Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056296 ID=TCONS_00056296|Name=TCONS_00056296|organism=Clytia hemisphaerica|type=transcript|length=2034bp AATAACAAAGTCGCGGCTATTGGAAACTTCTTATTATGTTTTAAAAGTGT TTATATTTTAAACAAGGCAGGTTATTCGATAAATTACAATTTACATTAGT GCTAGATATAGAAAATGTTTTCGAGTTTTCTCCTAATTGGATTTCGTCCA CANAATTTACATTAGTGCTAGATATAGAAAATGTTTTCGAGTTTTCTCCA AATTGGATTTCGTCCACAAGATTCCTGGCAATCTCTTGATATTCAGGTGA ACAGTTTAGTAAAGAAATTAAGtctttcaatttcgatttgGATTTCACTT TTAGGTTATGAATCCATGACATTTTTTGTCTCGTCATACTTATATGTTTT TTCTtcaacattttgttttgatttccaAGTTCTTTTTCCTTGTCAAAGAG TTCATTGTGTGATACCTTCTTTTTTCGGGCATATTTTTGATTACTTTTTT GTCTTCGTTCCTTCTTGTCGAGGTCTTTTTGGGACAGTTTTATTCTCTCC GACTCTGATGTTCCAGTAGGATGAACTATGGTTTTTCCCTTTGAAGCGAA GTGACTTTGTGTGTCTCCAATGTGGTGCAAAGGTTCATATAGGTTTTGAC ATCCGCCTTGGTTTGGCAACTGCATATAAATGTGATCTTCGTCAACACAA CCAGTTCCGTTGAAACGATCTGAACTTTGCATTAACATATCAGTAGTTTT CAGCAGCATGTTTGAATGATTGGGGAAATTAGTATCTTTCTGTAAACTCG TTACGTAGTCAgatttttcactttcaaaaaGTTCTCCTTTGAGTACTGGT AAAGTATCTTGGTAAGAAACCTCTGGTGGTTCCTCGTAAACTATCGACTC TTTGTTTAAGCATGTTATCGAAGAAGCCAATGAAATATTATCCAACGAAT TGTCGGGAACAGAATTTTGAAACACATTTTGACGAGGCttaatatcaaaa taatttttattcggAACTGTTTGCTGTCCCCTCTTAACATTGTTTATGAG TAAGTTCGTGTTTATTGTCTGTGGATTGTAAATTGTTTTATCACCAAAGT CTACATGCAGATATGTTTCGGTTCCTTCGTGAAATCCCTCTTGGCTCACT TGTGATGCAGGAAGTGTTTTCTCGCAGATATTTGCATAAAACGGTGTTGG GTCTGAAGAAATCGGAAAGGCACTTTGGCAATCGATTTCATCCTCGTGAA GGCTTTTGACATCTCTTGGTGATGAAATGTTGGAGGAGCTGTAATAAGCA CTATCGATATCACTTCTATTACAATCGAATTGTGGCTGCGAAGGATAATC ATAGNATGAAATGTTGGAGGAGCTGTAATAAGCACTATCGATATCACTTC TATTACAATCGAATTGTGGCTGAGAAGGATAATCATAGACGTTTAAAGTT GATGAAGACGAAGAAATAGTTGAAAGTCTATCTCTTTCAAATTTATTGGA ATTCAACGACCAGGACTTGTAAAAATGTGATTGCTTCAACTCTTTGTGAC CGGCTTGTAATTGTTCACCGTGATTATTCCATTCGGTataattactggaa gaaaaactGTGACTGTGGCGACCTTCATTTTCATCCATCTTTTTTAACAA GCACTCAGTATCTCTACCAGAAGGTAACACGACGTCAAGTTCATTATAAT CATGTAAGTGATCTTGAAAACCTGGCGGGAAACCTGGTAACTGTAATGGC TGTCTTTTCTCCATGTCGATTGTCGGTCTTGGTCGTAATGTATGCTGTTT atggaaaatcaaaaaagtttcaacgtCCGAAATAATCTTGTCCAGTTTTT CTTTCAACGGTAAATTCTTTTCCTCTAATACCAACAAAGGATCGATGCTC AGTGCATCCAAtttagaaaacaatttattaataaattttacttttttact aCTCCTTGGCTTTCTTGAGAAACATGGCATTGCATTTCGAAAAGTCGTTG AGGTTGATCTGCACCCTTCCAAACATAATGATCGACTATTGGTCTTGCAA TCATTTCTACCAACTTTAAGCAATGAATCATATT Run BLAST on NCBI protein sequence of TCONS_00056296-protein >TCONS_00056296-protein ID=TCONS_00056296-protein|Name=TCONS_00056296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=663bp
YDSLLKVGRNDCKTNSRSLCLEGCRSTSTTFRNAMPCFSRKPRSSKKVKF INKLFSKLDALSIDPLLVLEEKNLPLKEKLDKIISDVETFLIFHKQHTLR PRPTIDMEKRQPLQLPGFPPGFQDHLHDYNELDVVLPSGRDTECLLKKMD ENEGRHSHSFSSSNYTEWNNHGEQLQAGHKELKQSHFYKSWSLNSNKFER DRLSTISSSSSTLNVYDYPSQPQFDCNRSDIDSAYYSSSNISXYDYPSQP QFDCNRSDIDSAYYSSSNISSPRDVKSLHEDEIDCQSAFPISSDPTPFYA NICEKTLPASQVSQEGFHEGTETYLHVDFGDKTIYNPQTINTNLLINNVK RGQQTVPNKNYFDIKPRQNVFQNSVPDNSLDNISLASSITCLNKESIVYE EPPEVSYQDTLPVLKGELFESEKSDYVTSLQKDTNFPNHSNMLLKTTDML MQSSDRFNGTGCVDEDHIYMQLPNQGGCQNLYEPLHHIGDTQSHFASKGK TIVHPTGTSESERIKLSQKDLDKKERRQKSNQKYARKKKVSHNELFDKEK ELGNQNKMLKKKHISMTRQKMSWIHNLKVKSKSKLKDLISLLNCSPEYQE IARNLVDEIQFGENSKTFSISSTNVNXVDEIQLGENSKTFSISSTNVNCN LSNNLPCLKYKHF Run BLAST on NCBI transcript from alignment at scaffold_271:28201..30234 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056296 ID=TCONS_00056296|Name=TCONS_00056296|organism=Clytia hemisphaerica|type=transcript|length=2034bp|location=Sequence derived from alignment at scaffold_271:28201..30234 (Clytia hemisphaerica) AATATGATTCATTGCTTAAAGTTGGTAGAAATGATTGCAAGACCAATAGT
CGATCATTATGTTTGGAAGGGTGCAGATCAACCTCAACGACTTTTCGAAA
TGCAATGCCATGTTTCTCAAGAAAGCCAAGGAGtagtaaaaaagtaaaat
ttattaataaattgttttctaaaTTGGATGCACTGAGCATCGATCCTTTG
TTGGTATTAGAGGAAAAGAATTTACCGTTGAAAGAAAAACTGGACAAGAT
TATTTCGGacgttgaaacttttttgattttccatAAACAGCATACATTAC
GACCAAGACCGACAATCGACATGGAGAAAAGACAGCCATTACAGTTACCA
GGTTTCCCGCCAGGTTTTCAAGATCACTTACATGATTATAATGAACTTGA
CGTCGTGTTACCTTCTGGTAGAGATACTGAGTGCTTGTTAAAAAAGATGG
ATGAAAATGAAGGTCGCCACAGTCACagtttttcttccagtaattatACC
GAATGGAATAATCACGGTGAACAATTACAAGCCGGTCACAAAGAGTTGAA
GCAATCACATTTTTACAAGTCCTGGTCGTTGAATTCCAATAAATTTGAAA
GAGATAGACTTTCAACTATTTCTTCGTCTTCATCAACTTTAAACGTCTAT
GATTATCCTTCTCAGCCACAATTCGATTGTAATAGAAGTGATATCGATAG
TGCTTATTACAGCTCCTCCAACATTTCATNCTATGATTATCCTTCGCAGC
CACAATTCGATTGTAATAGAAGTGATATCGATAGTGCTTATTACAGCTCC
TCCAACATTTCATCACCAAGAGATGTCAAAAGCCTTCACGAGGATGAAAT
CGATTGCCAAAGTGCCTTTCCGATTTCTTCAGACCCAACACCGTTTTATG
CAAATATCTGCGAGAAAACACTTCCTGCATCACAAGTGAGCCAAGAGGGA
TTTCACGAAGGAACCGAAACATATCTGCATGTAGACTTTGGTGATAAAAC
AATTTACAATCCACAGACAATAAACACGAACTTACTCATAAACAATGTTA
AGAGGGGACAGCAAACAGTTccgaataaaaattattttgatattaaGCCT
CGTCAAAATGTGTTTCAAAATTCTGTTCCCGACAATTCGTTGGATAATAT
TTCATTGGCTTCTTCGATAACATGCTTAAACAAAGAGTCGATAGTTTACG
AGGAACCACCAGAGGTTTCTTACCAAGATACTTTACCAGTACTCAAAGGA
GAACtttttgaaagtgaaaaatcTGACTACGTAACGAGTTTACAGAAAGA
TACTAATTTCCCCAATCATTCAAACATGCTGCTGAAAACTACTGATATGT
TAATGCAAAGTTCAGATCGTTTCAACGGAACTGGTTGTGTTGACGAAGAT
CACATTTATATGCAGTTGCCAAACCAAGGCGGATGTCAAAACCTATATGA
ACCTTTGCACCACATTGGAGACACACAAAGTCACTTCGCTTCAAAGGGAA
AAACCATAGTTCATCCTACTGGAACATCAGAGTCGGAGAGAATAAAACTG
TCCCAAAAAGACCTCGACAAGAAGGAACGAAGACAAAAAAGTAATCAAAA
ATATGCCCGAAAAAAGAAGGTATCACACAATGAACTCTTTGACAAGGAAA
AAGAACTtggaaatcaaaacaaaatgttgaAGAAAAAACATATAAGTATG
ACGAGACAAAAAATGTCATGGATTCATAACCTAAAAGTGAAATCcaaatc
gaaattgaaagaCTTAATTTCTTTACTAAACTGTTCACCTGAATATCAAG
AGATTGCCAGGAATCTTGTGGACGAAATCCAATTTGGAGAAAACTCGAAA
ACATTTTCTATATCTAGCACTAATGTAAATTNTGTGGACGAAATCCAATT
AGGAGAAAACTCGAAAACATTTTCTATATCTAGCACTAATGTAAATTGTA
ATTTATCGAATAACCTGCCTTGTTTAAAATATAAACACTTTTAAAACATA
ATAAGAAGTTTCCAATAGCCGCGACTTTGTTATT Coding sequence (CDS) from alignment at scaffold_271:28201..30234 >TCONS_00056296 ID=TCONS_00056296|Name=TCONS_00056296|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_271:28201..30234 (Clytia hemisphaerica) TATGATTCATTGCTTAAAGTTGGTAGAAATGATTGCAAGACCAATAGTCG ATCATTATGTTTGGAAGGGTGCAGATCAACCTCAACGACTTTTCGAAATG CAATGCCATGTTTCTCAAGAAAGCCAAGGAGtagtaaaaaagtaaaattt attaataaattgttttctaaaTTGGATGCACTGAGCATCGATCCTTTGTT GGTATTAGAGGAAAAGAATTTACCGTTGAAAGAAAAACTGGACAAGATTA TTTCGGacgttgaaacttttttgattttccatAAACAGCATACATTACGA CCAAGACCGACAATCGACATGGAGAAAAGACAGCCATTACAGTTACCAGG TTTCCCGCCAGGTTTTCAAGATCACTTACATGATTATAATGAACTTGACG TCGTGTTACCTTCTGGTAGAGATACTGAGTGCTTGTTAAAAAAGATGGAT GAAAATGAAGGTCGCCACAGTCACagtttttcttccagtaattatACCGA ATGGAATAATCACGGTGAACAATTACAAGCCGGTCACAAAGAGTTGAAGC AATCACATTTTTACAAGTCCTGGTCGTTGAATTCCAATAAATTTGAAAGA GATAGACTTTCAACTATTTCTTCGTCTTCATCAACTTTAAACGTCTATGA TTATCCTTCTCAGCCACAATTCGATTGTAATAGAAGTGATATCGATAGTG CTTATTACAGCTCCTCCAACATTTCATNCTATGATTATCCTTCGCAGCCA CAATTCGATTGTAATAGAAGTGATATCGATAGTGCTTATTACAGCTCCTC CAACATTTCATCACCAAGAGATGTCAAAAGCCTTCACGAGGATGAAATCG ATTGCCAAAGTGCCTTTCCGATTTCTTCAGACCCAACACCGTTTTATGCA AATATCTGCGAGAAAACACTTCCTGCATCACAAGTGAGCCAAGAGGGATT TCACGAAGGAACCGAAACATATCTGCATGTAGACTTTGGTGATAAAACAA TTTACAATCCACAGACAATAAACACGAACTTACTCATAAACAATGTTAAG AGGGGACAGCAAACAGTTccgaataaaaattattttgatattaaGCCTCG TCAAAATGTGTTTCAAAATTCTGTTCCCGACAATTCGTTGGATAATATTT CATTGGCTTCTTCGATAACATGCTTAAACAAAGAGTCGATAGTTTACGAG GAACCACCAGAGGTTTCTTACCAAGATACTTTACCAGTACTCAAAGGAGA ACtttttgaaagtgaaaaatcTGACTACGTAACGAGTTTACAGAAAGATA CTAATTTCCCCAATCATTCAAACATGCTGCTGAAAACTACTGATATGTTA ATGCAAAGTTCAGATCGTTTCAACGGAACTGGTTGTGTTGACGAAGATCA CATTTATATGCAGTTGCCAAACCAAGGCGGATGTCAAAACCTATATGAAC CTTTGCACCACATTGGAGACACACAAAGTCACTTCGCTTCAAAGGGAAAA ACCATAGTTCATCCTACTGGAACATCAGAGTCGGAGAGAATAAAACTGTC CCAAAAAGACCTCGACAAGAAGGAACGAAGACAAAAAAGTAATCAAAAAT ATGCCCGAAAAAAGAAGGTATCACACAATGAACTCTTTGACAAGGAAAAA GAACTtggaaatcaaaacaaaatgttgaAGAAAAAACATATAAGTATGAC GAGACAAAAAATGTCATGGATTCATAACCTAAAAGTGAAATCcaaatcga aattgaaagaCTTAATTTCTTTACTAAACTGTTCACCTGAATATCAAGAG ATTGCCAGGAATCTTGTGGACGAAATCCAATTTGGAGAAAACTCGAAAAC ATTTTCTATATCTAGCACTAATGTAAATTNTGTGGACGAAATCCAATTAG GAGAAAACTCGAAAACATTTTCTATATCTAGCACTAATGTAAATTGTAAT TTATCGAATAACCTGCCTTGTTTAAAATATAAACACTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056296-exon-scaffold_271-1491911889:28201..30234 | TCONS_00056296-exon-scaffold_271-1491911889:28201..30234 | Clytia hemisphaerica | exon |
TCONS_00056296-exon-scaffold_271-1510915933:28201..30234 | TCONS_00056296-exon-scaffold_271-1510915933:28201..30234 | Clytia hemisphaerica | exon |
TCONS_00056296-exon-scaffold_271-1575043694:28201..30234 | TCONS_00056296-exon-scaffold_271-1575043694:28201..30234 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_271 | supercontig | scaffold_271:28201..30234 . |
Blast
The following BLAST results are available for this feature:
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