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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056296 ID=TCONS_00056296|Name=TCONS_00056296|organism=Clytia hemisphaerica|type=transcript|length=2034bp
AATAACAAAGTCGCGGCTATTGGAAACTTCTTATTATGTTTTAAAAGTGT
TTATATTTTAAACAAGGCAGGTTATTCGATAAATTACAATTTACATTAGT
GCTAGATATAGAAAATGTTTTCGAGTTTTCTCCTAATTGGATTTCGTCCA
CANAATTTACATTAGTGCTAGATATAGAAAATGTTTTCGAGTTTTCTCCA
AATTGGATTTCGTCCACAAGATTCCTGGCAATCTCTTGATATTCAGGTGA
ACAGTTTAGTAAAGAAATTAAGtctttcaatttcgatttgGATTTCACTT
TTAGGTTATGAATCCATGACATTTTTTGTCTCGTCATACTTATATGTTTT
TTCTtcaacattttgttttgatttccaAGTTCTTTTTCCTTGTCAAAGAG
TTCATTGTGTGATACCTTCTTTTTTCGGGCATATTTTTGATTACTTTTTT
GTCTTCGTTCCTTCTTGTCGAGGTCTTTTTGGGACAGTTTTATTCTCTCC
GACTCTGATGTTCCAGTAGGATGAACTATGGTTTTTCCCTTTGAAGCGAA
GTGACTTTGTGTGTCTCCAATGTGGTGCAAAGGTTCATATAGGTTTTGAC
ATCCGCCTTGGTTTGGCAACTGCATATAAATGTGATCTTCGTCAACACAA
CCAGTTCCGTTGAAACGATCTGAACTTTGCATTAACATATCAGTAGTTTT
CAGCAGCATGTTTGAATGATTGGGGAAATTAGTATCTTTCTGTAAACTCG
TTACGTAGTCAgatttttcactttcaaaaaGTTCTCCTTTGAGTACTGGT
AAAGTATCTTGGTAAGAAACCTCTGGTGGTTCCTCGTAAACTATCGACTC
TTTGTTTAAGCATGTTATCGAAGAAGCCAATGAAATATTATCCAACGAAT
TGTCGGGAACAGAATTTTGAAACACATTTTGACGAGGCttaatatcaaaa
taatttttattcggAACTGTTTGCTGTCCCCTCTTAACATTGTTTATGAG
TAAGTTCGTGTTTATTGTCTGTGGATTGTAAATTGTTTTATCACCAAAGT
CTACATGCAGATATGTTTCGGTTCCTTCGTGAAATCCCTCTTGGCTCACT
TGTGATGCAGGAAGTGTTTTCTCGCAGATATTTGCATAAAACGGTGTTGG
GTCTGAAGAAATCGGAAAGGCACTTTGGCAATCGATTTCATCCTCGTGAA
GGCTTTTGACATCTCTTGGTGATGAAATGTTGGAGGAGCTGTAATAAGCA
CTATCGATATCACTTCTATTACAATCGAATTGTGGCTGCGAAGGATAATC
ATAGNATGAAATGTTGGAGGAGCTGTAATAAGCACTATCGATATCACTTC
TATTACAATCGAATTGTGGCTGAGAAGGATAATCATAGACGTTTAAAGTT
GATGAAGACGAAGAAATAGTTGAAAGTCTATCTCTTTCAAATTTATTGGA
ATTCAACGACCAGGACTTGTAAAAATGTGATTGCTTCAACTCTTTGTGAC
CGGCTTGTAATTGTTCACCGTGATTATTCCATTCGGTataattactggaa
gaaaaactGTGACTGTGGCGACCTTCATTTTCATCCATCTTTTTTAACAA
GCACTCAGTATCTCTACCAGAAGGTAACACGACGTCAAGTTCATTATAAT
CATGTAAGTGATCTTGAAAACCTGGCGGGAAACCTGGTAACTGTAATGGC
TGTCTTTTCTCCATGTCGATTGTCGGTCTTGGTCGTAATGTATGCTGTTT
atggaaaatcaaaaaagtttcaacgtCCGAAATAATCTTGTCCAGTTTTT
CTTTCAACGGTAAATTCTTTTCCTCTAATACCAACAAAGGATCGATGCTC
AGTGCATCCAAtttagaaaacaatttattaataaattttacttttttact
aCTCCTTGGCTTTCTTGAGAAACATGGCATTGCATTTCGAAAAGTCGTTG
AGGTTGATCTGCACCCTTCCAAACATAATGATCGACTATTGGTCTTGCAA
TCATTTCTACCAACTTTAAGCAATGAATCATATT Run BLAST on NCBI protein sequence of TCONS_00056296-protein >TCONS_00056296-protein ID=TCONS_00056296-protein|Name=TCONS_00056296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=663bp
YDSLLKVGRNDCKTNSRSLCLEGCRSTSTTFRNAMPCFSRKPRSSKKVKF
INKLFSKLDALSIDPLLVLEEKNLPLKEKLDKIISDVETFLIFHKQHTLR
PRPTIDMEKRQPLQLPGFPPGFQDHLHDYNELDVVLPSGRDTECLLKKMD
ENEGRHSHSFSSSNYTEWNNHGEQLQAGHKELKQSHFYKSWSLNSNKFER
DRLSTISSSSSTLNVYDYPSQPQFDCNRSDIDSAYYSSSNISXYDYPSQP
QFDCNRSDIDSAYYSSSNISSPRDVKSLHEDEIDCQSAFPISSDPTPFYA
NICEKTLPASQVSQEGFHEGTETYLHVDFGDKTIYNPQTINTNLLINNVK
RGQQTVPNKNYFDIKPRQNVFQNSVPDNSLDNISLASSITCLNKESIVYE
EPPEVSYQDTLPVLKGELFESEKSDYVTSLQKDTNFPNHSNMLLKTTDML
MQSSDRFNGTGCVDEDHIYMQLPNQGGCQNLYEPLHHIGDTQSHFASKGK
TIVHPTGTSESERIKLSQKDLDKKERRQKSNQKYARKKKVSHNELFDKEK
ELGNQNKMLKKKHISMTRQKMSWIHNLKVKSKSKLKDLISLLNCSPEYQE
IARNLVDEIQFGENSKTFSISSTNVNXVDEIQLGENSKTFSISSTNVNCN
LSNNLPCLKYKHF Run BLAST on NCBI transcript from alignment at scaffold_271:28201..30234 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056296 ID=TCONS_00056296|Name=TCONS_00056296|organism=Clytia hemisphaerica|type=transcript|length=2034bp|location=Sequence derived from alignment at scaffold_271:28201..30234 (Clytia hemisphaerica)
AATATGATTCATTGCTTAAAGTTGGTAGAAATGATTGCAAGACCAATAGT
CGATCATTATGTTTGGAAGGGTGCAGATCAACCTCAACGACTTTTCGAAA
TGCAATGCCATGTTTCTCAAGAAAGCCAAGGAGtagtaaaaaagtaaaat
ttattaataaattgttttctaaaTTGGATGCACTGAGCATCGATCCTTTG
TTGGTATTAGAGGAAAAGAATTTACCGTTGAAAGAAAAACTGGACAAGAT
TATTTCGGacgttgaaacttttttgattttccatAAACAGCATACATTAC
GACCAAGACCGACAATCGACATGGAGAAAAGACAGCCATTACAGTTACCA
GGTTTCCCGCCAGGTTTTCAAGATCACTTACATGATTATAATGAACTTGA
CGTCGTGTTACCTTCTGGTAGAGATACTGAGTGCTTGTTAAAAAAGATGG
ATGAAAATGAAGGTCGCCACAGTCACagtttttcttccagtaattatACC
GAATGGAATAATCACGGTGAACAATTACAAGCCGGTCACAAAGAGTTGAA
GCAATCACATTTTTACAAGTCCTGGTCGTTGAATTCCAATAAATTTGAAA
GAGATAGACTTTCAACTATTTCTTCGTCTTCATCAACTTTAAACGTCTAT
GATTATCCTTCTCAGCCACAATTCGATTGTAATAGAAGTGATATCGATAG
TGCTTATTACAGCTCCTCCAACATTTCATNCTATGATTATCCTTCGCAGC
CACAATTCGATTGTAATAGAAGTGATATCGATAGTGCTTATTACAGCTCC
TCCAACATTTCATCACCAAGAGATGTCAAAAGCCTTCACGAGGATGAAAT
CGATTGCCAAAGTGCCTTTCCGATTTCTTCAGACCCAACACCGTTTTATG
CAAATATCTGCGAGAAAACACTTCCTGCATCACAAGTGAGCCAAGAGGGA
TTTCACGAAGGAACCGAAACATATCTGCATGTAGACTTTGGTGATAAAAC
AATTTACAATCCACAGACAATAAACACGAACTTACTCATAAACAATGTTA
AGAGGGGACAGCAAACAGTTccgaataaaaattattttgatattaaGCCT
CGTCAAAATGTGTTTCAAAATTCTGTTCCCGACAATTCGTTGGATAATAT
TTCATTGGCTTCTTCGATAACATGCTTAAACAAAGAGTCGATAGTTTACG
AGGAACCACCAGAGGTTTCTTACCAAGATACTTTACCAGTACTCAAAGGA
GAACtttttgaaagtgaaaaatcTGACTACGTAACGAGTTTACAGAAAGA
TACTAATTTCCCCAATCATTCAAACATGCTGCTGAAAACTACTGATATGT
TAATGCAAAGTTCAGATCGTTTCAACGGAACTGGTTGTGTTGACGAAGAT
CACATTTATATGCAGTTGCCAAACCAAGGCGGATGTCAAAACCTATATGA
ACCTTTGCACCACATTGGAGACACACAAAGTCACTTCGCTTCAAAGGGAA
AAACCATAGTTCATCCTACTGGAACATCAGAGTCGGAGAGAATAAAACTG
TCCCAAAAAGACCTCGACAAGAAGGAACGAAGACAAAAAAGTAATCAAAA
ATATGCCCGAAAAAAGAAGGTATCACACAATGAACTCTTTGACAAGGAAA
AAGAACTtggaaatcaaaacaaaatgttgaAGAAAAAACATATAAGTATG
ACGAGACAAAAAATGTCATGGATTCATAACCTAAAAGTGAAATCcaaatc
gaaattgaaagaCTTAATTTCTTTACTAAACTGTTCACCTGAATATCAAG
AGATTGCCAGGAATCTTGTGGACGAAATCCAATTTGGAGAAAACTCGAAA
ACATTTTCTATATCTAGCACTAATGTAAATTNTGTGGACGAAATCCAATT
AGGAGAAAACTCGAAAACATTTTCTATATCTAGCACTAATGTAAATTGTA
ATTTATCGAATAACCTGCCTTGTTTAAAATATAAACACTTTTAAAACATA
ATAAGAAGTTTCCAATAGCCGCGACTTTGTTATT Coding sequence (CDS) from alignment at scaffold_271:28201..30234 >TCONS_00056296 ID=TCONS_00056296|Name=TCONS_00056296|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_271:28201..30234 (Clytia hemisphaerica)
TATGATTCATTGCTTAAAGTTGGTAGAAATGATTGCAAGACCAATAGTCG
ATCATTATGTTTGGAAGGGTGCAGATCAACCTCAACGACTTTTCGAAATG
CAATGCCATGTTTCTCAAGAAAGCCAAGGAGtagtaaaaaagtaaaattt
attaataaattgttttctaaaTTGGATGCACTGAGCATCGATCCTTTGTT
GGTATTAGAGGAAAAGAATTTACCGTTGAAAGAAAAACTGGACAAGATTA
TTTCGGacgttgaaacttttttgattttccatAAACAGCATACATTACGA
CCAAGACCGACAATCGACATGGAGAAAAGACAGCCATTACAGTTACCAGG
TTTCCCGCCAGGTTTTCAAGATCACTTACATGATTATAATGAACTTGACG
TCGTGTTACCTTCTGGTAGAGATACTGAGTGCTTGTTAAAAAAGATGGAT
GAAAATGAAGGTCGCCACAGTCACagtttttcttccagtaattatACCGA
ATGGAATAATCACGGTGAACAATTACAAGCCGGTCACAAAGAGTTGAAGC
AATCACATTTTTACAAGTCCTGGTCGTTGAATTCCAATAAATTTGAAAGA
GATAGACTTTCAACTATTTCTTCGTCTTCATCAACTTTAAACGTCTATGA
TTATCCTTCTCAGCCACAATTCGATTGTAATAGAAGTGATATCGATAGTG
CTTATTACAGCTCCTCCAACATTTCATNCTATGATTATCCTTCGCAGCCA
CAATTCGATTGTAATAGAAGTGATATCGATAGTGCTTATTACAGCTCCTC
CAACATTTCATCACCAAGAGATGTCAAAAGCCTTCACGAGGATGAAATCG
ATTGCCAAAGTGCCTTTCCGATTTCTTCAGACCCAACACCGTTTTATGCA
AATATCTGCGAGAAAACACTTCCTGCATCACAAGTGAGCCAAGAGGGATT
TCACGAAGGAACCGAAACATATCTGCATGTAGACTTTGGTGATAAAACAA
TTTACAATCCACAGACAATAAACACGAACTTACTCATAAACAATGTTAAG
AGGGGACAGCAAACAGTTccgaataaaaattattttgatattaaGCCTCG
TCAAAATGTGTTTCAAAATTCTGTTCCCGACAATTCGTTGGATAATATTT
CATTGGCTTCTTCGATAACATGCTTAAACAAAGAGTCGATAGTTTACGAG
GAACCACCAGAGGTTTCTTACCAAGATACTTTACCAGTACTCAAAGGAGA
ACtttttgaaagtgaaaaatcTGACTACGTAACGAGTTTACAGAAAGATA
CTAATTTCCCCAATCATTCAAACATGCTGCTGAAAACTACTGATATGTTA
ATGCAAAGTTCAGATCGTTTCAACGGAACTGGTTGTGTTGACGAAGATCA
CATTTATATGCAGTTGCCAAACCAAGGCGGATGTCAAAACCTATATGAAC
CTTTGCACCACATTGGAGACACACAAAGTCACTTCGCTTCAAAGGGAAAA
ACCATAGTTCATCCTACTGGAACATCAGAGTCGGAGAGAATAAAACTGTC
CCAAAAAGACCTCGACAAGAAGGAACGAAGACAAAAAAGTAATCAAAAAT
ATGCCCGAAAAAAGAAGGTATCACACAATGAACTCTTTGACAAGGAAAAA
GAACTtggaaatcaaaacaaaatgttgaAGAAAAAACATATAAGTATGAC
GAGACAAAAAATGTCATGGATTCATAACCTAAAAGTGAAATCcaaatcga
aattgaaagaCTTAATTTCTTTACTAAACTGTTCACCTGAATATCAAGAG
ATTGCCAGGAATCTTGTGGACGAAATCCAATTTGGAGAAAACTCGAAAAC
ATTTTCTATATCTAGCACTAATGTAAATTNTGTGGACGAAATCCAATTAG
GAGAAAACTCGAAAACATTTTCTATATCTAGCACTAATGTAAATTGTAAT
TTATCGAATAACCTGCCTTGTTTAAAATATAAACACTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056296-exon-scaffold_271-1491911889:28201..30234 | TCONS_00056296-exon-scaffold_271-1491911889:28201..30234 | Clytia hemisphaerica | exon |
| TCONS_00056296-exon-scaffold_271-1510915933:28201..30234 | TCONS_00056296-exon-scaffold_271-1510915933:28201..30234 | Clytia hemisphaerica | exon |
| TCONS_00056296-exon-scaffold_271-1575043694:28201..30234 | TCONS_00056296-exon-scaffold_271-1575043694:28201..30234 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_271 | supercontig | scaffold_271:28201..30234 . |
Blast
The following BLAST results are available for this feature:
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