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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056467 ID=TCONS_00056467|Name=TCONS_00056467|organism=Clytia hemisphaerica|type=transcript|length=1110bp
ATTTAACGTTCAATTGACAGATACTTAAGGAGCCGACATGAAGTGGTTTA
TCATATTGACAAGTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGT
TATATGGATTACATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCG
ACGGGAGTTCGGAAATCTCGGAAGATATTATTACGATGTTATTGAAAAAG
ATGATCCGTTTCCATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACC
TCCGCAGAAAGATTAGGAATGGATGGTGACGACGAAAATCGAGAAATATC
GTTAGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTG
CTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTT
GGGGAACAAAGACGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGC
AGAACTCGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCAT
CTCGAAGTCTCAACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAG
CGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCT
TGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAA
GTCTCAACGGAAAACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGA
CGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAG
AAAAGACAACGAAATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCA
ACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAG
CTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGA
CAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAA
AACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAAC
GACGAAAAGCGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGA
AATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGC
TTAGAATCGA Run BLAST on NCBI protein sequence of TCONS_00056467-protein >TCONS_00056467-protein ID=TCONS_00056467-protein|Name=TCONS_00056467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MKWFIILTSFILCARAIEDDSYMDYMSRRSHSWPLPNRREFGNLGRYYYD
VIEKDDPFPLEQERELDVKETSAERLGMDGDDENREISLAELERKDNEIH
EQDLAVSRSLNGKPLRIPSMFGEQRRVLNDEKRELSLAELERKDNEIHEQ
DLAASRSLNGKPLRIASMFGERRRELNDEKRELSLAELERKDNEIHEQDL
AASRSLNGKPLRIASMFGERRRELNDEKRELSLAELERKDNEIYEQDLAA
SRSLNGKPLRIPSMFGERRRELNDEKRELSLAELERKDNEIHEQDLAASR
SLNGKPLRIPSMFGEQRRELNDEKRELSLAELERKDNEIHEQDLAASRSL
NGKPLRI Run BLAST on NCBI transcript from alignment at scaffold_276:29056..31397- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056467 ID=TCONS_00056467|Name=TCONS_00056467|organism=Clytia hemisphaerica|type=transcript|length=2342bp|location=Sequence derived from alignment at scaffold_276:29056..31397- (Clytia hemisphaerica)
ATTTAACGTTCAATTGACAGATACTTAAGGTGAGCAGTTTTTAGTTAAAG
TTGAAGCATAAAACACCTCCTTCTCATAGGATTTTTTCAGCCAGTAGGGA
TAAAAATAACTGACTGGAACTCGATGGGGACTACATAATTTTTATGGCTG
GGGATTTAAATTTCATTGTTTTTAAGTCAGAAAATTCAGTGGGGGTCGAA
AAAATAGCATAATTTTTTGCAGCGACGATTAGTGTGGTGTGATTAGATTA
TTTTCAGTGGGGACAAATTTAAAAGTAAAATTTTCCACTGGGGACGATAT
TTTGGCCAAAATTTCCAGTGAAAGGGGTCCCAGTAAGTCTGGGAGAAGAG
GGTGTCAAAAGCACTGTGTTTTATATGAACCCTTTGAAATCCTTTGATCG
GAGCTTTTTTAAATTGGTATACCCTAATGGTAGCACTACTCTATAGCGGT
GTAAATGCATCGATAGCTCTAGATCTAGTTTTATTAAACACTTATTCGCA
ATTGAACGTTTAAAAAAGTTTAATTGCTCCTCTTTAAAATTTAAGAATCA
CTTAAGAACATCTAAAGGCTCACTTCAATGCACCTTTTCGACCGTAGCCG
CCAATTGCCGCGCAGGCATTTTTTTTGTCCGTTTTACCACCCTAAAACCG
TCCCAGTCTTTTTTTCGCACCTAAAGACAATGGAAAAAAGTGTAAATAAA
GGATTGGGTCGAGTTTACGGTGGTAAAGTAAATTATAAAGTGGTACAACG
CTCGAAAAGGTGTATATATGTAATTTTTATGGATAAAAACTTTATTTTTA
ATTATTCAAATTTATAATCATTGTAGGAGCCGACATGAAGTGGTTTATCA
TATTGACAAGTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGTTAT
ATGGATTACATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCGACG
GGAGTTCGGAAATCTCGGAAGATATTATTACGATGTTATTGAAAAAGATG
ATCCGTTTCCATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACCTCC
GCAGAAAGATTAGGAATGGATGGTGACGACGAAAATCGAGAAATATCGTT
AGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTG
TATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGG
GAACAAAGACGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGA
ACTCGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTC
GAAGTCTCAACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAGCGA
AGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGA
GAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTC
TCAACGGAAAACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGC
GAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAGAAA
AGACAACGAAATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACG
GAAAACCGCTTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTG
AACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAA
CGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAAC
CGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAACGAC
GAAAAGCGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAAT
CCATGAGCAAGACCTTGCTGCATCTCGAAGGCTTAACGGAAAACCTCTTA
GAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAG
CGAGAATTATCGTTGGTAGAGCTTGAGAGAAAAGACAACGAAATCCATGA
GCAAGACCTTGCTGTATCTCGAAGTCTCAACGGAAAACCTCTTAGAATCC
CATCCATGCTTGGGGAACGAAGACGAGAGCTGAGCGACAACGAAAAGCGA
GAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACAAAATTCATGAGCA
AGACCTTGCTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCAT
CCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTA
TCGTTGGCAGAGCTTGAAAGAAAAGACAACGAAATCCATGAGCAAGACCT
TGCTGCATCTCAAAAGCTAAACGGAAAACCGCTTAGAATCGA Coding sequence (CDS) from alignment at scaffold_276:29056..31397- >TCONS_00056467 ID=TCONS_00056467|Name=TCONS_00056467|organism=Clytia hemisphaerica|type=CDS|length=3213bp|location=Sequence derived from alignment at scaffold_276:29056..31397- (Clytia hemisphaerica)
CGCTTAGAATCTCTCAACGGAAAACATGAAGTGGTTTATCATATTGACAA
GTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGTTATATGGATTAC
ATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCGACGGGAGTTCGG
AAATCTCGGAAGATATTATTACGATGTTATTGAAAAAGATGATCCGTTTC
CATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACCTCCGCAGAAAGA
TTAGGAATGGATGGTGACGACGAAAATCGAGAAATATCGTTAGCAGAACT
TGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGTATCTCGAA
GTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGA
CGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTCGAGAG
AAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCA
ACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAG
CTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGA
CAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAA
AACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAAC
GACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGA
AATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGC
TTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAA
AAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAATCCA
TGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAGAA
TCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAACGACGAAAAGCGA
GAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCA
AGACCTTGCTGCATCTCGAAGCGCTTAGAATCTCTCAACGGAAAACATGA
AGTGGTTTATCATATTGACAAGTTTCATTTTGTGTGCACGTGCCATCGAA
GATGACAGTTATATGGATTACATGAGTAGAAGATCACACTCCTGGCCGCT
TCCCAATCGACGGGAGTTCGGAAATCTCGGAAGATATTATTACGATGTTA
TTGAAAAAGATGATCCGTTTCCATTGGAACAAGAGAGAGAGTTGGATGTT
AAGGAAACCTCCGCAGAAAGATTAGGAATGGATGGTGACGACGAAAATCG
AGAAATATCGTTAGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGC
AAGACCTTGCTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCA
TCCATGTTTGGGGAACAAAGACGCGTGCTGAACGACGAAAAGCGAGAATT
ATCGTTGGCAGAACTCGAGAGAAAAGACAACGAAATCCATGAGCAAGACC
TTGCTGCATCTCGAAGTCTCAACGGAAAACCTCTTAGAATCGCATCCATG
TTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTT
GGCAGAGCTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTG
CATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCGCATCCATGTTTGGG
GAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGA
ACTTGAGAGAAAAGACAACGAAATCTATGAGCAAGACCTTGCTGCATCTC
GAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAGCGA
AGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGA
GAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTC
TCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGC
GAGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTTGAGAGAAA
AGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGCGCTTAGA
ATCTCTCAACGGAAAACATGAAGTGGTTTATCATATTGACAAGTTTCATT
TTGTGTGCACGTGCCATCGAAGATGACAGTTATATGGATTACATGAGTAG
AAGATCACACTCCTGGCCGCTTCCCAATCGACGGGAGTTCGGAAATCTCG
GAAGATATTATTACGATGTTATTGAAAAAGATGATCCGTTTCCATTGGAA
CAAGAGAGAGAGTTGGATGTTAAGGAAACCTCCGCAGAAAGATTAGGAAT
GGATGGTGACGACGAAAATCGAGAAATATCGTTAGCAGAACTTGAGAGAA
AAGACAACGAAATCCATGAGCAAGACCTTGCTGTATCTCGAAGTCTCAAC
GGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAAGACGCGTGCT
GAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTCGAGAGAAAAGACA
ACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAA
CCTCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGA
CGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAA
TCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTT
AGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAA
ACGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAATCTATG
AGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAGAATC
CCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGA
ATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAATCCATGAGCAAG
ACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCC
ATGTTTGGGGAACAAAGACGCGAGCTGAACGACGAAAAGCGAGAATTATC
GTTGGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTG
CTGCATCTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056467-exon-scaffold_276-1575043694:31369..31397 | TCONS_00056467-exon-scaffold_276-1575043694:31369..31397 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1575043694:29518..30571 | TCONS_00056467-exon-scaffold_276-1575043694:29518..30571 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1575043694:29360..29373 | TCONS_00056467-exon-scaffold_276-1575043694:29360..29373 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1575043694:29056..29068 | TCONS_00056467-exon-scaffold_276-1575043694:29056..29068 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1510915933:31369..31397 | TCONS_00056467-exon-scaffold_276-1510915933:31369..31397 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1510915933:29518..30571 | TCONS_00056467-exon-scaffold_276-1510915933:29518..30571 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1510915933:29360..29373 | TCONS_00056467-exon-scaffold_276-1510915933:29360..29373 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1510915933:29056..29068 | TCONS_00056467-exon-scaffold_276-1510915933:29056..29068 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1491911889:31369..31397 | TCONS_00056467-exon-scaffold_276-1491911889:31369..31397 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1491911889:29518..30571 | TCONS_00056467-exon-scaffold_276-1491911889:29518..30571 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1491911889:29360..29373 | TCONS_00056467-exon-scaffold_276-1491911889:29360..29373 | Clytia hemisphaerica | exon |
| TCONS_00056467-exon-scaffold_276-1491911889:29056..29068 | TCONS_00056467-exon-scaffold_276-1491911889:29056..29068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:29056..31397 - |
Blast
The following BLAST results are available for this feature:
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