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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056298 ID=TCONS_00056298|Name=TCONS_00056298|organism=Clytia hemisphaerica|type=transcript|length=402bp
CATCTTACACTAAGCAATTGGAGTCCTTTGATATATCACCATTGACTGAA
GCAGTTGATGGAGAAGATCCTGAGTCAGCTGAAATTGAGCAGCCAAATGA
TGTCATTGAAAAACAGAATGAGTCGATTAATTCTGACCACGATACTACTG
TCGATAATGAGAGTTCCGAGGAAAATAGGACTTGCTCTGATAGTTGCGAT
GAGGAAAATGAAACTCACGAATCATCAGATACAATAACAAAAGGATTGCT
ATGTGGCCAAGAAAAGAGTGATGAAAATCATGAGCAACCCACCAGTCTTT
ATGAAGTCAATCATGGTGACGATGAGAAAGAATTCGGTGGAGAAGGTAgt
tatgaatttctttataacacccctgtgtcacagacccgctgggaccttAG
GT Run BLAST on NCBI protein sequence of TCONS_00056298-protein >TCONS_00056298-protein ID=TCONS_00056298-protein|Name=TCONS_00056298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
SYTKQLESFDISPLTEAVDGEDPESAEIEQPNDVIEKQNESINSDHDTTV
DNESSEENRTCSDSCDEENETHESSDTITKGLLCGQEKSDENHEQPTSLY
EVNHGDDEKEFGGEGSYEFLYNTPVSQTRWDLR Run BLAST on NCBI transcript from alignment at scaffold_272:1..2380+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056298 ID=TCONS_00056298|Name=TCONS_00056298|organism=Clytia hemisphaerica|type=transcript|length=2380bp|location=Sequence derived from alignment at scaffold_272:1..2380+ (Clytia hemisphaerica)
CATCTTACACTAAGCAATTGGAGTCCTTTGATATATCACCATTGACTGAA
GCAGTTGATGGAGAAGATCCTGAGTCAGCTGAAATTGAGCAGCCAAATGA
TGTCATTGAAAAACAGGTATAGTATTATTTCATCGCCAATATCGTTTTAC
AAAGTTTTCACAAGGCTTATTTGATCTGAGCTTTTTACCGCCGAATCTCT
ACTCTATTTCGATAAGGGACCACAATATTGATAGAATTCTCAGATTCCCT
TAGGAATAATGGAGGTTCAAAATAATGGAATAGAAGCATTATTTTTGGGG
CCTTTTGGAAGAAAATGATTTACATTGGTTACATTGGTAAAACAATTTCG
AATCCTTTTAATCCTTCGTTCCCCATTTTTTAAAAGGGAATGTACACTAT
TTGTAAAGAGAGGTCATAGAGCGTACACTTTCTTTAtgataaaatgtttt
ttccacAGTTTCTTTTTTATCCCGAAATTACAAGTCATTAACAGTCAAAA
CGTAAGGTAGAATTATCCCACCTTAAAATTACACAGATTATGGTTATTAT
TataatcaaagaaaataatatgTAGCTACTTTAAGCTGTCTCCGAAAATA
TAACCTGATCGGATTATTtggataccttatcggggaaaaaaatgtcgaag
ttttatttagtcgttttttttttcgtcggggaaaaatttcgtcacctaga
ggcattttcgtcattttcccccgaccaaaagtTCAAACTCGTCACTTTTC
CCCCTACGAAATTTACAAttcagtcactttcacccaactaaattgtccaa
atgaaatggtttccttcactagcttgaaaaaaatcttgtaattcgacgtt
taaagcactaatttcggttaataaaggtgtaaaaatttaggttttaattt
tggtcggggtttaaaaaatcgcggtaaaagttttggtcgggggtaaaaaa
attgggtaaagGTTTTGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATGATGTCAT
TGAAAAACAGGTATAGTATTATTTCATCGCCAATATCGTTTTACAAAGTT
TTCACAAGGCTTATTTGATCTGAGCTTTTTACCGCCGAATCTCTACTCTA
TTTCGATAAGGGACCACAATATTGATAGAATTCTCAGATTCCCTTAGGAA
TAATGGAGGTTCAAAATAATGGAATAGAAGCATTATTTTTGGGGCCTTTT
GGAAGAAAATGATTTACATTGGTTACATTGGTAAAACAATTTCGAATCCT
TTTAATCCTTCGTTCCCCATTTTTTAAAAGGGAATGTACACTATTTGTAA
AGAGAGGTCATAGAGCGTACACTTTCTTTAtgataaaatgttttttccac
AGTTTCTTTTTTATCCCGAAATTACAAGTCATTAACAGTCAAAACGTAAG
GTAGAATTATCCCACCTTAAAATTACACAGATTATGGTTATTATTataat
caaagaaaataatatgTAGCTACTTTAAGCTGTCTCCGAAAATATAACCT
GATCGGATTATTtggataccttatcggggaaaaaaatgtcgaagttttat
ttagtcgttttttttttcgtcggggaaaaatttcgtcacctagaggcatt
ttcgtcattttcccccgaccaaaagtTCAAACTCGTCACTTTTCCCCCTA
CGAAATTTACAAttcagtcactttcacccaactaaattgtccaaatgaaa
tggtttccttcactagcttgaaaaaaatcttgtaattcgacgtttaaagc
actaatttcggttaataaaggtgtaaaaatttaggttttaattttggtcg
gggtttaaaaaatcgcggtaaaagttttggtcggggataaaaaaattggg
taaagGTTTTGGTcaggtgataaaatatcggggaaaaaattcgtcggggg
gaaatttcgtcaccccctcaaaattttcgttactttcccccgacattttt
ttcccgataaggttaatttaaaagaaaaaaaataaatctcgTTCTTCGAA
TGGAAAACCTTGTAAGTTTTGAACTCTCTTGTATTATTTTTCAGAATGAG
TCGATTAATTCTGACCACGATACTACTGTCGATAATGAGAGTTCCGAGGA
AAATAGGACTTGCTCTGATAGTTGCGATGAGGAAAATGAAACTCACGAAT
CATCAGATACAATAACAAAAGGATTGCTATGTGGCCAAGAAAAGAGTGAT
GAAAATCATGAGCAACCCACCAGTCTTTATGAAGTCAATCATGGTGACGA
TGAGAAAGAATTCGGTGGAGAAGGTAgttatgaatttctttataacaccc
ctgtgtcacagacccgctgggaccttAGGT Coding sequence (CDS) from alignment at scaffold_272:1..2380+ >TCONS_00056298 ID=TCONS_00056298|Name=TCONS_00056298|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_272:1..2380+ (Clytia hemisphaerica)
TCTTACACTAAGCAATTGGAGTCCTTTGATATATCACCATTGACTGAAGC
AGTTGATGGAGAAGATCCTGAGTCAGCTGAAATTGAGCAGCCAAATGATG
TCATTGAAAAACAGAATGAGTCGATTAATTCTGACCACGATACTACTGTC
GATAATGAGAGTTCCGAGGAAAATAGGACTTGCTCTGATAGTTGCGATGA
GGAAAATGAAACTCACGAATCATCAGATACAATAACAAAAGGATTGCTAT
GTGGCCAAGAAAAGAGTGATGAAAATCATGAGCAACCCACCAGTCTTTAT
GAAGTCAATCATGGTGACGATGAGAAAGAATTCGGTGGAGAAGGTAgtta
tgaatttctttataacacccctgtgtcacagacccgctgggaccttAGGT
CTTACACTAAGCAATTGGAGTCCTTTGATATATCACCATTGACTGAAGCA
GTTGATGGAGAAGATCCTGAGTCAGCTGAAATTGAGCAGCCAAATGATGT
CATTGAAAAACAGAATGAGTCGATTAATTCTGACCACGATACTACTGTCG
ATAATGAGAGTTCCGAGGAAAATAGGACTTGCTCTGATAGTTGCGATGAG
GAAAATGAAACTCACGAATCATCAGATACAATAACAAAAGGATTGCTATG
TGGCCAAGAAAAGAGTGATGAAAATCATGAGCAACCCACCAGTCTTTATG
AAGTCAATCATGGTGACGATGAGAAAGAATTCGGTGGAGAAGGTAgttat
gaatttctttataacacccctgtgtcacagacccgctgggaccttAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056298-exon-scaffold_272-1491911889:1..116 | TCONS_00056298-exon-scaffold_272-1491911889:1..116 | Clytia hemisphaerica | exon |
| TCONS_00056298-exon-scaffold_272-1510915933:1..116 | TCONS_00056298-exon-scaffold_272-1510915933:1..116 | Clytia hemisphaerica | exon |
| TCONS_00056298-exon-scaffold_272-1575043694:1..116 | TCONS_00056298-exon-scaffold_272-1575043694:1..116 | Clytia hemisphaerica | exon |
| TCONS_00056298-exon-scaffold_272-1491911889:2095..2380 | TCONS_00056298-exon-scaffold_272-1491911889:2095..2380 | Clytia hemisphaerica | exon |
| TCONS_00056298-exon-scaffold_272-1510915933:2095..2380 | TCONS_00056298-exon-scaffold_272-1510915933:2095..2380 | Clytia hemisphaerica | exon |
| TCONS_00056298-exon-scaffold_272-1575043694:2095..2380 | TCONS_00056298-exon-scaffold_272-1575043694:2095..2380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:1..2380 + |
Blast
The following BLAST results are available for this feature:
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