Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056360 ID=TCONS_00056360|Name=TCONS_00056360|organism=Clytia hemisphaerica|type=transcript|length=825bp AGGAATTAAGTCATAGAAGACATAATGATTAAAGAAACATTGAAGCTATT AGTCGTTTTGATTCTAACAATCCACTGCAGTGCAAACACTATCCAATTGC TGAGAGTTAGAAAAACAGAAATCATTTATACCTCGCAATACACAATCCAC CAGAAGGAACTGACTTGGTACGAAGCGCGTGCCGAATGCGAAAGTTGCGG TGGCAATCTAGTTACCATTGACGATTCGGCCGAACACACATACCTCATTC AAAAACTCAATGAACTGAAAGTCGGACAAGTGTGGATTGGTTTAAACGAT AGAGCTGGTGAAGGGCGATTTCGTTGGGTGAAAGATGATTCAGAGGATGG TTTCAAACAATGGTGTAATGGCCAACCAAACAATGTGGGCGGCCATGAAG ATTGTGTTGAGCTTCGAGATGAAATTCTTGGCAATTGCTTGAATGATCGC CCGTGTGGTTCCTACAGATTACCGTTCATTTGTGAAGTTAATATTCACAA AACATTAACTGTCAAtaccttttaaattttttaacttttatttctatttt tcgtAACGGTAAGATTGATATCCTCTCCCACATCCTTATCTAAACTCAGT TTTAATTCCCTAGAGaattgggacaagctggagtttttacaagctcttat ctgatttggttggtcgttaagatgtaataaaagaatcttattactttttc taaagaacgcgtcatctctatcactttaaatgaccaattagtgaagtatc ttgtaaaaactccagctcattcCAGAGAATTAGGATAGTCAAACAAGAAC TAAACAGATGCACCGCTAAACAATG Run BLAST on NCBI protein sequence of TCONS_00056360-protein >TCONS_00056360-protein ID=TCONS_00056360-protein|Name=TCONS_00056360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MIKETLKLLVVLILTIHCSANTIQLLRVRKTEIIYTSQYTIHQKELTWYE ARAECESCGGNLVTIDDSAEHTYLIQKLNELKVGQVWIGLNDRAGEGRFR WVKDDSEDGFKQWCNGQPNNVGGHEDCVELRDEILGNCLNDRPCGSYRLP FICEVNIHKTLTVNTF Run BLAST on NCBI transcript from alignment at scaffold_273:134885..136785- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056360 ID=TCONS_00056360|Name=TCONS_00056360|organism=Clytia hemisphaerica|type=transcript|length=1901bp|location=Sequence derived from alignment at scaffold_273:134885..136785- (Clytia hemisphaerica) AGGAATTAAGTCATAGAAGACATAATGATTAAAGAAACATTGAAGCTATT
AGTCGTTTTGATTCTAACAATCCACTGCAGTGCAAACACTATCCGTAAGC
ATTTAATAGGTATTTTATTCTAAAACACCCCTGTCTCAGTGACCCAGTAG
GGAAACTTTCATAAATTCTTAAGTGGTACGATTGACCTTAGTGGGGAAAA
CTTCGTCGGGGAAAATTTTCGTCGGGGAAAAATATTCGTCACTTGCTGGT
AGTTGGTAAACGCATTAAGGCCGGGGAAAATTTTCGTCGGGGAAAAATAT
TCGTCACTTGCTGGTAGTTGGTAAACGCATTAAGGCCGGGGAAAATTTTC
GTCACTTGACCAAAATTTCGTCACTTTTCCCCGATTTCTACCCCCGTTAG
GATTTCGATTGAAATTTCCATTCTCACTGTTGGAATAAGTTCTACTGGGA
CAGGGGTGTCAGGCTAACTGATATATACTTTATTTCGATTCCAGAATTGC
TGAGAGTTAGAAAAACAGAAATCATTTATACCTCGCAATACACAATCCAC
CAGAAGGAACTGACTTGGTACGAAGCGCGTGCCGAATGCGAAAGTTGCGG
TGGCAATCTAGTTACCATTGACGATTCGGCCGAACACACATACCTCATTC
AAAAACTCAAGTAAGTTTTTTTCTTGAGATTCCTGCTTGGTTTTATTTTG
GCAGAGTTTCCGATTCGACACATGCCTCTTTCAAAGACTGCAATCAAATC
AGTCTGATAGAAAAAGCCCTAACCTTTGAAAAATAGTTTCTGCGTGGAAT
TTTCAGTACAAGCCTGTAGAAACGAAATTTCTAGAAAGTTTTCTAAGATA
AATTTCACGCTATTTTTATCTGAAAGGGCCCAAAATTTAAAGTTTTGCTG
TTTTCTAAAATCTTTCTTCATGCCAGACGTAATTAATCGAACAGTTCGAT
GACCGAACTAATCGAACTTTGTCGAACTTAATCGAACGACAAAAGTTCTA
TTAAATTCTTTAATCAAAGTTTGACAAAGTTCGATTAAAAATACCGTTCG
ATTGGTTCGATTAATTACGTCTTGTTCATGGAATAACCAATACTGTAATG
ACGCTTTAAATATTTATTTAAATAAGGCAGAAAACATATCAGGTGTAGGA
TAACAATAGACGATATCGGCTTTCCGAATTCTCCCCGAATGATTAACCAT
GATGCAGCGCGCAAAAAAAATCACGGAAAGTCAATATCGTCCGTGAATTT
TTTTGCGCAATGCATCATGGGTAATCATTCGGGGAGAATTCGGAAAGCCG
ATATCGTCTATTATTTTCATAAACATTTCCTTTAAGTGAACTGAAAGTCG
GACAAGTGTGGATTGGTTTAAACGATAGAGCTGGTGAAGGGCGATTTCGT
TGGGTGAAAGATGATTCAGAGGATGGTTTCAAACAATGGTGTAATGGCCA
ACCAAACAATGTGGGCGGCCATGAAGATTGTGTTGAGCTTCGAGATGAAA
TTCTTGGCAATTGCTTGAATGATCGCCCGTGTGGTTCCTACAGATTACCG
TTCATTTGTGAAGTTAATATTCACAAAACATTAACTGTCAATACCTTTTA
AATTTTTTAACTTTTATTTCTATTTTTCGTAACGGTAAGATTGATATCCT
CTCCCACATCCTTATCTAAACTCAGTTTTAATTCCCTAGAGAATTGGGAC
AAGCTGGAGTTTTTACAAGCTCTTATCTGATTTGGTTGGTCGTTAAGATG
TAATAAAAGAATCTTATTACTTTTTCTAAAGAACGCGTCATCTCTATCAC
TTTAAATGACCAATTAGTGAAGTATCTTGTAAAAACTCCAGCTCATTCCA
GAGAATTAGGATAGTCAAACAAGAACTAAACAGATGCACCGCTAAACAAT
G Coding sequence (CDS) from alignment at scaffold_273:134885..136785- >TCONS_00056360 ID=TCONS_00056360|Name=TCONS_00056360|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_273:134885..136785- (Clytia hemisphaerica) TGAACTGAAAGTCGGACAAGTGTGGATTGGTTTAAACGATAGAGCTGGTG AAGGGCGATTTCGTTGGGTGAAAGATGATTCAGAGGATGGTTTCAAACAA TGGTGTAATGGCCAACCAAACAATGTGGGCGGCCATGAAGATTGTGTTGA GCTTCGAGATGAAATTCTTGGCAATTGCTTGAATGATCGCCCGTGTGGTT CCTACAGATTACCGTTCATTTGTGAAGTTAATATTCACAAAACATTAACT GTCAATACCTTTTAAAATTGCTGAGAGTTAGAAAAACAGAAATCATTTAT ACCTCGCAATACACAATCCACCAGAAGGAACTGACTTGGTACGAAGCGCG TGCCGAATGCGAAAGTTGCGGTGGCAATCTAGTTACCATTGACGATTCGG CCGAACACACATACCTCATTCAAAAACTCAAATGATTAAAGAAACATTGA AGCTATTAGTCGTTTTGATTCTAACAATCCACTGCAGTGCAAACACTATC CTGAACTGAAAGTCGGACAAGTGTGGATTGGTTTAAACGATAGAGCTGGT GAAGGGCGATTTCGTTGGGTGAAAGATGATTCAGAGGATGGTTTCAAACA ATGGTGTAATGGCCAACCAAACAATGTGGGCGGCCATGAAGATTGTGTTG AGCTTCGAGATGAAATTCTTGGCAATTGCTTGAATGATCGCCCGTGTGGT TCCTACAGATTACCGTTCATTTGTGAAGTTAATATTCACAAAACATTAAC TGTCAATACCTTTTAAAATTGCTGAGAGTTAGAAAAACAGAAATCATTTA TACCTCGCAATACACAATCCACCAGAAGGAACTGACTTGGTACGAAGCGC GTGCCGAATGCGAAAGTTGCGGTGGCAATCTAGTTACCATTGACGATTCG GCCGAACACACATACCTCATTCAAAAACTCAAATGATTAAAGAAACATTG AAGCTATTAGTCGTTTTGATTCTAACAATCCACTGCAGTGCAAACACTAT CCTGAACTGAAAGTCGGACAAGTGTGGATTGGTTTAAACGATAGAGCTGG TGAAGGGCGATTTCGTTGGGTGAAAGATGATTCAGAGGATGGTTTCAAAC AATGGTGTAATGGCCAACCAAACAATGTGGGCGGCCATGAAGATTGTGTT GAGCTTCGAGATGAAATTCTTGGCAATTGCTTGAATGATCGCCCGTGTGG TTCCTACAGATTACCGTTCATTTGTGAAGTTAATATTCACAAAACATTAA CTGTCAATACCTTTTAAAATTGCTGAGAGTTAGAAAAACAGAAATCATTT ATACCTCGCAATACACAATCCACCAGAAGGAACTGACTTGGTACGAAGCG CGTGCCGAATGCGAAAGTTGCGGTGGCAATCTAGTTACCATTGACGATTC GGCCGAACACACATACCTCATTCAAAAACTCAAATGATTAAAGAAACATT GAAGCTATTAGTCGTTTTGATTCTAACAATCCACTGCAGTGCAAACACTA TCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056360-exon-scaffold_273-1575043694:136692..136785 | TCONS_00056360-exon-scaffold_273-1575043694:136692..136785 | Clytia hemisphaerica | exon |
TCONS_00056360-exon-scaffold_273-1575043694:136126..136291 | TCONS_00056360-exon-scaffold_273-1575043694:136126..136291 | Clytia hemisphaerica | exon |
TCONS_00056360-exon-scaffold_273-1575043694:134885..135449 | TCONS_00056360-exon-scaffold_273-1575043694:134885..135449 | Clytia hemisphaerica | exon |
TCONS_00056360-exon-scaffold_273-1510915933:136692..136785 | TCONS_00056360-exon-scaffold_273-1510915933:136692..136785 | Clytia hemisphaerica | exon |
TCONS_00056360-exon-scaffold_273-1510915933:136126..136291 | TCONS_00056360-exon-scaffold_273-1510915933:136126..136291 | Clytia hemisphaerica | exon |
TCONS_00056360-exon-scaffold_273-1510915933:134885..135449 | TCONS_00056360-exon-scaffold_273-1510915933:134885..135449 | Clytia hemisphaerica | exon |
TCONS_00056360-exon-scaffold_273-1491911889:136692..136785 | TCONS_00056360-exon-scaffold_273-1491911889:136692..136785 | Clytia hemisphaerica | exon |
TCONS_00056360-exon-scaffold_273-1491911889:136126..136291 | TCONS_00056360-exon-scaffold_273-1491911889:136126..136291 | Clytia hemisphaerica | exon |
TCONS_00056360-exon-scaffold_273-1491911889:134885..135449 | TCONS_00056360-exon-scaffold_273-1491911889:134885..135449 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_273 | supercontig | scaffold_273:134885..136785 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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