TCONS_00056467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056467
Unique NameTCONS_00056467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1110

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056467 ID=TCONS_00056467|Name=TCONS_00056467|organism=Clytia hemisphaerica|type=transcript|length=1110bp
ATTTAACGTTCAATTGACAGATACTTAAGGAGCCGACATGAAGTGGTTTA
TCATATTGACAAGTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGT
TATATGGATTACATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCG
ACGGGAGTTCGGAAATCTCGGAAGATATTATTACGATGTTATTGAAAAAG
ATGATCCGTTTCCATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACC
TCCGCAGAAAGATTAGGAATGGATGGTGACGACGAAAATCGAGAAATATC
GTTAGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTG
CTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTT
GGGGAACAAAGACGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGC
AGAACTCGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCAT
CTCGAAGTCTCAACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAG
CGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCT
TGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAA
GTCTCAACGGAAAACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGA
CGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAG
AAAAGACAACGAAATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCA
ACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAG
CTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGA
CAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAA
AACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAAC
GACGAAAAGCGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGA
AATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGC
TTAGAATCGA
Run BLAST on NCBI

protein sequence of TCONS_00056467-protein

>TCONS_00056467-protein ID=TCONS_00056467-protein|Name=TCONS_00056467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MKWFIILTSFILCARAIEDDSYMDYMSRRSHSWPLPNRREFGNLGRYYYD
VIEKDDPFPLEQERELDVKETSAERLGMDGDDENREISLAELERKDNEIH
EQDLAVSRSLNGKPLRIPSMFGEQRRVLNDEKRELSLAELERKDNEIHEQ
DLAASRSLNGKPLRIASMFGERRRELNDEKRELSLAELERKDNEIHEQDL
AASRSLNGKPLRIASMFGERRRELNDEKRELSLAELERKDNEIYEQDLAA
SRSLNGKPLRIPSMFGERRRELNDEKRELSLAELERKDNEIHEQDLAASR
SLNGKPLRIPSMFGEQRRELNDEKRELSLAELERKDNEIHEQDLAASRSL
NGKPLRI
Run BLAST on NCBI

transcript from alignment at scaffold_276:29056..31397-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056467 ID=TCONS_00056467|Name=TCONS_00056467|organism=Clytia hemisphaerica|type=transcript|length=2342bp|location=Sequence derived from alignment at scaffold_276:29056..31397- (Clytia hemisphaerica)
ATTTAACGTTCAATTGACAGATACTTAAGGTGAGCAGTTTTTAGTTAAAG TTGAAGCATAAAACACCTCCTTCTCATAGGATTTTTTCAGCCAGTAGGGA TAAAAATAACTGACTGGAACTCGATGGGGACTACATAATTTTTATGGCTG GGGATTTAAATTTCATTGTTTTTAAGTCAGAAAATTCAGTGGGGGTCGAA AAAATAGCATAATTTTTTGCAGCGACGATTAGTGTGGTGTGATTAGATTA TTTTCAGTGGGGACAAATTTAAAAGTAAAATTTTCCACTGGGGACGATAT TTTGGCCAAAATTTCCAGTGAAAGGGGTCCCAGTAAGTCTGGGAGAAGAG GGTGTCAAAAGCACTGTGTTTTATATGAACCCTTTGAAATCCTTTGATCG GAGCTTTTTTAAATTGGTATACCCTAATGGTAGCACTACTCTATAGCGGT GTAAATGCATCGATAGCTCTAGATCTAGTTTTATTAAACACTTATTCGCA ATTGAACGTTTAAAAAAGTTTAATTGCTCCTCTTTAAAATTTAAGAATCA CTTAAGAACATCTAAAGGCTCACTTCAATGCACCTTTTCGACCGTAGCCG CCAATTGCCGCGCAGGCATTTTTTTTGTCCGTTTTACCACCCTAAAACCG TCCCAGTCTTTTTTTCGCACCTAAAGACAATGGAAAAAAGTGTAAATAAA GGATTGGGTCGAGTTTACGGTGGTAAAGTAAATTATAAAGTGGTACAACG CTCGAAAAGGTGTATATATGTAATTTTTATGGATAAAAACTTTATTTTTA ATTATTCAAATTTATAATCATTGTAGGAGCCGACATGAAGTGGTTTATCA TATTGACAAGTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGTTAT ATGGATTACATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCGACG GGAGTTCGGAAATCTCGGAAGATATTATTACGATGTTATTGAAAAAGATG ATCCGTTTCCATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACCTCC GCAGAAAGATTAGGAATGGATGGTGACGACGAAAATCGAGAAATATCGTT AGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTG TATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGG GAACAAAGACGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGA ACTCGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTC GAAGTCTCAACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAGCGA AGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGA GAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTC TCAACGGAAAACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGC GAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAGAAA AGACAACGAAATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACG GAAAACCGCTTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTG AACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAA CGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAAC CGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAACGAC GAAAAGCGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAAT CCATGAGCAAGACCTTGCTGCATCTCGAAGGCTTAACGGAAAACCTCTTA GAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAG CGAGAATTATCGTTGGTAGAGCTTGAGAGAAAAGACAACGAAATCCATGA GCAAGACCTTGCTGTATCTCGAAGTCTCAACGGAAAACCTCTTAGAATCC CATCCATGCTTGGGGAACGAAGACGAGAGCTGAGCGACAACGAAAAGCGA GAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACAAAATTCATGAGCA AGACCTTGCTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCAT CCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTA TCGTTGGCAGAGCTTGAAAGAAAAGACAACGAAATCCATGAGCAAGACCT TGCTGCATCTCAAAAGCTAAACGGAAAACCGCTTAGAATCGA

Coding sequence (CDS) from alignment at scaffold_276:29056..31397-

>TCONS_00056467 ID=TCONS_00056467|Name=TCONS_00056467|organism=Clytia hemisphaerica|type=CDS|length=3213bp|location=Sequence derived from alignment at scaffold_276:29056..31397- (Clytia hemisphaerica)
CGCTTAGAATCTCTCAACGGAAAACATGAAGTGGTTTATCATATTGACAA
GTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGTTATATGGATTAC
ATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCGACGGGAGTTCGG
AAATCTCGGAAGATATTATTACGATGTTATTGAAAAAGATGATCCGTTTC
CATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACCTCCGCAGAAAGA
TTAGGAATGGATGGTGACGACGAAAATCGAGAAATATCGTTAGCAGAACT
TGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGTATCTCGAA
GTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGA
CGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTCGAGAG
AAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCA
ACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAG
CTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGA
CAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAA
AACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAAC
GACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGA
AATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGC
TTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAA
AAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAATCCA
TGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAGAA
TCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAACGACGAAAAGCGA
GAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCA
AGACCTTGCTGCATCTCGAAGCGCTTAGAATCTCTCAACGGAAAACATGA
AGTGGTTTATCATATTGACAAGTTTCATTTTGTGTGCACGTGCCATCGAA
GATGACAGTTATATGGATTACATGAGTAGAAGATCACACTCCTGGCCGCT
TCCCAATCGACGGGAGTTCGGAAATCTCGGAAGATATTATTACGATGTTA
TTGAAAAAGATGATCCGTTTCCATTGGAACAAGAGAGAGAGTTGGATGTT
AAGGAAACCTCCGCAGAAAGATTAGGAATGGATGGTGACGACGAAAATCG
AGAAATATCGTTAGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGC
AAGACCTTGCTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCA
TCCATGTTTGGGGAACAAAGACGCGTGCTGAACGACGAAAAGCGAGAATT
ATCGTTGGCAGAACTCGAGAGAAAAGACAACGAAATCCATGAGCAAGACC
TTGCTGCATCTCGAAGTCTCAACGGAAAACCTCTTAGAATCGCATCCATG
TTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTT
GGCAGAGCTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTG
CATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCGCATCCATGTTTGGG
GAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGA
ACTTGAGAGAAAAGACAACGAAATCTATGAGCAAGACCTTGCTGCATCTC
GAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAGCGA
AGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGA
GAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTC
TCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGC
GAGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTTGAGAGAAA
AGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGCGCTTAGA
ATCTCTCAACGGAAAACATGAAGTGGTTTATCATATTGACAAGTTTCATT
TTGTGTGCACGTGCCATCGAAGATGACAGTTATATGGATTACATGAGTAG
AAGATCACACTCCTGGCCGCTTCCCAATCGACGGGAGTTCGGAAATCTCG
GAAGATATTATTACGATGTTATTGAAAAAGATGATCCGTTTCCATTGGAA
CAAGAGAGAGAGTTGGATGTTAAGGAAACCTCCGCAGAAAGATTAGGAAT
GGATGGTGACGACGAAAATCGAGAAATATCGTTAGCAGAACTTGAGAGAA
AAGACAACGAAATCCATGAGCAAGACCTTGCTGTATCTCGAAGTCTCAAC
GGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGCGTGCT
GAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTCGAGAGAAAAGACA
ACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAA
CCTCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGA
CGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAA
TCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTT
AGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAA
ACGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAATCTATG
AGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAGAATC
CCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGA
ATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAATCCATGAGCAAG
ACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCC
ATGTTTGGGGAACAAAGACGCGAGCTGAACGACGAAAAGCGAGAATTATC
GTTGGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTG
CTGCATCTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035580XLOC_035580Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056467-proteinTCONS_00056467-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056467-exon-scaffold_276-1575043694:31369..31397TCONS_00056467-exon-scaffold_276-1575043694:31369..31397Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1575043694:29518..30571TCONS_00056467-exon-scaffold_276-1575043694:29518..30571Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1575043694:29360..29373TCONS_00056467-exon-scaffold_276-1575043694:29360..29373Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1575043694:29056..29068TCONS_00056467-exon-scaffold_276-1575043694:29056..29068Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1510915933:31369..31397TCONS_00056467-exon-scaffold_276-1510915933:31369..31397Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1510915933:29518..30571TCONS_00056467-exon-scaffold_276-1510915933:29518..30571Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1510915933:29360..29373TCONS_00056467-exon-scaffold_276-1510915933:29360..29373Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1510915933:29056..29068TCONS_00056467-exon-scaffold_276-1510915933:29056..29068Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1491911889:31369..31397TCONS_00056467-exon-scaffold_276-1491911889:31369..31397Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1491911889:29518..30571TCONS_00056467-exon-scaffold_276-1491911889:29518..30571Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1491911889:29360..29373TCONS_00056467-exon-scaffold_276-1491911889:29360..29373Clytia hemisphaericaexon
TCONS_00056467-exon-scaffold_276-1491911889:29056..29068TCONS_00056467-exon-scaffold_276-1491911889:29056..29068Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:29056..31397 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (15.0508 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.121769 0.244147 0.11513 0.101553 0 0 0 0 0 0 0.145521 0 0 0 0.0356847 0.0518099 15.0508 13.9985 0.314268 0.266824 3.96323 1.2951 1.43769 1.61852 1.47325 1.57731 1.77499 0.210192 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Sequence
Match NameE-valueIdentityDescription
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