TCONS_00056360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056360
Unique NameTCONS_00056360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056360 ID=TCONS_00056360|Name=TCONS_00056360|organism=Clytia hemisphaerica|type=transcript|length=825bp
AGGAATTAAGTCATAGAAGACATAATGATTAAAGAAACATTGAAGCTATT
AGTCGTTTTGATTCTAACAATCCACTGCAGTGCAAACACTATCCAATTGC
TGAGAGTTAGAAAAACAGAAATCATTTATACCTCGCAATACACAATCCAC
CAGAAGGAACTGACTTGGTACGAAGCGCGTGCCGAATGCGAAAGTTGCGG
TGGCAATCTAGTTACCATTGACGATTCGGCCGAACACACATACCTCATTC
AAAAACTCAATGAACTGAAAGTCGGACAAGTGTGGATTGGTTTAAACGAT
AGAGCTGGTGAAGGGCGATTTCGTTGGGTGAAAGATGATTCAGAGGATGG
TTTCAAACAATGGTGTAATGGCCAACCAAACAATGTGGGCGGCCATGAAG
ATTGTGTTGAGCTTCGAGATGAAATTCTTGGCAATTGCTTGAATGATCGC
CCGTGTGGTTCCTACAGATTACCGTTCATTTGTGAAGTTAATATTCACAA
AACATTAACTGTCAAtaccttttaaattttttaacttttatttctatttt
tcgtAACGGTAAGATTGATATCCTCTCCCACATCCTTATCTAAACTCAGT
TTTAATTCCCTAGAGaattgggacaagctggagtttttacaagctcttat
ctgatttggttggtcgttaagatgtaataaaagaatcttattactttttc
taaagaacgcgtcatctctatcactttaaatgaccaattagtgaagtatc
ttgtaaaaactccagctcattcCAGAGAATTAGGATAGTCAAACAAGAAC
TAAACAGATGCACCGCTAAACAATG
Run BLAST on NCBI

protein sequence of TCONS_00056360-protein

>TCONS_00056360-protein ID=TCONS_00056360-protein|Name=TCONS_00056360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MIKETLKLLVVLILTIHCSANTIQLLRVRKTEIIYTSQYTIHQKELTWYE
ARAECESCGGNLVTIDDSAEHTYLIQKLNELKVGQVWIGLNDRAGEGRFR
WVKDDSEDGFKQWCNGQPNNVGGHEDCVELRDEILGNCLNDRPCGSYRLP
FICEVNIHKTLTVNTF
Run BLAST on NCBI

transcript from alignment at scaffold_273:134885..136785-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056360 ID=TCONS_00056360|Name=TCONS_00056360|organism=Clytia hemisphaerica|type=transcript|length=1901bp|location=Sequence derived from alignment at scaffold_273:134885..136785- (Clytia hemisphaerica)
AGGAATTAAGTCATAGAAGACATAATGATTAAAGAAACATTGAAGCTATT
AGTCGTTTTGATTCTAACAATCCACTGCAGTGCAAACACTATCCGTAAGC
ATTTAATAGGTATTTTATTCTAAAACACCCCTGTCTCAGTGACCCAGTAG
GGAAACTTTCATAAATTCTTAAGTGGTACGATTGACCTTAGTGGGGAAAA
CTTCGTCGGGGAAAATTTTCGTCGGGGAAAAATATTCGTCACTTGCTGGT
AGTTGGTAAACGCATTAAGGCCGGGGAAAATTTTCGTCGGGGAAAAATAT
TCGTCACTTGCTGGTAGTTGGTAAACGCATTAAGGCCGGGGAAAATTTTC
GTCACTTGACCAAAATTTCGTCACTTTTCCCCGATTTCTACCCCCGTTAG
GATTTCGATTGAAATTTCCATTCTCACTGTTGGAATAAGTTCTACTGGGA
CAGGGGTGTCAGGCTAACTGATATATACTTTATTTCGATTCCAGAATTGC
TGAGAGTTAGAAAAACAGAAATCATTTATACCTCGCAATACACAATCCAC
CAGAAGGAACTGACTTGGTACGAAGCGCGTGCCGAATGCGAAAGTTGCGG
TGGCAATCTAGTTACCATTGACGATTCGGCCGAACACACATACCTCATTC
AAAAACTCAAGTAAGTTTTTTTCTTGAGATTCCTGCTTGGTTTTATTTTG
GCAGAGTTTCCGATTCGACACATGCCTCTTTCAAAGACTGCAATCAAATC
AGTCTGATAGAAAAAGCCCTAACCTTTGAAAAATAGTTTCTGCGTGGAAT
TTTCAGTACAAGCCTGTAGAAACGAAATTTCTAGAAAGTTTTCTAAGATA
AATTTCACGCTATTTTTATCTGAAAGGGCCCAAAATTTAAAGTTTTGCTG
TTTTCTAAAATCTTTCTTCATGCCAGACGTAATTAATCGAACAGTTCGAT
GACCGAACTAATCGAACTTTGTCGAACTTAATCGAACGACAAAAGTTCTA
TTAAATTCTTTAATCAAAGTTTGACAAAGTTCGATTAAAAATACCGTTCG
ATTGGTTCGATTAATTACGTCTTGTTCATGGAATAACCAATACTGTAATG
ACGCTTTAAATATTTATTTAAATAAGGCAGAAAACATATCAGGTGTAGGA
TAACAATAGACGATATCGGCTTTCCGAATTCTCCCCGAATGATTAACCAT
GATGCAGCGCGCAAAAAAAATCACGGAAAGTCAATATCGTCCGTGAATTT
TTTTGCGCAATGCATCATGGGTAATCATTCGGGGAGAATTCGGAAAGCCG
ATATCGTCTATTATTTTCATAAACATTTCCTTTAAGTGAACTGAAAGTCG
GACAAGTGTGGATTGGTTTAAACGATAGAGCTGGTGAAGGGCGATTTCGT
TGGGTGAAAGATGATTCAGAGGATGGTTTCAAACAATGGTGTAATGGCCA
ACCAAACAATGTGGGCGGCCATGAAGATTGTGTTGAGCTTCGAGATGAAA
TTCTTGGCAATTGCTTGAATGATCGCCCGTGTGGTTCCTACAGATTACCG
TTCATTTGTGAAGTTAATATTCACAAAACATTAACTGTCAATACCTTTTA
AATTTTTTAACTTTTATTTCTATTTTTCGTAACGGTAAGATTGATATCCT
CTCCCACATCCTTATCTAAACTCAGTTTTAATTCCCTAGAGAATTGGGAC
AAGCTGGAGTTTTTACAAGCTCTTATCTGATTTGGTTGGTCGTTAAGATG
TAATAAAAGAATCTTATTACTTTTTCTAAAGAACGCGTCATCTCTATCAC
TTTAAATGACCAATTAGTGAAGTATCTTGTAAAAACTCCAGCTCATTCCA
GAGAATTAGGATAGTCAAACAAGAACTAAACAGATGCACCGCTAAACAAT
G

Coding sequence (CDS) from alignment at scaffold_273:134885..136785-

>TCONS_00056360 ID=TCONS_00056360|Name=TCONS_00056360|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_273:134885..136785- (Clytia hemisphaerica)
TGAACTGAAAGTCGGACAAGTGTGGATTGGTTTAAACGATAGAGCTGGTG
AAGGGCGATTTCGTTGGGTGAAAGATGATTCAGAGGATGGTTTCAAACAA
TGGTGTAATGGCCAACCAAACAATGTGGGCGGCCATGAAGATTGTGTTGA
GCTTCGAGATGAAATTCTTGGCAATTGCTTGAATGATCGCCCGTGTGGTT
CCTACAGATTACCGTTCATTTGTGAAGTTAATATTCACAAAACATTAACT
GTCAATACCTTTTAAAATTGCTGAGAGTTAGAAAAACAGAAATCATTTAT
ACCTCGCAATACACAATCCACCAGAAGGAACTGACTTGGTACGAAGCGCG
TGCCGAATGCGAAAGTTGCGGTGGCAATCTAGTTACCATTGACGATTCGG
CCGAACACACATACCTCATTCAAAAACTCAAATGATTAAAGAAACATTGA
AGCTATTAGTCGTTTTGATTCTAACAATCCACTGCAGTGCAAACACTATC
CTGAACTGAAAGTCGGACAAGTGTGGATTGGTTTAAACGATAGAGCTGGT
GAAGGGCGATTTCGTTGGGTGAAAGATGATTCAGAGGATGGTTTCAAACA
ATGGTGTAATGGCCAACCAAACAATGTGGGCGGCCATGAAGATTGTGTTG
AGCTTCGAGATGAAATTCTTGGCAATTGCTTGAATGATCGCCCGTGTGGT
TCCTACAGATTACCGTTCATTTGTGAAGTTAATATTCACAAAACATTAAC
TGTCAATACCTTTTAAAATTGCTGAGAGTTAGAAAAACAGAAATCATTTA
TACCTCGCAATACACAATCCACCAGAAGGAACTGACTTGGTACGAAGCGC
GTGCCGAATGCGAAAGTTGCGGTGGCAATCTAGTTACCATTGACGATTCG
GCCGAACACACATACCTCATTCAAAAACTCAAATGATTAAAGAAACATTG
AAGCTATTAGTCGTTTTGATTCTAACAATCCACTGCAGTGCAAACACTAT
CCTGAACTGAAAGTCGGACAAGTGTGGATTGGTTTAAACGATAGAGCTGG
TGAAGGGCGATTTCGTTGGGTGAAAGATGATTCAGAGGATGGTTTCAAAC
AATGGTGTAATGGCCAACCAAACAATGTGGGCGGCCATGAAGATTGTGTT
GAGCTTCGAGATGAAATTCTTGGCAATTGCTTGAATGATCGCCCGTGTGG
TTCCTACAGATTACCGTTCATTTGTGAAGTTAATATTCACAAAACATTAA
CTGTCAATACCTTTTAAAATTGCTGAGAGTTAGAAAAACAGAAATCATTT
ATACCTCGCAATACACAATCCACCAGAAGGAACTGACTTGGTACGAAGCG
CGTGCCGAATGCGAAAGTTGCGGTGGCAATCTAGTTACCATTGACGATTC
GGCCGAACACACATACCTCATTCAAAAACTCAAATGATTAAAGAAACATT
GAAGCTATTAGTCGTTTTGATTCTAACAATCCACTGCAGTGCAAACACTA
TCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035508XLOC_035508Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056360-proteinTCONS_00056360-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056360-exon-scaffold_273-1575043694:136692..136785TCONS_00056360-exon-scaffold_273-1575043694:136692..136785Clytia hemisphaericaexon
TCONS_00056360-exon-scaffold_273-1575043694:136126..136291TCONS_00056360-exon-scaffold_273-1575043694:136126..136291Clytia hemisphaericaexon
TCONS_00056360-exon-scaffold_273-1575043694:134885..135449TCONS_00056360-exon-scaffold_273-1575043694:134885..135449Clytia hemisphaericaexon
TCONS_00056360-exon-scaffold_273-1510915933:136692..136785TCONS_00056360-exon-scaffold_273-1510915933:136692..136785Clytia hemisphaericaexon
TCONS_00056360-exon-scaffold_273-1510915933:136126..136291TCONS_00056360-exon-scaffold_273-1510915933:136126..136291Clytia hemisphaericaexon
TCONS_00056360-exon-scaffold_273-1510915933:134885..135449TCONS_00056360-exon-scaffold_273-1510915933:134885..135449Clytia hemisphaericaexon
TCONS_00056360-exon-scaffold_273-1491911889:136692..136785TCONS_00056360-exon-scaffold_273-1491911889:136692..136785Clytia hemisphaericaexon
TCONS_00056360-exon-scaffold_273-1491911889:136126..136291TCONS_00056360-exon-scaffold_273-1491911889:136126..136291Clytia hemisphaericaexon
TCONS_00056360-exon-scaffold_273-1491911889:134885..135449TCONS_00056360-exon-scaffold_273-1491911889:134885..135449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:134885..136785 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.988503	0.793264	1.06314	1.08946	1.03544	0.867216	1.72645	2.53818	4.84475	1.51502	4.06186	1.33618	7.59712	9.66514	0.531357	0.70367	1.99652	0.976894	0.2468	0.322067	0.454127	0.167212	0.741146	0.903598	0.632325	0.450754	0	0.173149	0.323561	0.526684
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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