTTTCCGATTTCTTCAGACCCAACACCGTTTTATGCA
AATATCTGCGAGAAAACACTTCCTGCATCACAAGTGAGCCAAGAGGGATT
TCACGAAGGAACCGAAACATATCTGCATGTAGACTTTGGTGATAAAACAA
TTTACAATCCACAGACAATAAACACGAACTTACTCATAAACAATGTTAAG
AGGGGACAGCAAACAGTTccgaataaaaattattttgatattaaGCCTCG
TCAAAATGTGTTTCAAAATTCTGTTCCCGACAATTCGTTGGATAATATTT
CATTGGCTTCTTCGATAACATGCTTAAACAAAGAGTCGATAGTTTACGAG
GAACCACCAGAGGTTTCTTACCAAGATACTTTACCAGTACTCAAAGGAGA
ACtttttgaaagtgaaaaatcTGACTACGTAACGAGTTTACAGAAAGATA
CTAATTTCCCCAATCATTCAAACATGCTGCTGAAAACTACTGATATGTTA
ATGCAAAGTTCAGATCGTTTCAACGGAACTGGTTGTGTTGACGAAGATCA
CATTTATATGCAGTTGCCAAACCAAGGCGGATGTCAAAACCTATATGAAC
CTTTGCACCACATTGGAGACACACAAAGTCACTTCGCTTCAAAGGGAAAA
ACCATAGTTCATCCTACTGGAACATCAGAGTCGGAGAGAATAAAACTGTC
CCAAAAAGACCTCGACAAGAAGGAACGAAGACAAAAAAGTAATCAAAAAT
ATGCCCGAAAAAAGAAGGTATCACACAATGAACTCTTTGACAAGGAAAAA
GAACTtggaaatcaaaacaaaatgttgaAGAAAAAACATATAAGTATGAC
GAGACAAAAAATGTCATGGATTCATAACCTAAAAGTGAAATCcaaatcga
aattgaaagaCTTAATTTCTTTACTAAACTGTTCACCTGAATATCAAGAG
ATTGCCAGGAATCTTGTGGACGAAATCCAATTTGGAGAAAACTCGAAAAC
ATTTTCTATATCTAGCACTAATGTAAATTNTGTGGACGAAATCCAATTAG
GAGAAAACTCGAAAACATTTTCTATATCTAGCACTAATGTAAATTGTAAT
TTATCGAATAACCTGCCTTGTTTAAAATATAAACACTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035464XLOC_035464Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056296-proteinTCONS_00056296-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056296-exon-scaffold_271-1491911889:28201..30234TCONS_00056296-exon-scaffold_271-1491911889:28201..30234Clytia hemisphaericaexon
TCONS_00056296-exon-scaffold_271-1510915933:28201..30234TCONS_00056296-exon-scaffold_271-1510915933:28201..30234Clytia hemisphaericaexon
TCONS_00056296-exon-scaffold_271-1575043694:28201..30234TCONS_00056296-exon-scaffold_271-1575043694:28201..30234Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_271supercontigscaffold_271:28201..30234 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (5.66126 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0568708 0 0.0430683 0.36702 0.227876 1.12469 2.17603 0.638882 5.66126 1.26049 1.32058 2.48234 2.26912 0.93828 2.93783 0.496177 0.448734 1.21924 3.0058 0.0751822 0.247531 0.33434 0.2837 0.688767 1.11765 0.932957 1.10947 0.517841 0.197849
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Sequence
Match NameE-valueIdentityDescription
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