Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056467 ID=TCONS_00056467|Name=TCONS_00056467|organism=Clytia hemisphaerica|type=transcript|length=1110bp ATTTAACGTTCAATTGACAGATACTTAAGGAGCCGACATGAAGTGGTTTA TCATATTGACAAGTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGT TATATGGATTACATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCG ACGGGAGTTCGGAAATCTCGGAAGATATTATTACGATGTTATTGAAAAAG ATGATCCGTTTCCATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACC TCCGCAGAAAGATTAGGAATGGATGGTGACGACGAAAATCGAGAAATATC GTTAGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTG CTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTT GGGGAACAAAGACGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGC AGAACTCGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCAT CTCGAAGTCTCAACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAG CGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCT TGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAA GTCTCAACGGAAAACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGA CGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAG AAAAGACAACGAAATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCA ACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAG CTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGA CAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAA AACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAAC GACGAAAAGCGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGA AATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGC TTAGAATCGA Run BLAST on NCBI protein sequence of TCONS_00056467-protein >TCONS_00056467-protein ID=TCONS_00056467-protein|Name=TCONS_00056467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MKWFIILTSFILCARAIEDDSYMDYMSRRSHSWPLPNRREFGNLGRYYYD VIEKDDPFPLEQERELDVKETSAERLGMDGDDENREISLAELERKDNEIH EQDLAVSRSLNGKPLRIPSMFGEQRRVLNDEKRELSLAELERKDNEIHEQ DLAASRSLNGKPLRIASMFGERRRELNDEKRELSLAELERKDNEIHEQDL AASRSLNGKPLRIASMFGERRRELNDEKRELSLAELERKDNEIYEQDLAA SRSLNGKPLRIPSMFGERRRELNDEKRELSLAELERKDNEIHEQDLAASR SLNGKPLRIPSMFGEQRRELNDEKRELSLAELERKDNEIHEQDLAASRSL NGKPLRI Run BLAST on NCBI transcript from alignment at scaffold_276:29056..31397- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056467 ID=TCONS_00056467|Name=TCONS_00056467|organism=Clytia hemisphaerica|type=transcript|length=2342bp|location=Sequence derived from alignment at scaffold_276:29056..31397- (Clytia hemisphaerica) ATTTAACGTTCAATTGACAGATACTTAAGGTGAGCAGTTTTTAGTTAAAG
TTGAAGCATAAAACACCTCCTTCTCATAGGATTTTTTCAGCCAGTAGGGA
TAAAAATAACTGACTGGAACTCGATGGGGACTACATAATTTTTATGGCTG
GGGATTTAAATTTCATTGTTTTTAAGTCAGAAAATTCAGTGGGGGTCGAA
AAAATAGCATAATTTTTTGCAGCGACGATTAGTGTGGTGTGATTAGATTA
TTTTCAGTGGGGACAAATTTAAAAGTAAAATTTTCCACTGGGGACGATAT
TTTGGCCAAAATTTCCAGTGAAAGGGGTCCCAGTAAGTCTGGGAGAAGAG
GGTGTCAAAAGCACTGTGTTTTATATGAACCCTTTGAAATCCTTTGATCG
GAGCTTTTTTAAATTGGTATACCCTAATGGTAGCACTACTCTATAGCGGT
GTAAATGCATCGATAGCTCTAGATCTAGTTTTATTAAACACTTATTCGCA
ATTGAACGTTTAAAAAAGTTTAATTGCTCCTCTTTAAAATTTAAGAATCA
CTTAAGAACATCTAAAGGCTCACTTCAATGCACCTTTTCGACCGTAGCCG
CCAATTGCCGCGCAGGCATTTTTTTTGTCCGTTTTACCACCCTAAAACCG
TCCCAGTCTTTTTTTCGCACCTAAAGACAATGGAAAAAAGTGTAAATAAA
GGATTGGGTCGAGTTTACGGTGGTAAAGTAAATTATAAAGTGGTACAACG
CTCGAAAAGGTGTATATATGTAATTTTTATGGATAAAAACTTTATTTTTA
ATTATTCAAATTTATAATCATTGTAGGAGCCGACATGAAGTGGTTTATCA
TATTGACAAGTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGTTAT
ATGGATTACATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCGACG
GGAGTTCGGAAATCTCGGAAGATATTATTACGATGTTATTGAAAAAGATG
ATCCGTTTCCATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACCTCC
GCAGAAAGATTAGGAATGGATGGTGACGACGAAAATCGAGAAATATCGTT
AGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTG
TATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGG
GAACAAAGACGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGA
ACTCGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTC
GAAGTCTCAACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAGCGA
AGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGA
GAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTC
TCAACGGAAAACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGC
GAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAGAAA
AGACAACGAAATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACG
GAAAACCGCTTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTG
AACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAA
CGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAAC
CGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAACGAC
GAAAAGCGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAAT
CCATGAGCAAGACCTTGCTGCATCTCGAAGGCTTAACGGAAAACCTCTTA
GAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAG
CGAGAATTATCGTTGGTAGAGCTTGAGAGAAAAGACAACGAAATCCATGA
GCAAGACCTTGCTGTATCTCGAAGTCTCAACGGAAAACCTCTTAGAATCC
CATCCATGCTTGGGGAACGAAGACGAGAGCTGAGCGACAACGAAAAGCGA
GAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACAAAATTCATGAGCA
AGACCTTGCTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCAT
CCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTA
TCGTTGGCAGAGCTTGAAAGAAAAGACAACGAAATCCATGAGCAAGACCT
TGCTGCATCTCAAAAGCTAAACGGAAAACCGCTTAGAATCGA Coding sequence (CDS) from alignment at scaffold_276:29056..31397- >TCONS_00056467 ID=TCONS_00056467|Name=TCONS_00056467|organism=Clytia hemisphaerica|type=CDS|length=3213bp|location=Sequence derived from alignment at scaffold_276:29056..31397- (Clytia hemisphaerica) CGCTTAGAATCTCTCAACGGAAAACATGAAGTGGTTTATCATATTGACAA GTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGTTATATGGATTAC ATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCGACGGGAGTTCGG AAATCTCGGAAGATATTATTACGATGTTATTGAAAAAGATGATCCGTTTC CATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACCTCCGCAGAAAGA TTAGGAATGGATGGTGACGACGAAAATCGAGAAATATCGTTAGCAGAACT TGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGTATCTCGAA GTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGA CGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTCGAGAG AAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCA ACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAG CTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGA CAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAA AACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAAC GACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGA AATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGC TTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAA AAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAATCCA TGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAGAA TCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAACGACGAAAAGCGA GAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCA AGACCTTGCTGCATCTCGAAGCGCTTAGAATCTCTCAACGGAAAACATGA AGTGGTTTATCATATTGACAAGTTTCATTTTGTGTGCACGTGCCATCGAA GATGACAGTTATATGGATTACATGAGTAGAAGATCACACTCCTGGCCGCT TCCCAATCGACGGGAGTTCGGAAATCTCGGAAGATATTATTACGATGTTA TTGAAAAAGATGATCCGTTTCCATTGGAACAAGAGAGAGAGTTGGATGTT AAGGAAACCTCCGCAGAAAGATTAGGAATGGATGGTGACGACGAAAATCG AGAAATATCGTTAGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGC AAGACCTTGCTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCA TCCATGTTTGGGGAACAAAGACGCGTGCTGAACGACGAAAAGCGAGAATT ATCGTTGGCAGAACTCGAGAGAAAAGACAACGAAATCCATGAGCAAGACC TTGCTGCATCTCGAAGTCTCAACGGAAAACCTCTTAGAATCGCATCCATG TTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTT GGCAGAGCTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTG CATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCGCATCCATGTTTGGG GAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGA ACTTGAGAGAAAAGACAACGAAATCTATGAGCAAGACCTTGCTGCATCTC GAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAGCGA AGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGA GAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTC TCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGC GAGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTTGAGAGAAA AGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGCGCTTAGA ATCTCTCAACGGAAAACATGAAGTGGTTTATCATATTGACAAGTTTCATT TTGTGTGCACGTGCCATCGAAGATGACAGTTATATGGATTACATGAGTAG AAGATCACACTCCTGGCCGCTTCCCAATCGACGGGAGTTCGGAAATCTCG GAAGATATTATTACGATGTTATTGAAAAAGATGATCCGTTTCCATTGGAA CAAGAGAGAGAGTTGGATGTTAAGGAAACCTCCGCAGAAAGATTAGGAAT GGATGGTGACGACGAAAATCGAGAAATATCGTTAGCAGAACTTGAGAGAA AAGACAACGAAATCCATGAGCAAGACCTTGCTGTATCTCGAAGTCTCAAC GGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGCGTGCT GAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTCGAGAGAAAAGACA ACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAA CCTCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGA CGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAA TCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTT AGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAA ACGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAATCTATG AGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAGAATC CCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGA ATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAATCCATGAGCAAG ACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCC ATGTTTGGGGAACAAAGACGCGAGCTGAACGACGAAAAGCGAGAATTATC GTTGGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTG CTGCATCTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056467-exon-scaffold_276-1575043694:31369..31397 | TCONS_00056467-exon-scaffold_276-1575043694:31369..31397 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1575043694:29518..30571 | TCONS_00056467-exon-scaffold_276-1575043694:29518..30571 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1575043694:29360..29373 | TCONS_00056467-exon-scaffold_276-1575043694:29360..29373 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1575043694:29056..29068 | TCONS_00056467-exon-scaffold_276-1575043694:29056..29068 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1510915933:31369..31397 | TCONS_00056467-exon-scaffold_276-1510915933:31369..31397 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1510915933:29518..30571 | TCONS_00056467-exon-scaffold_276-1510915933:29518..30571 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1510915933:29360..29373 | TCONS_00056467-exon-scaffold_276-1510915933:29360..29373 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1510915933:29056..29068 | TCONS_00056467-exon-scaffold_276-1510915933:29056..29068 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1491911889:31369..31397 | TCONS_00056467-exon-scaffold_276-1491911889:31369..31397 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1491911889:29518..30571 | TCONS_00056467-exon-scaffold_276-1491911889:29518..30571 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1491911889:29360..29373 | TCONS_00056467-exon-scaffold_276-1491911889:29360..29373 | Clytia hemisphaerica | exon |
TCONS_00056467-exon-scaffold_276-1491911889:29056..29068 | TCONS_00056467-exon-scaffold_276-1491911889:29056..29068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_276 | supercontig | scaffold_276:29056..31397 - |
Blast
The following BLAST results are available for this feature:
|